Tan0008588 (gene) Snake gourd v1

Overview


Name	Tan0008588
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotransposable element Tf2
Location	LG06: 41192308 .. 41194618 (+)
RNA-Seq Expression	Tan0008588
Synteny	Tan0008588

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATCAGCGAGGCAAAGCCTCATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATTCCAGCTCCCATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCAATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTGCCGTTACACCAATGAGACCTTCTGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCGTCAATCCTCCCAAAAGGTTTATCCCTAAACCTGAAATCAAAAATTATTTGAAAAACCACTTCAAATTTGAGCCAATTGTGAAGTTGAATTGATGGTATTTCAATTGTTGAAATTATTCAAAATATGTATCCTCAAGGATTCTATTTCCCTCACAGGAATCCTTGATCAAAACAAGGAAATATTATGAATTCATCCTTGTAGATTCAAAATCATCCGGATAACTCATATTCCGGACAGAAATGATCCTTCAAAAATTGCCTACTCAAAACTCAAAATTTTTAAAGTTTTAAACCCTACCAATTGGAATCAAAGTATCTTCACAGAAAGAACACTATCAAAACCATTCAATCCCCAGACATACTCGTACCGGGATTATGTTGAAGCCTGGTACAAAGTAATGTGGTACAAAAATTATGAGCATTCTTGGTTTATTCAATTCTGTCAAAATGCTTACAAAATAGATTATCCATTCTGGTTTATCAAATGGTGGAAGACTTTCGGCCTATCAGAAGAAATCTTTCTAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTTTCAAACCCCTTGGATATTCTGTTGGAATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTCAATTCTAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCCTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGATCCGTTTTTAGATTCCCAACCAATGTAAAAAAAAAAAAAAAAAAAAAAGTGTTGTATAATAAAATGTACATTATAATAAATTGTAAATTATAAACTCCACATCAGAACGTAAGGAAAATGCCCAAATCTTGTAGCGGAAGAAAATTATGAAGAATCACCATAAAGGACTGATGCGAAGGACTGTTGCGGTGTGTGGTCCCGGTAATAAATCTCGAGATGAGTAATAAATCCGTTGGTCAGCATATCTTGCCTTCACGCCTGAAAAGTGATTTGGCATAATATTCGAACCTATCAGATAAGGACAACAAATATCATCTTTATTAAAGTCACTTTAATAAAGGGATACGACAAAAGATGGTGGAGGAATAATGGTACGCATTATTAGTGAATAGTAGTGTGCATTATTGTAAAGAATCGAATCTTTTACTTTTCGTACATTTTATTTTTTGTAATCATTTTATCTTTTGTCATAACAATCCAGTCAGGGGTCTTGTCCTGTCGGATTGAATCTTATCTTTTAGTTTTTTGCATTGTATTGTAATTTCAAATCCGGAGTCTATAAAAGACTTCAATCTTGTAATCAAAGGGCATCGGAAAACTTTCAAGCTTTCTTCTAAAGTTTGAAATACTTCCACGCTCTCTTAGCCTTGTAAACGATCCTAATTCTCTTCGCGGTATATCGAGGAGCAATTGAATTGGCCTAGCTTTTGTTGGAATTTTCTCTTCATTGAAGTCTTTGGTATAAGGGAGATTAACTATATGTTGTTTTCTTTTCCAAAAGGCATTTGGAAGATTTGAACAAACCTCATTTTCTAATTTTGCTTTGAAATTAGATTATACCGCGAAGAGAATTAGGATCGTTTACAAGGCTAAGAGAGCGTGGAAGTATTTCAAACTTTAGAAGAAAGCTTGAAAGTTTTCCGATGCCCTTTGATTACAAGATTGAAGTCTTTTATAAACTCCGGATTTGAAATTACAATACAATGCAAAAAACTAAAAGATAAGATTCAATCCGACAGGACAAGACCCCTGACTGGATTGTTATGA

mRNA sequence

ATGAGTGATCAGCGAGGCAAAGCCTCATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATTCCAGCTCCCATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCAATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTGCCGTTACACCAATGAGACCTTCTGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCACTTTCGGCCTATCAGAAGAAATCTTTCTAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTTTCAAACCCCTTGGATATTCTGTTGGAATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTCAATTCTAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCCTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGATCCGTTTTTAGATTCCCAACCAATCTTGAAAGTTTTCCGATGCCCTTTGATTACAAGATTGAAGTCTTTTATAAACTCCGGATTTGAAATTACAATACAATGCAAAAAACTAAAAGATAAGATTCAATCCGACAGGACAAGACCCCTGACTGGATTGTTATGA

Coding sequence (CDS)

ATGAGTGATCAGCGAGGCAAAGCCTCATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATTCCAGCTCCCATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCAATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTGCCGTTACACCAATGAGACCTTCTGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCACTTTCGGCCTATCAGAAGAAATCTTTCTAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTTTCAAACCCCTTGGATATTCTGTTGGAATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTCAATTCTAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCCTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGATCCGTTTTTAGATTCCCAACCAATCTTGAAAGTTTTCCGATGCCCTTTGATTACAAGATTGAAGTCTTTTATAAACTCCGGATTTGAAATTACAATACAATGCAAAAAACTAAAAGATAAGATTCAATCCGACAGGACAAGACCCCTGACTGGATTGTTATGA

Protein sequence

MSDQRGKASSSKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIPTTFVEATFGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDDEYDINDPFLDSQPILKVFRCPLITRLKSFINSGFEITIQCKKLKDKIQSDRTRPLTGLL

Homology

[Close]

BLAST of Tan0008588 vs. NCBI nr
Match: KAA0040832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 9.4e-31
Identity = 72/174 (41.38%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + 
Sbjct: 299 FGLSEEIFSVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLESSGNFKALS 358

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 359 KSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVISTLAGASTQQ 418

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 419 ELNSVVNNVVVNLSDDNDDLLEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 472

[Close]

BLAST of Tan0008588 vs. NCBI nr
Match: KAA0040832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 7.0e-02
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 11  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLM 70
           S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+
Sbjct: 41  SRKKSPAQSS-APSPMSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALL 100

Query: 71  RPTAVTPMRPSVSPTTPSSSQQGSSIP 98
            P+   P  P+    +P++S   S+IP
Sbjct: 101 CPSG--PTAPNKRAASPAASSSRSAIP 124

HSP 2 Score: 145.2 bits (365), Expect = 9.4e-31
Identity = 72/174 (41.38%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + 
Sbjct: 299 FGLSEEIFSVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLESSGNFKALS 358

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 359 KSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVISTLAGASTQQ 418

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 419 ELNSVVNNVVVNLSDDNDDLLEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 472

[Close]

BLAST of Tan0008588 vs. NCBI nr
Match: TYK17808.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 7.0e-02
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 11  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLM 70
           S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+
Sbjct: 41  SRKKSPAQSS-APSPMSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALL 100

Query: 71  RPTAVTPMRPSVSPTTPSSSQQGSSIP 98
            P+   P  P+    +P++S   S+IP
Sbjct: 101 CPSG--PTAPNKRAASPAASSSRSAIP 124

HSP 2 Score: 142.5 bits (358), Expect = 6.1e-30
Identity = 72/174 (41.38%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + 
Sbjct: 245 FGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALS 304

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 305 KSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQ 364

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 365 EFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 418

[Close]

BLAST of Tan0008588 vs. NCBI nr
Match: KAA0032923.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 6.1e-30
Identity = 72/174 (41.38%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + 
Sbjct: 245 FGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALS 304

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 305 KSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQ 364

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 365 EFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYVGLDINDPFLDTQP 418

[Close]

BLAST of Tan0008588 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 7.9e-30
Identity = 71/174 (40.80%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + 
Sbjct: 245 FGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALS 304

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 305 KSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQ 364

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +   ++N V          +    SP +    +D +Y      DINDPFLD+QP
Sbjct: 365 EFNSVVNNVVVNLSDDNDDLPEDVSPASVNNADDFDYDPYEGLDINDPFLDTQP 418

[Close]

BLAST of Tan0008588 vs. ExPASy TrEMBL
Match: A0A5A7TBK1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00520 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.5e-31
Identity = 72/174 (41.38%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + 
Sbjct: 299 FGLSEEIFSVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLESSGNFKALS 358

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 359 KSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVISTLAGASTQQ 418

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 419 ELNSVVNNVVVNLSDDNDDLLEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 472

[Close]

BLAST of Tan0008588 vs. ExPASy TrEMBL
Match: A0A5A7TBK1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00520 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-02
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 11  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLM 70
           S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+
Sbjct: 41  SRKKSPAQSS-APSPMSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALL 100

Query: 71  RPTAVTPMRPSVSPTTPSSSQQGSSIP 98
            P+   P  P+    +P++S   S+IP
Sbjct: 101 CPSG--PTAPNKRAASPAASSSRSAIP 124

HSP 2 Score: 145.2 bits (365), Expect = 4.5e-31
Identity = 72/174 (41.38%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + 
Sbjct: 299 FGLSEEIFSVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLESSGNFKALS 358

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 359 KSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVISTLAGASTQQ 418

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 419 ELNSVVNNVVVNLSDDNDDLLEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 472

[Close]

BLAST of Tan0008588 vs. ExPASy TrEMBL
Match: A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-02
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 11  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLM 70
           S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+
Sbjct: 41  SRKKSPAQSS-APSPMSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALL 100

Query: 71  RPTAVTPMRPSVSPTTPSSSQQGSSIP 98
            P+   P  P+    +P++S   S+IP
Sbjct: 101 CPSG--PTAPNKRAASPAASSSRSAIP 124

HSP 2 Score: 142.5 bits (358), Expect = 2.9e-30
Identity = 72/174 (41.38%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + 
Sbjct: 245 FGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALS 304

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 305 KSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQ 364

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 365 EFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 418

[Close]

BLAST of Tan0008588 vs. ExPASy TrEMBL
Match: A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-30
Identity = 72/174 (41.38%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + 
Sbjct: 245 FGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALS 304

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 305 KSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQ 364

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 365 EFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYVGLDINDPFLDTQP 418

[Close]

BLAST of Tan0008588 vs. ExPASy TrEMBL
Match: A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.8e-30
Identity = 71/174 (40.80%), Postives = 109/174 (62.64%), Query Frame = 0


Query: 105 FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIV 164
           FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + 
Sbjct: 299 FGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSENFKALS 358

Query: 165 KVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEA 224
           K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++ LA  +T+ 
Sbjct: 359 KSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQ 418

Query: 225 DLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP 265
           +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Sbjct: 419 EFNYVVNNVVVNRSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 472

The following BLAST results are available for this feature:

BLAST of Tan0008588 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008588 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040832.1	9.4e-31	41.38	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0040832.1	7.0e-02	41.38	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK17808.1	7.0e-02	41.38	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0032923.1	6.1e-30	41.38	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0063832.1	7.9e-30	40.80	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0008588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBK1	4.5e-31	41.38	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TBK1	3.4e-02	41.38	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D2Q6	3.4e-02	41.38	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SR64	2.9e-30	41.38	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE...	[more]
A0A5A7U3G5	3.8e-30	40.80	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE...	[more]

Pages

BLAST of Tan0008588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008588.1	Tan0008588.1	mRNA