Tan0008717 (gene) Snake gourd v1

Overview


Name	Tan0008717
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CCHC-type domain-containing protein
Location	LG04: 23238161 .. 23239222 (-)
RNA-Seq Expression	Tan0008717
Synteny	Tan0008717

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATGTTTGGAGGGTTCATAAGGATACATCTATTGATTGCATTGGGGAAAACCTATTTTTCTTTAAATTCAAATCAATTTTGGAGAAGAATAGGATTGTCTGTGACGGCCCTTGGTTTTTTAATGGAGCTATCATACTTTTTCAAGAGCCAAACGTTCTAGAACAACCTGAAAACTTGAGACTGACTCATGCTGACTTCTGGGTCCAATTTTATAATATCCCTTTATTTTGTATGAACGAAGAGGTTCTTAGATCGATGGGGAGCTCATTAGGAGAAGTCCTAAATGTGGATACTTCCTCGTTGGGAGGAATTTGGGGTAGATTTGCTCGCTTACGAGTAAAGATTGATATTACTAAACCTCTAAGAGGGCTGAAAATCAAAATTGTCGATAATGAAGAGGATAGGTGGATTCCTTGTAGATATGAGAAGCTACCCGAATTTTGCTTTAATTGTGGGCGATTAGGTCACACTCAAAAAGAATGTGATAGTTGCATTGAGCAAGGGGAGGGAGTTGGTCTTTCTAGATATGGCCCAAATCTACATACAGTAGAGTTTAAAAGAGTTCTGGATAAAAAAGGGGAAGCCAGAATTAGGGAGGATTATGAACCCTTAAAAAGTTTGAAAACAGTCAAGGAGAATGTGAAGAATAATTTAAATATTAATAAGATTAAGGGTTTTGAATGGAAGAAGACTGAGAAGAAGGAGGTTGAGGTTGGTTTTCTACAGAAAGCTGAAGCTACTAATGACGAAAGTAAGATGGCTAGTTCTAATATGTTTGAAAGGAATAAAGAGGCTGATCATGTATTGATGGTTAGTGCTAATAACCTAACTGAGAAAGGAAAATTAGTAAAAGGCATGGAGCCTTTGATTATGGAGGAGATTATGACAGATCTAGTAAATGAAGGGGAAACTCGATCTAAGGGATTTGATTTGAATTCCTTGGAAGGTGAAGATTTGATGATCGAGAGACATTTGGAGTTAGACCCTAAGGAAAACAATAAATCTCATTCATCTAAAAAGAAGAAATGGCATAGGCTTTTCATTGATAAAGAATAA

mRNA sequence

ATGAAGAATGTTTGGAGGGTTCATAAGGATACATCTATTGATTGCATTGGGGAAAACCTATTTTTCTTTAAATTCAAATCAATTTTGGAGAAGAATAGGATTGTCTGTGACGGCCCTTGGTTTTTTAATGGAGCTATCATACTTTTTCAAGAGCCAAACGTTCTAGAACAACCTGAAAACTTGAGACTGACTCATGCTGACTTCTGGGTCCAATTTTATAATATCCCTTTATTTTGTATGAACGAAGAGGTTCTTAGATCGATGGGGAGCTCATTAGGAGAAGTCCTAAATGTGGATACTTCCTCGTTGGGAGGAATTTGGGGTAGATTTGCTCGCTTACGAGTAAAGATTGATATTACTAAACCTCTAAGAGGGCTGAAAATCAAAATTGTCGATAATGAAGAGGATAGGTGGATTCCTTGTAGATATGAGAAGCTACCCGAATTTTGCTTTAATTGTGGGCGATTAGGTCACACTCAAAAAGAATGTGATAGTTGCATTGAGCAAGGGGAGGGAGTTGGTCTTTCTAGATATGGCCCAAATCTACATACAGTAGAGTTTAAAAGAGTTCTGGATAAAAAAGGGGAAGCCAGAATTAGGGAGGATTATGAACCCTTAAAAAGTTTGAAAACAGTCAAGGAGAATGTGAAGAATAATTTAAATATTAATAAGATTAAGGGTTTTGAATGGAAGAAGACTGAGAAGAAGGAGGTTGAGGTTGGTTTTCTACAGAAAGCTGAAGCTACTAATGACGAAAGTAAGATGGCTAGTTCTAATATGTTTGAAAGGAATAAAGAGGCTGATCATGTATTGATGGTTAGTGCTAATAACCTAACTGAGAAAGGAAAATTAGTAAAAGGCATGGAGCCTTTGATTATGGAGGAGATTATGACAGATCTAGTAAATGAAGGGGAAACTCGATCTAAGGGATTTGATTTGAATTCCTTGGAAGGTGAAGATTTGATGATCGAGAGACATTTGGAGTTAGACCCTAAGGAAAACAATAAATCTCATTCATCTAAAAAGAAGAAATGGCATAGGCTTTTCATTGATAAAGAATAA

Coding sequence (CDS)

ATGAAGAATGTTTGGAGGGTTCATAAGGATACATCTATTGATTGCATTGGGGAAAACCTATTTTTCTTTAAATTCAAATCAATTTTGGAGAAGAATAGGATTGTCTGTGACGGCCCTTGGTTTTTTAATGGAGCTATCATACTTTTTCAAGAGCCAAACGTTCTAGAACAACCTGAAAACTTGAGACTGACTCATGCTGACTTCTGGGTCCAATTTTATAATATCCCTTTATTTTGTATGAACGAAGAGGTTCTTAGATCGATGGGGAGCTCATTAGGAGAAGTCCTAAATGTGGATACTTCCTCGTTGGGAGGAATTTGGGGTAGATTTGCTCGCTTACGAGTAAAGATTGATATTACTAAACCTCTAAGAGGGCTGAAAATCAAAATTGTCGATAATGAAGAGGATAGGTGGATTCCTTGTAGATATGAGAAGCTACCCGAATTTTGCTTTAATTGTGGGCGATTAGGTCACACTCAAAAAGAATGTGATAGTTGCATTGAGCAAGGGGAGGGAGTTGGTCTTTCTAGATATGGCCCAAATCTACATACAGTAGAGTTTAAAAGAGTTCTGGATAAAAAAGGGGAAGCCAGAATTAGGGAGGATTATGAACCCTTAAAAAGTTTGAAAACAGTCAAGGAGAATGTGAAGAATAATTTAAATATTAATAAGATTAAGGGTTTTGAATGGAAGAAGACTGAGAAGAAGGAGGTTGAGGTTGGTTTTCTACAGAAAGCTGAAGCTACTAATGACGAAAGTAAGATGGCTAGTTCTAATATGTTTGAAAGGAATAAAGAGGCTGATCATGTATTGATGGTTAGTGCTAATAACCTAACTGAGAAAGGAAAATTAGTAAAAGGCATGGAGCCTTTGATTATGGAGGAGATTATGACAGATCTAGTAAATGAAGGGGAAACTCGATCTAAGGGATTTGATTTGAATTCCTTGGAAGGTGAAGATTTGATGATCGAGAGACATTTGGAGTTAGACCCTAAGGAAAACAATAAATCTCATTCATCTAAAAAGAAGAAATGGCATAGGCTTTTCATTGATAAAGAATAA

Protein sequence

MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPENLRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDITKPLRGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKECDSCIEQGEGVGLSRYGPNLHTVEFKRVLDKKGEARIREDYEPLKSLKTVKENVKNNLNINKIKGFEWKKTEKKEVEVGFLQKAEATNDESKMASSNMFERNKEADHVLMVSANNLTEKGKLVKGMEPLIMEEIMTDLVNEGETRSKGFDLNSLEGEDLMIERHLELDPKENNKSHSSKKKKWHRLFIDKE

Homology

[Close]

BLAST of Tan0008717 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 4.0e-38
Identity = 70/165 (42.42%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           MK+VWRVH  T  + +G N++   FKS+ EK+R++  GPW FN ++++   P    QP +
Sbjct: 58  MKSVWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLD 117

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
           +      FW+Q +NIP  C++ E+   +G+ LG+V  ++     G  G F R+RVKID++
Sbjct: 118 MNFNFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVS 177

Query: 121 KPL-RGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKECD 165
           KPL RG+K+K  D  +D W P RYEKLP+FC+ CG++GH+ +EC+
Sbjct: 178 KPLRRGIKLKNSDG-KDIWCPLRYEKLPDFCYECGKIGHSGRECE 221

[Close]

BLAST of Tan0008717 vs. NCBI nr
Match: XP_015387877.1 (uncharacterized protein LOC107177871 [Citrus sinensis] >XP_024041959.1 uncharacterized protein LOC112099090 [Citrus clementina])

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-35
Identity = 70/163 (42.94%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           M+N WR  KD  ++ +GEN F FKF S  EK R++  GPW F+ A+++  EP+ +   +N
Sbjct: 60  MQNAWRTVKDVKVESMGENRFLFKFGSEEEKKRVLMGGPWHFDRALLVLTEPDGIGDIKN 119

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
              TH+ FWVQ +NIP+ CMN E ++ +G  LG+V  V+T + G   G FAR R+ I+IT
Sbjct: 120 QPFTHSSFWVQLHNIPIMCMNRETIQELGKKLGKVEEVETDNAGECIGLFARARISINIT 179

Query: 121 KPLRGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKEC 164
            PL+ + + + + E    +P  YEKLP+FCF C  +GH  +EC
Sbjct: 180 HPLKKV-VYLQEGEVKIPMPVLYEKLPDFCFCCAHIGHQFREC 221

[Close]

BLAST of Tan0008717 vs. NCBI nr
Match: XP_028102454.1 (uncharacterized protein LOC114301689 [Camellia sinensis])

HSP 1 Score: 159.1 bits (401), Expect = 7.1e-35
Identity = 75/183 (40.98%), Postives = 115/183 (62.84%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           +  VWR  K      IG NLF F+F  + +K R++ +GPW F+  +IL  E +V  QP  
Sbjct: 59  LMTVWRPAKGMDFHVIGMNLFLFQFHHLADKRRVLLNGPWSFDKHLILLNEVDVHLQPSK 118

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
           + L+ A FW+Q +N+PL  M +EV   +G+ +G +++V+    G   GR+ R+RV I++ 
Sbjct: 119 VLLSEATFWIQVHNLPLISMTKEVGYLIGNKIGSIVDVEYGPGGMAVGRYLRIRVTINVA 178

Query: 121 KPL-RGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKECDSCIEQGE-GVGLS-R 180
           KPL RG+K+  V N E  W+  +YE+LP FC+ CG LGH++KEC++ + Q E G G + +
Sbjct: 179 KPLHRGMKL-AVHNRESVWVDFKYERLPNFCYCCGVLGHSEKECNTLLSQLETGTGKAVQ 238

[Close]

BLAST of Tan0008717 vs. NCBI nr
Match: XP_015381281.1 (uncharacterized protein LOC107174698 [Citrus sinensis])

HSP 1 Score: 157.9 bits (398), Expect = 1.6e-34
Identity = 69/163 (42.33%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           M+N WR  K+  I+ +GEN F FKF    EK R++  GPW F+ A+++  EP+ +   +N
Sbjct: 60  MQNAWRTVKEVKIESMGENRFLFKFGLEEEKKRVLMGGPWHFDRALLVLTEPDGIGNIKN 119

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
              TH+ FWVQ +NIP+ CMN E ++ +G  LG+V  V+T + G   G FAR R+ I+IT
Sbjct: 120 QPFTHSSFWVQLHNIPMMCMNRETIQELGKKLGKVEEVETDNAGDCIGLFARARIAINIT 179

Query: 121 KPLRGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKEC 164
            PL+ + + + + E    +P  YEKLP+FCF C  +GH  +EC
Sbjct: 180 HPLKKV-VYLQEGEVKIPMPVLYEKLPDFCFCCAHIGHQFREC 221

[Close]

BLAST of Tan0008717 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-34
Identity = 65/171 (38.01%), Postives = 111/171 (64.91%), Query Frame = 0


Query: 3   NVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPENLR 62
           +VW+  K   +  IG+NLF F F  +++K R++ DGPW F+  +++  E +   QP +++
Sbjct: 61  SVWQPTKGMQVRVIGDNLFVFVFGHVVDKRRVLSDGPWTFDKHLLMLGEMDPNVQPSDIQ 120

Query: 63  LTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDITKP 122
           LT   FWV   N+PL  MN++V   +G+++G+ +++D    G +WGR  R+RV +D+ KP
Sbjct: 121 LTRVQFWVHVCNLPLVLMNKKVGEIVGNAVGQFIDMDYEDGGIVWGRTMRIRVALDVRKP 180

Query: 123 L-RGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKECDSCIEQGEG 173
           L RG+K+ +  + E  W+  +YE+LP +C+ CGRLGH+++ECD  +   +G
Sbjct: 181 LRRGMKLAL-SSAEPIWVDFKYERLPIYCYFCGRLGHSERECDDKLSSADG 230

[Close]

BLAST of Tan0008717 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-38
Identity = 70/165 (42.42%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           MK+VWRVH  T  + +G N++   FKS+ EK+R++  GPW FN ++++   P    QP +
Sbjct: 58  MKSVWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLD 117

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
           +      FW+Q +NIP  C++ E+   +G+ LG+V  ++     G  G F R+RVKID++
Sbjct: 118 MNFNFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVS 177

Query: 121 KPL-RGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKECD 165
           KPL RG+K+K  D  +D W P RYEKLP+FC+ CG++GH+ +EC+
Sbjct: 178 KPLRRGIKLKNSDG-KDIWCPLRYEKLPDFCYECGKIGHSGRECE 221

[Close]

BLAST of Tan0008717 vs. ExPASy TrEMBL
Match: A0A1S8AC25 (CCHC-type domain-containing protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-34
Identity = 69/166 (41.57%), Postives = 108/166 (65.06%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           M+ VWR  ++  I+ +GEN+F FKF S ++K  I+  GPW F+ A+I   EP  +   + 
Sbjct: 60  MQRVWRTSREVKIEKLGENVFMFKFGSEVDKRSIMVGGPWHFDRALIGLTEPTGIGDIKK 119

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
              +H  FWVQ +++P+ CM++++   +G  +G+V  V+T + G  +G+F RLR+ +DIT
Sbjct: 120 QDFSHVSFWVQIHDVPIMCMSKDMAAELGKVIGKVEEVETDAAGECFGQFLRLRISVDIT 179

Query: 121 KPLRGLKIKIVDNEEDR-WIPCR--YEKLPEFCFNCGRLGHTQKEC 164
           KPL+ + I++   EED   IP R  YE+LP+FCF CGR+GH  +EC
Sbjct: 180 KPLKKI-IELEQEEEDADDIPMRVMYERLPDFCFCCGRIGHQYREC 224

[Close]

BLAST of Tan0008717 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.0e-34
Identity = 103/323 (31.89%), Postives = 163/323 (50.46%), Query Frame = 0


Query: 5   WRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPENLRLT 64
           W+V    +++ IG+NLF F F    + NR++  GPWFF+ A+I+ Q+P   +    L   
Sbjct: 65  WKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEFN 124

Query: 65  HADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDITKPL- 124
              FW+  +++P+  +N+ +   +G+++G  ++VD +  G  WG   R+RV IDITKPL 
Sbjct: 125 RVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLR 184

Query: 125 RGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKECDS--CIEQGEGVGLSRYGPN 184
           RG+KI I       WIP +YE+LP+FC+ CG +GH+  +CD+     Q +    S YGP 
Sbjct: 185 RGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPW 244

Query: 185 LHTVEFKRVLDK--KGEARIREDYEPLKSLKTVKENVKNNLNINKIKGFEWKKTEKKEV- 244
           L  V  K    K  KG++  RED     S+             +K +G E  K +  E  
Sbjct: 245 LRFVGSKAGAQKGRKGKSPAREDSCGSSSMN------------SKERGVEETKQQLSEQT 304

Query: 245 -EVGFLQK--AEATNDESKMASSNMFERNKEA---DHVLMVSANNL--TEKGKLVKGMEP 304
            + GF  +  AE T D    AS+       E+   DH    S N+   + +G   K M  
Sbjct: 305 NQDGFQSQAAAEQTGDAGGRASATGCALGMESNSWDH----SINDFPKSSQGSRKKLMSD 364

Query: 305 LIMEEIMTDLVNEGETRSKGFDL 314
           ++ +    DL+N+  + ++  DL
Sbjct: 365 VLNKRKPKDLMNQNSSGARFQDL 371

[Close]

BLAST of Tan0008717 vs. ExPASy TrEMBL
Match: A0A6P5RUR1 (uncharacterized protein At4g02000-like OS=Prunus avium OX=42229 GN=LOC110752262 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-33
Identity = 68/164 (41.46%), Postives = 103/164 (62.80%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           M  +W   ++     +GENLF F F   L++NR++ +GPW F+ A++L +EPN    P  
Sbjct: 1   MMKIWNTSREVREKDLGENLFLFIFAKELDRNRVLRNGPWNFDKALVLLEEPNGNIAPSR 60

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
           + L  A+FWVQ +N+PL  M  +  R +G+ +GE ++V     G   GRF R+RVK+DIT
Sbjct: 61  MLLKFAEFWVQIHNVPLLGMTVQTGRQIGNCMGECIDVTQGQEGECMGRFLRVRVKMDIT 120

Query: 121 KPLR-GLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKEC 164
           KPL+ G KI +   +++R +  RYE+LP+FC+NC R+GH    C
Sbjct: 121 KPLKWGTKISLPSGQQER-VDFRYERLPDFCYNCRRMGHIMGAC 163

[Close]

BLAST of Tan0008717 vs. ExPASy TrEMBL
Match: A0A5E4G034 (PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-33
Identity = 70/179 (39.11%), Postives = 104/179 (58.10%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           M  +W   ++  +  IGENLF F F +  ++ R++  GPW F+ A++L + P+    P  
Sbjct: 59  MLKIWSTVREVVVKDIGENLFLFIFATEGDRLRVLRSGPWNFDKALVLLETPDGSIAPSK 118

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
           + L +ADFW+Q +N+PL CM+  + R +G+S G  L+V     G   GRF RLRV +D++
Sbjct: 119 MLLKYADFWIQVHNVPLSCMSTNLGRQIGNSFGRCLDVIEGMDGKCLGRFLRLRVSVDVS 178

Query: 121 KPLRGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKECDSCIEQGEGVGLSRYG 180
           KPLR  K   + +    ++  RYE+LPEFCF CGRLGH  KEC    +  +      YG
Sbjct: 179 KPLRRGKKMTLPSGNTVFVEFRYERLPEFCFCCGRLGHVFKECSFVDQAAKQADEKPYG 237

[Close]

BLAST of Tan0008717 vs. TAIR 10
Match: AT5G36228.1 (nucleic acid binding;zinc ion binding )

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-15
Identity = 47/156 (30.13%), Postives = 72/156 (46.15%), Query Frame = 0


Query: 16  IGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPENLRLTHADFWVQFYNI 75
           + +  F  +F+S ++    +   PW FN   I  Q     + P    LT  D WV    I
Sbjct: 73  LDDRCFQVRFRSEIDLLNGLRRAPWVFNEWFIALQRWE--DFPTEDFLTFIDVWVHIRGI 132

Query: 76  PLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDITKPLRGLKIKIVDNEE 135
           PL  ++E  +  + S+LGEV+ +D +        F R++V++D T+PLR  +     + E
Sbjct: 133 PLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRE 192

Query: 136 DRWIPCRYEKLPEFCFNCGRLGHTQKECDSCIEQGE 172
              I   YEKL   C NC R+ H    C   + Q E
Sbjct: 193 RAMIGFEYEKLQRVCTNCCRVNHQVSHCPYVVHQEE 226

[Close]

BLAST of Tan0008717 vs. TAIR 10
Match: AT2G41590.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25200.1); Has 221 Blast hits to 217 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-13
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 23  FKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPENLRLTHADFWVQFYNIPLFCMNE 82
           F F++ ++   +    PW FN   +      V   P +  +T  D WVQ   IPL  ++E
Sbjct: 80  FLFQNEIDLMMVQRKEPWLFNNWFVAATRWEV--APAHNFVTTIDLWVQIRGIPLPYVSE 139

Query: 83  EVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDITKPLRGLKIKIVDNEEDRWIPCR 142
           E +  +   LGEVL +D      I   + R+RV+  IT  LR  +  + D+ E   I  +
Sbjct: 140 ETVMEIAQDLGEVLMLDYHDTTSIQIAYIRVRVRFGITDRLRFFQRIVFDSGETATIRFQ 199

Query: 143 YEKLPEFCFNCGRLGHTQKEC 164
           YE+L   C +C R  H +  C
Sbjct: 200 YERLRRICSSCFRFTHNRAYC 218

[Close]

BLAST of Tan0008717 vs. TAIR 10
Match: AT2G01050.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-13
Identity = 43/163 (26.38%), Postives = 74/163 (45.40%), Query Frame = 0


Query: 1   MKNVWRVHKDTSIDCIGENLFFFKFKSILEKNRIVCDGPWFFNGAIILFQEPNVLEQPEN 60
           ++ +W+     ++  +    F  +F+   E    +  GPW   G  +L Q+ +    P  
Sbjct: 99  LRELWKPSGVMTVMDLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLR 158

Query: 61  LRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNVDTSSLGGIWGRFARLRVKIDIT 120
             +     WV+  NIP    +  +L  +   LG  L VD +++    GRFAR+ +++++ 
Sbjct: 159 DDIVTTPVWVRLSNIPYNYYHRCLLMEIARGLGRPLKVDMNTINFDKGRFARVCIEVNLA 218

Query: 121 KPLRGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGHTQKEC 164
           KPL+G     V    DR+    YE L + C +CG  GH    C
Sbjct: 219 KPLKG----TVLINGDRYF-VAYEGLSKICSSCGIYGHLVHSC 256

[Close]

BLAST of Tan0008717 vs. TAIR 10
Match: AT2G02103.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-12
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 39  PWFFNGAIILFQEPNVLEQPENLRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNV 98
           PW FN   +      V   P +  +T  D WVQ   IPL  ++EE +  +   LGE++++
Sbjct: 96  PWLFNNWFVAATRWQV--APAHNLVTTIDLWVQIRGIPLPYVSEETVMEIAHDLGEIISL 155

Query: 99  DTSSLGGIWGRFARLRVKIDITKPLRGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGH 158
           D          F R+RV+  IT  LR  +  I D+ E   I  +YE+L   C +C R  H
Sbjct: 156 DFHEATSPQIAFIRVRVRFGITDRLRFFQRVIFDSGETATIRFQYERLRRLCSSCFRFTH 215

Query: 159 TQKEC 164
            +  C
Sbjct: 216 NRAYC 218

[Close]

BLAST of Tan0008717 vs. TAIR 10
Match: AT5G25200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-12
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 39  PWFFNGAIILFQEPNVLEQPENLRLTHADFWVQFYNIPLFCMNEEVLRSMGSSLGEVLNV 98
           PW FN   +      V   P +  +T  D WVQ   IPL  ++EE +  +   LGE++++
Sbjct: 96  PWLFNNWFVAATRWQV--APAHNLVTTIDLWVQIRGIPLPYVSEETVLEIAQDLGEIISL 155

Query: 99  DTSSLGGIWGRFARLRVKIDITKPLRGLKIKIVDNEEDRWIPCRYEKLPEFCFNCGRLGH 158
           D          F R+RV+  IT  LR  +  I D+ E   I  +YE+L   C +C R  H
Sbjct: 156 DFHEATSPQIAFIRVRVRFGITDRLRFFQRIIFDSGETATIRFQYERLRRLCSSCFRFTH 215

Query: 159 TQKEC 164
            +  C
Sbjct: 216 NRAYC 218

The following BLAST results are available for this feature:

BLAST of Tan0008717 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008717 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149484.1	4.0e-38	42.42	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
XP_015387877.1	1.4e-35	42.94	uncharacterized protein LOC107177871 [Citrus sinensis] >XP_024041959.1 uncharact...	[more]
XP_028102454.1	7.1e-35	40.98	uncharacterized protein LOC114301689 [Camellia sinensis]	[more]
XP_015381281.1	1.6e-34	42.33	uncharacterized protein LOC107174698 [Citrus sinensis]	[more]
XP_028122006.1	3.5e-34	38.01	uncharacterized protein LOC114319195 [Camellia sinensis]	[more]

BLAST of Tan0008717 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D765	2.0e-38	42.42	uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A1S8AC25	2.2e-34	41.57	CCHC-type domain-containing protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1	[more]
A0A6J1DU55	5.0e-34	31.89	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6P5RUR1	1.1e-33	41.46	uncharacterized protein At4g02000-like OS=Prunus avium OX=42229 GN=LOC110752262 ...	[more]
A0A5E4G034	4.2e-33	39.11	PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569...	[more]

BLAST of Tan0008717 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36228.1	5.1e-15	30.13	nucleic acid binding;zinc ion binding	[more]
AT2G41590.1	1.3e-13	30.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G01050.1	2.2e-13	26.38	zinc ion binding;nucleic acid binding	[more]
AT2G02103.1	1.1e-12	32.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G25200.1	1.4e-12	32.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 117..164 e-value: 1.1E-15 score: 57.0
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 1..115 e-value: 1.5E-22 score: 79.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..353
None	No IPR available	PANTHER	PTHR31286:SF62	SUBFAMILY NOT NAMED	coord: 17..278
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 17..278
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 150..163 score: 10.048306

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008717.1	Tan0008717.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding