Tan0008534 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCAATTTTTTCTCTCTAAAATGAAAATGGCTGGTCCATCTTCACCAAAGATCCTTCCTTCTCTCCAAATTTTCTCAGTCAAATCCTCAAATTCTTCTACCTTAATTTTTGTAAAGTTCAAAACTTTCATTCACACTATCATCTTCTCTCAATTGTGTCGGTTGGCTCGGGCAATCTCCCGAGTCAAGTCGACGGTGGTTCAGGTTTTGAAAAAAAGTTATCACGTCAAGAACAAGAACAAGAACAAGATCTTCTTTGGGTCATTTAGGCTCCATTACAACTGGTGCTCTTCTCACGTAATGCCCATGCCGGACCCCGGGTGGGAAGGTCATTTTTACTATGATGCTGCCACTGCAGCTACCACAGACAGCTCGCAGCTATCCGGATATCTGCAATGGTTGGAGGAGAGAAAGAGTGAGACAACGGTGGTAGCGACAGCGACAGAGATGAATGAGATCGATAAATTGGCCGAGATGTTCATAGCAAGCTGCCATGAGAAATTCAGGCTGGAGAAACAGGAATCTGCTAGGAGATTTCAAGAGATGATGGCTAGAAGCATGTGAAGAAAATTTGAG CTCAATTTTTTCTCTCTAAAATGAAAATGGCTGGTCCATCTTCACCAAAGATCCTTCCTTCTCTCCAAATTTTCTCAGTCAAATCCTCAAATTCTTCTACCTTAATTTTTGTAAAGTTCAAAACTTTCATTCACACTATCATCTTCTCTCAATTGTGTCGGTTGGCTCGGGCAATCTCCCGAGTCAAGTCGACGGTGGTTCAGGTTTTGAAAAAAAGTTATCACGTCAAGAACAAGAACAAGAACAAGATCTTCTTTGGGTCATTTAGGCTCCATTACAACTGGTGCTCTTCTCACGTAATGCCCATGCCGGACCCCGGGTGGGAAGGTCATTTTTACTATGATGCTGCCACTGCAGCTACCACAGACAGCTCGCAGCTATCCGGATATCTGCAATGGTTGGAGGAGAGAAAGAGTGAGACAACGGTGGTAGCGACAGCGACAGAGATGAATGAGATCGATAAATTGGCCGAGATGTTCATAGCAAGCTGCCATGAGAAATTCAGGCTGGAGAAACAGGAATCTGCTAGGAGATTTCAAGAGATGATGGCTAGAAGCATGTGAAGAAAATTTGAG ATGAAAATGGCTGGTCCATCTTCACCAAAGATCCTTCCTTCTCTCCAAATTTTCTCAGTCAAATCCTCAAATTCTTCTACCTTAATTTTTGTAAAGTTCAAAACTTTCATTCACACTATCATCTTCTCTCAATTGTGTCGGTTGGCTCGGGCAATCTCCCGAGTCAAGTCGACGGTGGTTCAGGTTTTGAAAAAAAGTTATCACGTCAAGAACAAGAACAAGAACAAGATCTTCTTTGGGTCATTTAGGCTCCATTACAACTGGTGCTCTTCTCACGTAATGCCCATGCCGGACCCCGGGTGGGAAGGTCATTTTTACTATGATGCTGCCACTGCAGCTACCACAGACAGCTCGCAGCTATCCGGATATCTGCAATGGTTGGAGGAGAGAAAGAGTGAGACAACGGTGGTAGCGACAGCGACAGAGATGAATGAGATCGATAAATTGGCCGAGATGTTCATAGCAAGCTGCCATGAGAAATTCAGGCTGGAGAAACAGGAATCTGCTAGGAGATTTCAAGAGATGATGGCTAGAAGCATGTGA MKMAGPSSPKILPSLQIFSVKSSNSSTLIFVKFKTFIHTIIFSQLCRLARAISRVKSTVVQVLKKSYHVKNKNKNKIFFGSFRLHYNWCSSHVMPMPDPGWEGHFYYDAATAATTDSSQLSGYLQWLEERKSETTVVATATEMNEIDKLAEMFIASCHEKFRLEKQESARRFQEMMARSM Homology
BLAST of Tan0008534 vs. NCBI nr
Match: XP_038890518.1 (uncharacterized protein LOC120080048 [Benincasa hispida]) HSP 1 Score: 297.4 bits (760), Expect = 8.6e-77 Identity = 157/185 (84.86%), Postives = 164/185 (88.65%), Query Frame = 0
BLAST of Tan0008534 vs. NCBI nr
Match: XP_011655408.1 (uncharacterized protein LOC105435523 [Cucumis sativus] >KGN51368.1 hypothetical protein Csa_008863 [Cucumis sativus]) HSP 1 Score: 291.2 bits (744), Expect = 6.1e-75 Identity = 155/186 (83.33%), Postives = 161/186 (86.56%), Query Frame = 0
BLAST of Tan0008534 vs. NCBI nr
Match: XP_022961611.1 (uncharacterized protein LOC111462262 [Cucurbita moschata] >KAG6602421.1 hypothetical protein SDJN03_07654, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74 Identity = 154/182 (84.62%), Postives = 162/182 (89.01%), Query Frame = 0
BLAST of Tan0008534 vs. NCBI nr
Match: XP_023548199.1 (uncharacterized protein LOC111806908 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548209.1 uncharacterized protein LOC111806908 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74 Identity = 152/183 (83.06%), Postives = 161/183 (87.98%), Query Frame = 0
BLAST of Tan0008534 vs. NCBI nr
Match: KAG7033099.1 (hypothetical protein SDJN02_07152, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 288.9 bits (738), Expect = 3.0e-74 Identity = 153/182 (84.07%), Postives = 161/182 (88.46%), Query Frame = 0
BLAST of Tan0008534 vs. ExPASy TrEMBL
Match: A0A0A0KP26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523130 PE=4 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 3.0e-75 Identity = 155/186 (83.33%), Postives = 161/186 (86.56%), Query Frame = 0
BLAST of Tan0008534 vs. ExPASy TrEMBL
Match: A0A6J1HAU6 (uncharacterized protein LOC111462262 OS=Cucurbita moschata OX=3662 GN=LOC111462262 PE=4 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 5.1e-75 Identity = 154/182 (84.62%), Postives = 162/182 (89.01%), Query Frame = 0
BLAST of Tan0008534 vs. ExPASy TrEMBL
Match: A0A5D3BVA7 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00500 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73 Identity = 153/187 (81.82%), Postives = 160/187 (85.56%), Query Frame = 0
BLAST of Tan0008534 vs. ExPASy TrEMBL
Match: A0A1S3C8P2 (uncharacterized protein LOC103498096 OS=Cucumis melo OX=3656 GN=LOC103498096 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73 Identity = 153/187 (81.82%), Postives = 160/187 (85.56%), Query Frame = 0
BLAST of Tan0008534 vs. ExPASy TrEMBL
Match: A0A6J1JV22 (uncharacterized protein LOC111487754 OS=Cucurbita maxima OX=3661 GN=LOC111487754 PE=4 SV=1) HSP 1 Score: 282.0 bits (720), Expect = 1.8e-72 Identity = 150/182 (82.42%), Postives = 161/182 (88.46%), Query Frame = 0
BLAST of Tan0008534 vs. TAIR 10
Match: AT3G57950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 129.0 bits (323), Expect = 3.8e-30 Identity = 82/183 (44.81%), Postives = 110/183 (60.11%), Query Frame = 0
BLAST of Tan0008534 vs. TAIR 10
Match: AT5G06790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 125.9 bits (315), Expect = 3.2e-29 Identity = 84/198 (42.42%), Postives = 108/198 (54.55%), Query Frame = 0
BLAST of Tan0008534 vs. TAIR 10
Match: AT2G42180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 77.8 bits (190), Expect = 9.9e-15 Identity = 65/183 (35.52%), Postives = 92/183 (50.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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