Tan0008863 (gene) Snake gourd v1

Overview
NameTan0008863
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionclassical arabinogalactan protein 1-like
LocationLG01: 5041912 .. 5042582 (+)
RNA-Seq ExpressionTan0008863
SyntenyTan0008863
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTCTCTCTTCATTTCTTCATCTTCCTCACCTTCTCTCTCTAGATTCTTCGTTTTTCTTTTGGTAAATTTTTTGATTTACAGAAATGGCGATTAGAAGTTTTGTAGTGATAATTTTGGTGGCGATGTCGATCGGCTCTGCAATCGCGCAATCTCCGTCGGCATCTCCGTCATTGTCTCCGAGCAAATCGCCGTCGGTTTCTCCGCCTGTCAAGTCGCCGAAATCCTCTCCGGCTGCGGCGCCTACTCCGACCTCTCTGAAGTCTCCGCCATCTCCTCCGGCTGCTTCTCCGTCTACTTCTCCATCTCCGGCGTCTTCTCCTTCCTCGATCTCGTCTCCGCCGGCTGACGCTCCGGCTCCGTCTGATAACGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTGCTATACGCCGCCGTTTTGATGATCTGAGAGCAATTTGATTTGATTAGTCTCTGTTCTCTCTCTCTGAGTGATTTATTTGTAGTAGATTTCTGAGTACATTTTATTTTGTTACTTTCACAGTTTCTGATGGATTCTATACTTTTTTTTCTTTCTCTGATTTAATTTGTTTCATTGTTTCTTAGTTATGGCGATGATGTGTTTGTTGTTAACGGAGCTCTTCTGTATCTGATTCTTATCATATATTAATTTATA

mRNA sequence

CTTCTCTCTCTTCATTTCTTCATCTTCCTCACCTTCTCTCTCTAGATTCTTCGTTTTTCTTTTGGTAAATTTTTTGATTTACAGAAATGGCGATTAGAAGTTTTGTAGTGATAATTTTGGTGGCGATGTCGATCGGCTCTGCAATCGCGCAATCTCCGTCGGCATCTCCGTCATTGTCTCCGAGCAAATCGCCGTCGGTTTCTCCGCCTGTCAAGTCGCCGAAATCCTCTCCGGCTGCGGCGCCTACTCCGACCTCTCTGAAGTCTCCGCCATCTCCTCCGGCTGCTTCTCCGTCTACTTCTCCATCTCCGGCGTCTTCTCCTTCCTCGATCTCGTCTCCGCCGGCTGACGCTCCGGCTCCGTCTGATAACGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTGCTATACGCCGCCGTTTTGATGATCTGAGAGCAATTTGATTTGATTAGTCTCTGTTCTCTCTCTCTGAGTGATTTATTTGTAGTAGATTTCTGAGTACATTTTATTTTGTTACTTTCACAGTTTCTGATGGATTCTATACTTTTTTTTCTTTCTCTGATTTAATTTGTTTCATTGTTTCTTAGTTATGGCGATGATGTGTTTGTTGTTAACGGAGCTCTTCTGTATCTGATTCTTATCATATATTAATTTATA

Coding sequence (CDS)

ATGGCGATTAGAAGTTTTGTAGTGATAATTTTGGTGGCGATGTCGATCGGCTCTGCAATCGCGCAATCTCCGTCGGCATCTCCGTCATTGTCTCCGAGCAAATCGCCGTCGGTTTCTCCGCCTGTCAAGTCGCCGAAATCCTCTCCGGCTGCGGCGCCTACTCCGACCTCTCTGAAGTCTCCGCCATCTCCTCCGGCTGCTTCTCCGTCTACTTCTCCATCTCCGGCGTCTTCTCCTTCCTCGATCTCGTCTCCGCCGGCTGACGCTCCGGCTCCGTCTGATAACGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTGCTATACGCCGCCGTTTTGATGATCTGA

Protein sequence

MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAVLMI
Homology
BLAST of Tan0008863 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-11
Identity = 64/127 (50.39%), Postives = 80/127 (62.99%), Query Frame = 0

Query: 4   RSFVVIILVAMSIGSAIAQSPSASPS------LSPSKSPS-----VSPPVKSPKSSPAAA 63
           +S V ++L A+ I SA+AQSP+ +PS      +SP+ SP         P  SP  SPAAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAA 64

Query: 64  PTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVL 120
            TP S  SPPSPP A   T+ SPA SPS+IS  P +AP P+  GA S  F+ FGSVAV+L
Sbjct: 65  LTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVML 124

BLAST of Tan0008863 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 98/123 (79.67%), Postives = 107/123 (86.99%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPT 60
           MAIR FVV+++VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTP 
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAV 120
           SL+SPPSPPAASPS SPSP+ SPSSISSPPADAPAPS N AASIS S+FGSVA VLYA V
Sbjct: 61  SLQSPPSPPAASPSLSPSPSPSPSSISSPPADAPAPSGNAAASISLSMFGSVAAVLYAIV 120

BLAST of Tan0008863 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 100/125 (80.00%), Postives = 108/125 (86.40%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSA--SPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSL 60
           MAIRSFV +ILVA+ IGSAIAQSP A  SPS SPSK+PS SP VKSPKSSPAAAPTP+SL
Sbjct: 1   MAIRSFVAMILVALLIGSAIAQSPGASPSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSL 60

Query: 61  KSPPSPPAASPSTSP----SPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYA 120
           KSPPSPP+ SP+TSP    SPA+SPS ISSPPADAPAPS NGAASISFSVFGSVAVVLY 
Sbjct: 61  KSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVLYT 120

BLAST of Tan0008863 vs. NCBI nr
Match: XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-29
Identity = 100/123 (81.30%), Postives = 106/123 (86.18%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPT 60
           MAIR FVV++ VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTP 
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAV 120
           SLKSPPSPPAASPS SPSP  SPSSISSPPADAPAPS N AASISFS+FGSVA VLYA V
Sbjct: 61  SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIV 120

BLAST of Tan0008863 vs. NCBI nr
Match: KGN53727.1 (hypothetical protein Csa_015026 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 5.7e-29
Identity = 93/119 (78.15%), Postives = 103/119 (86.55%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKS 60
           MAI S V +I V+  I SA AQSP+ASPSLSP+KSPS +P   SPKSSPA APTP+SLKS
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHNSPKSSPAVAPTPSSLKS 60

Query: 61  PPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAVLMI 120
           PPSPP++SPSTSPSPASSP+SISSPPADAPAPS NGAASI+FSVFGSVAV LYA VLMI
Sbjct: 61  PPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVVLMI 119

BLAST of Tan0008863 vs. NCBI nr
Match: KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-28
Identity = 96/118 (81.36%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPT 60
           MAIR FVV+++VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTP 
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYA 115
           SLKSPPSPPAASPS SPSP  SPSSISSPPADAPAPS N AASISFS+FGSVA VLYA
Sbjct: 61  SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYA 116

BLAST of Tan0008863 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 100/123 (81.30%), Postives = 106/123 (86.18%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPT 60
           MAIR FVV++ VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTP 
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAV 120
           SLKSPPSPPAASPS SPSP  SPSSISSPPADAPAPS N AASISFS+FGSVA VLYA V
Sbjct: 61  SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIV 120

BLAST of Tan0008863 vs. ExPASy TrEMBL
Match: A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.8e-29
Identity = 93/119 (78.15%), Postives = 103/119 (86.55%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKS 60
           MAI S V +I V+  I SA AQSP+ASPSLSP+KSPS +P   SPKSSPA APTP+SLKS
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHNSPKSSPAVAPTPSSLKS 60

Query: 61  PPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAVLMI 120
           PPSPP++SPSTSPSPASSP+SISSPPADAPAPS NGAASI+FSVFGSVAV LYA VLMI
Sbjct: 61  PPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVVLMI 119

BLAST of Tan0008863 vs. ExPASy TrEMBL
Match: A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 97/123 (78.86%), Postives = 104/123 (84.55%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPT 60
           MA R FVV++ VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTPT
Sbjct: 1   MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60

Query: 61  SLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAV 120
           SLKSPPSPPAASPS SPSP  SPSSISSPPADAPAPS N AASIS S+FGSVA VL+A V
Sbjct: 61  SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNSAASISLSMFGSVAAVLFAIV 120

BLAST of Tan0008863 vs. ExPASy TrEMBL
Match: A0A6J1J6X2 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483108 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-26
Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPS----VSPPVKSPKSSPAAAPTPT 60
           MAIRSFVV+ILVA+ IGSAIAQSP+ASPSLSP KSPS     SP VKSPKSSPAA   PT
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPLASPSVKSPKSSPAA---PT 60

Query: 61  SLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAV 120
                   PA+SPSTSPSPA+SPSSISSPPADAPAPS NGAASISFSVFGSVAVVLYA V
Sbjct: 61  --------PASSPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVLYAVV 112

BLAST of Tan0008863 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.8e-26
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPT 60
           MAIRSFVV+ILVA+ IGSAIAQSP+ASPSL    SPSK+PS SP VKSPKSSPAA   PT
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAA---PT 60

Query: 61  SLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVLYAAV 120
                   PA+SPSTSPSPA+SPSSISSPPADAPAPS +GAASISFSVFGSVAVVLYA V
Sbjct: 61  --------PASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVV 112

BLAST of Tan0008863 vs. TAIR 10
Match: AT5G64310.1 (arabinogalactan protein 1 )

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-12
Identity = 64/127 (50.39%), Postives = 80/127 (62.99%), Query Frame = 0

Query: 4   RSFVVIILVAMSIGSAIAQSPSASPS------LSPSKSPS-----VSPPVKSPKSSPAAA 63
           +S V ++L A+ I SA+AQSP+ +PS      +SP+ SP         P  SP  SPAAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAA 64

Query: 64  PTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAVVL 120
            TP S  SPPSPP A   T+ SPA SPS+IS  P +AP P+  GA S  F+ FGSVAV+L
Sbjct: 65  LTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVML 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LCN54.3e-1150.39Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2... [more]
Match NameE-valueIdentityDescription
XP_023542663.11.2e-2979.67classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_038877310.11.2e-2980.00classical arabinogalactan protein 1 [Benincasa hispida][more]
XP_022942993.13.4e-2981.30classical arabinogalactan protein 1-like [Cucurbita moschata][more]
KGN53727.15.7e-2978.15hypothetical protein Csa_015026 [Cucumis sativus][more]
KAG7030900.12.8e-2881.36hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A6J1FW491.6e-2981.30classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0KZB82.8e-2978.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1[more]
A0A6J1JSK41.2e-2778.86classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1J6X21.7e-2678.86classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1E9Q33.8e-2678.05classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
Match NameE-valueIdentityDescription
AT5G64310.13.1e-1250.39arabinogalactan protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..48
NoneNo IPR availablePANTHERPTHR36321:SF2CLASSICAL ARABINOGALACTAN PROTEIN 1coord: 1..119
IPR044959Classical arabinogalactan proteinPANTHERPTHR36321CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0008863.1Tan0008863.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane