Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGATATTAGAGTGATGGTGCATCCAAGTCAAGATTATGATGTAGTTACTGTGTTAGAAGAGGAGAATTCTCTGGAGGTTAATCGTTCGACAGCGCAACGCCATACACGAGCTTCAGGTAACACTTAGAGCATATTAACTTATAGTTATAAATGTTTCTCTATTGTTTAATTTGTTGATCCATCCTTATTTAAGGATCTAGATCACGTTCTAGAGTAGCCTCTAGATCGCGAGGCAGGAGGGCGAGAGGGCATAGTCGAAGGATTGAGTTAGAGCGTTATGTCAATGCACATGGTAGAATACCCATCGAGATCGATGAGAAGGTCGACAAACCAGTGTGTACTAAGGCCACTACGTTCAGTGGAGCCATTGGTACAATCACCAGAGATACAATTCCACTGCATTATAAAACGTGGAGCGACGCCCCAAAGCAAGTTCGAGACAGCATAAAAGATCGACTCTCTGTAAGTTTACTTAGGTTAATATGCATTTTCAATATCGTGAATTTAATCATTAATGGATGCTTACTAAGTTATTACTGAATTTACAGACATACTTCATCCTGGATTTGACCAAACATCACATAAATAGATACGTAGAGCGATTGATATCAACCACATTCAAGGAATATAGGGCAGAATTGTATCAATACTAG
mRNA sequence
ATGTGGGATATTAGAGTGATGGTGCATCCAAGTCAAGATTATGATGTAGTTACTGTGTTAGAAGAGGAGAATTCTCTGGAGGTTAATCGTTCGACAGCGCAACGCCATACACGAGCTTCAGGATCTAGATCACGTTCTAGAGTAGCCTCTAGATCGCGAGGCAGGAGGGCGAGAGGGCATAGTCGAAGGATTGAGTTAGAGCGTTATGTCAATGCACATGGTAGAATACCCATCGAGATCGATGAGAAGGTCGACAAACCAGTGTGTACTAAGGCCACTACGTTCAGTGGAGCCATTGGTACAATCACCAGAGATACAATTCCACTGCATTATAAAACGTGGAGCGACGCCCCAAAGCAAGTTCGAGACAGCATAAAAGATCGACTCTCTACATACTTCATCCTGGATTTGACCAAACATCACATAAATAGATACGTAGAGCGATTGATATCAACCACATTCAAGGAATATAGGGCAGAATTGTATCAATACTAG
Coding sequence (CDS)
ATGTGGGATATTAGAGTGATGGTGCATCCAAGTCAAGATTATGATGTAGTTACTGTGTTAGAAGAGGAGAATTCTCTGGAGGTTAATCGTTCGACAGCGCAACGCCATACACGAGCTTCAGGATCTAGATCACGTTCTAGAGTAGCCTCTAGATCGCGAGGCAGGAGGGCGAGAGGGCATAGTCGAAGGATTGAGTTAGAGCGTTATGTCAATGCACATGGTAGAATACCCATCGAGATCGATGAGAAGGTCGACAAACCAGTGTGTACTAAGGCCACTACGTTCAGTGGAGCCATTGGTACAATCACCAGAGATACAATTCCACTGCATTATAAAACGTGGAGCGACGCCCCAAAGCAAGTTCGAGACAGCATAAAAGATCGACTCTCTACATACTTCATCCTGGATTTGACCAAACATCACATAAATAGATACGTAGAGCGATTGATATCAACCACATTCAAGGAATATAGGGCAGAATTGTATCAATACTAG
Protein sequence
MWDIRVMVHPSQDYDVVTVLEEENSLEVNRSTAQRHTRASGSRSRSRVASRSRGRRARGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDAPKQVRDSIKDRLSTYFILDLTKHHINRYVERLISTTFKEYRAELYQY
Homology
BLAST of Tan0008748 vs. NCBI nr
Match:
XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])
HSP 1 Score: 158.7 bits (400), Expect = 4.3e-35
Identity = 83/160 (51.88%), Postives = 111/160 (69.38%), Query Frame = 0
Query: 5 RVMVHPSQDYDVVTVLEEENSLEVNRSTAQRHTRASGSRSRSRVASRSRGRRARGHSRRI 64
RV+ H Q+ + +L+ +++ + ST + T ASGSRS SR SR RR RGHSR +
Sbjct: 518 RVLAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNL 577
Query: 65 ELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDAPKQVRDS 124
EL+R+VN HGRI IEIDE+V KPVC AT FS AIGTI R+TIPL K WSD K+VRD
Sbjct: 578 ELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDL 637
Query: 125 IKDRLSTYFILDLTKHHINRYVERLISTTFKEYRAELYQY 165
+ D+L +YF D+ K H+ +YV + + TFKEYR++LY++
Sbjct: 638 VVDQLLSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKH 677
BLAST of Tan0008748 vs. NCBI nr
Match:
XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])
HSP 1 Score: 144.8 bits (364), Expect = 6.5e-31
Identity = 83/187 (44.39%), Postives = 111/187 (59.36%), Query Frame = 0
Query: 5 RVMVHPSQDYDVVTVLEEENSLEVNRSTAQRHTRASGSRSRSRVASRSRGRRARGHSRRI 64
RV+ H Q+ + +L+ +++ + ST + T ASGSRS SR SR RR RGHSR +
Sbjct: 330 RVLAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNL 389
Query: 65 ELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDAPKQVRDS 124
EL+R+VN HGRI IEIDE+V KPVC AT FS AIGTI R+TIPL K WSD K+VRD
Sbjct: 390 ELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDL 449
Query: 125 IKDRL---------------------------STYFILDLTKHHINRYVERLISTTFKEY 165
+ D+L +YF D+ K H+ +YV + + TFKEY
Sbjct: 450 VVDQLLVTLRFIYAFGYYLTCKCLIAQLLLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEY 509
BLAST of Tan0008748 vs. NCBI nr
Match:
XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])
HSP 1 Score: 144.8 bits (364), Expect = 6.5e-31
Identity = 83/187 (44.39%), Postives = 111/187 (59.36%), Query Frame = 0
Query: 5 RVMVHPSQDYDVVTVLEEENSLEVNRSTAQRHTRASGSRSRSRVASRSRGRRARGHSRRI 64
RV+ H Q+ + +L+ +++ + ST + T ASGSRS SR SR RR RGHSR +
Sbjct: 518 RVLAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNL 577
Query: 65 ELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDAPKQVRDS 124
EL+R+VN HGRI IEIDE+V KPVC AT FS AIGTI R+TIPL K WSD K+VRD
Sbjct: 578 ELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDL 637
Query: 125 IKDRL---------------------------STYFILDLTKHHINRYVERLISTTFKEY 165
+ D+L +YF D+ K H+ +YV + + TFKEY
Sbjct: 638 VVDQLLVTLRFIYAFGYYLTCKCLIAQLLLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEY 697
BLAST of Tan0008748 vs. NCBI nr
Match:
XP_038887411.1 (poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412.1 poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida])
HSP 1 Score: 144.8 bits (364), Expect = 6.5e-31
Identity = 83/187 (44.39%), Postives = 111/187 (59.36%), Query Frame = 0
Query: 5 RVMVHPSQDYDVVTVLEEENSLEVNRSTAQRHTRASGSRSRSRVASRSRGRRARGHSRRI 64
RV+ H Q+ + +L+ +++ + ST + T ASGSRS SR SR RR RGHSR +
Sbjct: 518 RVLAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNL 577
Query: 65 ELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDAPKQVRDS 124
EL+R+VN HGRI IEIDE+V KPVC AT FS AIGTI R+TIPL K WSD K+VRD
Sbjct: 578 ELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDL 637
Query: 125 IKDRL---------------------------STYFILDLTKHHINRYVERLISTTFKEY 165
+ D+L +YF D+ K H+ +YV + + TFKEY
Sbjct: 638 VVDQLLVTLRFIYAFGYYLTCKCLIAQLLLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEY 697
BLAST of Tan0008748 vs. NCBI nr
Match:
XP_038887410.1 (poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida])
HSP 1 Score: 144.8 bits (364), Expect = 6.5e-31
Identity = 83/187 (44.39%), Postives = 111/187 (59.36%), Query Frame = 0
Query: 5 RVMVHPSQDYDVVTVLEEENSLEVNRSTAQRHTRASGSRSRSRVASRSRGRRARGHSRRI 64
RV+ H Q+ + +L+ +++ + ST + T ASGSRS SR SR RR RGHSR +
Sbjct: 518 RVLAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNL 577
Query: 65 ELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDAPKQVRDS 124
EL+R+VN HGRI IEIDE+V KPVC AT FS AIGTI R+TIPL K WSD K+VRD
Sbjct: 578 ELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDL 637
Query: 125 IKDRL---------------------------STYFILDLTKHHINRYVERLISTTFKEY 165
+ D+L +YF D+ K H+ +YV + + TFKEY
Sbjct: 638 VVDQLLVTLRFIYAFGYYLTCKCLIAQLLLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEY 697
BLAST of Tan0008748 vs. ExPASy TrEMBL
Match:
A0A5A7TFG0 (Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00210 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 57/148 (38.51%), Postives = 88/148 (59.46%), Query Frame = 0
Query: 17 VTVLEEENSLEVNRSTAQRHTRASGSRSRSRVASRSRGRRARGHSRRIELERYVNAHGRI 76
+T +E+ N+ V+ ST S S++ ++ RGR RG+ R IEL+++V HG+I
Sbjct: 646 LTEVEQTNTPSVDPSTP----------SGSQLGTKKRGRGVRGYGRNIELDKFVEKHGKI 705
Query: 77 PIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDAPKQVRDSIKDRLSTYFILD 136
IEI+E+ KPV T A + IGT R+TIPL + W P VR+ + DRL T+F D
Sbjct: 706 KIEINEEEGKPVTTFAPKIALGIGTALRNTIPLSCENWKAVPMGVRELVIDRLETHFEFD 765
Query: 137 LTKHHINRYVERLISTTFKEYRAELYQY 165
T + +Y+E + F+E+RA+L++Y
Sbjct: 766 PTNMVVRKYLEEKMQNIFREFRADLHKY 783
BLAST of Tan0008748 vs. ExPASy TrEMBL
Match:
A0A5A7US78 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001230 PE=4 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 55/148 (37.16%), Postives = 86/148 (58.11%), Query Frame = 0
Query: 17 VTVLEEENSLEVNRSTAQRHTRASGSRSRSRVASRSRGRRARGHSRRIELERYVNAHGRI 76
+T +E+ N+ ++ ST S S++ ++ RGR RG+ R IEL+++V HG+I
Sbjct: 443 LTEVEQTNTPSIDPSTP----------SGSQLGTKKRGRGVRGYGRNIELDKFVQKHGKI 502
Query: 77 PIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDAPKQVRDSIKDRLSTYFILD 136
IEI+E+ KPV T + IGT R+TIPL + W P VR+ + D L T+F D
Sbjct: 503 KIEINEEEGKPVTTFGPKIALGIGTAVRNTIPLSCENWKAVPMGVRELVIDWLETHFEFD 562
Query: 137 LTKHHINRYVERLISTTFKEYRAELYQY 165
T + +Y+E + TF+E+RA L++Y
Sbjct: 563 PTNMVVRKYLEEKMQNTFREFRANLHKY 580
BLAST of Tan0008748 vs. ExPASy TrEMBL
Match:
A0A5A7TRX4 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001040 PE=4 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 2.8e-16
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = 0
Query: 49 ASRSRGRRARGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIP 108
+S S GR RG+ R IEL+++V HG+I IEI+E+ KPV T A + IGT R+TIP
Sbjct: 688 SSDSDGRGVRGYGRNIELDKFVEKHGKIKIEINEEEGKPVTTFAPKIALGIGTAVRNTIP 747
Query: 109 LHYKTWSDAPKQVRDSIKDRLSTYFILDLTKHHINRYVERLISTTFKEYRAELYQY 165
L + W P VR+ + D L T+F D T + +Y+E + TF+E+RA+L++Y
Sbjct: 748 LSCENWKAVPMGVRELVIDWLETHFEFDPTNMVVRKYLEEKMQNTFREFRADLHKY 803
BLAST of Tan0008748 vs. ExPASy TrEMBL
Match:
A0A5D3DD82 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00120 PE=4 SV=1)
HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 0
Query: 56 RARGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWS 115
R R SR +ELER+V +GRIP+ I +KP+ A FS AIG R T P+ W+
Sbjct: 41 RRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWT 100
Query: 116 DAPKQVRDSIKDRLSTYFILDLTKHHINRYVERLISTTFKEYRAELYQY 165
D ++ + +K L +F+LD +NR+VE + TTFKE+RA+ +++
Sbjct: 101 DVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKEFRADCHKH 149
BLAST of Tan0008748 vs. ExPASy TrEMBL
Match:
A0A5D3D8C2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00430 PE=4 SV=1)
HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 0
Query: 56 RARGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWS 115
R R SR +ELER+V +GRIP+ I +KP+ A FS AIG R T P+ W+
Sbjct: 96 RRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWT 155
Query: 116 DAPKQVRDSIKDRLSTYFILDLTKHHINRYVERLISTTFKEYRAELYQY 165
D ++ + +K L +F+LD +NR+VE + TTFKE+RA+ +++
Sbjct: 156 DVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKEFRADCHKH 204
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_038887409.1 | 4.3e-35 | 51.88 | poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida] | [more] |
| XP_038887413.1 | 6.5e-31 | 44.39 | uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida] | [more] |
| XP_038887408.1 | 6.5e-31 | 44.39 | poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida] | [more] |
| XP_038887411.1 | 6.5e-31 | 44.39 | poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412... | [more] |
| XP_038887410.1 | 6.5e-31 | 44.39 | poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TFG0 | 2.0e-17 | 38.51 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuw... | [more] |
| A0A5A7US78 | 1.7e-16 | 37.16 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7TRX4 | 2.8e-16 | 43.10 | DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3DD82 | 1.3e-13 | 39.45 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5D3D8C2 | 1.3e-13 | 39.45 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
