Tan0008521 (gene) Snake gourd v1

Overview


Name	Tan0008521
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein ligase isoform X1
Location	LG10: 2084836 .. 2088791 (-)
RNA-Seq Expression	Tan0008521
Synteny	Tan0008521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGGCGCCACTTTCTTTCTCAGGTGATTCTCTCGGTTCGTTTCATTTTCATTCGATTGAAGTTCGTATTTAATCGCATTTGTTCTTAATCGAATCGTTTCATTTTCTCTGAGTTCTCATTTTGAGCTTTTGGAGTTTTGGGGTTTGTTTGTGTTATTTGCTGATGATTCTGTGATCTGGGTTTGGCTTGTTTTGCTGATTTGTGGATTCAATCTGTGTTGGAAATGGAATTTCTCATCATTGTTCTTGATTGGAGCTGATTGTGTATTTATGTCATGAAGTTGTAAATGAGTAAAAGTTTTTTTTAGTTGAAAATGATTTGTTTACAAGTGATTTAGTAAAAGGATGTCTGGTTTTACACTTTTAAATACAATTTTCACACCATCAAATCGATTTTGAATGAAGATATATTTCACAGTGATTTTGAACCTGGCAAAAGTCACTTTCAACCATTTCAAAATTATTGGCCTCTTAAATACTTTTTGTTTTCCCTGGGGTCTCAAGCAACTGAGGATTAGAGAGAGATTTGAAGTGGCTTTAAGATCTTTGATGGAGCTCTAGCTGTGGTGGATTAGCAAATAGTGGTAGTGGTGGAAGCAAAAATGTAAGTGGTTCGTTGGTTCTAACTTTTACCAAGTGTATTTTAATGGCTACCTTTGAAACGTCCTTTCTGTTCATTTGAAAGATGGAGATGTTTCTCTTATTTTCTTTTCAATCTTGGTAGTCAGTGGAAGTAGGTTGACGGGGCATTTGTTTTGGAAAAATCACTTCTCAAAGCCCTGTTGTTTTCATTCATTTATTTTAGGTTAAATTATAAAAATACATCTAAACTTTTGCCTCTTGTTTTAAAAATATCCCTATTCTTTCATAAGTTATAACAAGAGTCTCTTGACCTTTCATAAAGGTGTCAAAACTATCATTTTGAGTAAAAATCTGTTAGAATGGTGGACGAAAAATTGACATGGCAATGATCTAAAACGACGTGGCGGTGACTAGATTAAGTTTGAATGACATTCAAACACCTTAGCTTTTTGTTCAATATTCTAACTTTTTTTTTTGTACTCTAAGGATAGTTTTGAAATATTTATAAAAGGTTAAAGATAATATTGCAACTTTTGGGATATTTTTGAAACAAGGAGCAAAGTTTAGAGGTATTTTTTTAAAAGAATTATTTTAGCATTGATTTTACCAAATCAAAGTCCAGTGAAGACAATATCTATATGTAAAGTCGTGTTGATTTGAAGTATTTGTTTGAAGTTTGAATCCTACCTCTCCCACTTGCATCCTAACTATATGTTCATTATGAGCCATTCAGTGGTTATTTGCAGTATGGTTTCTCTCAACTTTAAGTCTAGTTGATTTGAGTTAACCATATGAAGTTTAAATCCCGCCATCTTCACCTGTATCTTAATTGAAAAAAATAAAACAGATGGTACCTACTCGGGTTTTTTACGCTTGGTGCTAAGATATTTGGTAGTAATGCGTAATTTGGCTATCTGATTGTAAGATATTCATCCATTGTTTATATCTCACCATCTCTATTCGTTTATATCCGATATTTATATCTATCTGTTGATCATGAGCCGTGCTGAGATATATGGTGGTCATTTACAGTATGGCTAGAGTTCCTCCTTTCTACATCCAGGACTATTTGCCCTCACTAGTCTGTATTGTTGTTATATTGAAGCTGATATACAGTAGCAAATATATTGTGGTTGTTGGCTAATGACGTTGTCATTAGTTTTTTTGTTTTTTTGGAACTTTTGAGTCATGAGCATTAGATTTGTTGATTAACCAGACATTTTGGAAGCCATGATCGTAGTCATGTTCGAGGAAAACCAGTCCTTTCTGGTGATTAAGTTTTTAGAATTTGCATATGCCAATTTGGTTTCAAGTTTCAACATTGATGAAATGAAACAAAATGTTGCTCCCTATCTTCAAACTGTAGACTGGCTTCCCTGTCTCCTCTCTTGGGAAAGAATTTTGAGCTGCATATCTTATAATGTTCAATGGATTAGGTCTTAGTTTTTGTACTTCTCGTCTTTGTGTTTCCTGTCGATTTGTATTGCTTCTTCTTCCTTTTCGTCTGTTCTCGACGTCTAATGTACGACACTATGCCAGATAACAGGAAACCATGTTCTAACAGCTTCTGCTTTGGATCAAAGGAATCATCAAAGAATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATGTTAGTTCATTTGCCTTTCCACACGATCATGACCAATTCTTGAACCTGTTCTCTTTGCCAATACTAAGTTCCAAAATATTCATTCCTTTCTGCAGTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGGTGAGCTGAATCGGGTACCTCGATTCTGCATCATTTTTCTTTTCACTCACTAGCTCTTTTGAACTTAGATCTAATCCACAATTCATATCTAATTCTAACATTGTATCTGCTATGTAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGTTTGTTCTAACACGCCACGAGCATGAGATCAAATTCAAGTTTCGACCTTGCTAACCATAATGGCAGTAGACAACATCCTATTTTTGTTCATTAACAACATACACTCTCCATCTCATGCTGGTTACTAAAATGTGAAGCAACATTGTCTGTTATTTACATTGTCATAGATGATGATTATGGAAAAAAAAAAAACCTTACCATATGGTTTATGATTCGTTCACACTTGTATAAAACTGATCAAATTTCTGCTCGATTTTCGATACAGGAGATGATATTTGAACTACCTTGAGTCTTGCAGTAGTCCTTTAAATTCAAGCTTGAGCTCAGTTCACCACTGGTGGATGGTGCTTTTCTTTGTTCAATTACAGGTTCATTTTCAAAACTATGGCTGTATAGATACGTCGATCGCTTCGTAGCTGCAAATTCGTGATGTAAATTGTCGTAGTCAGTCGATTCGATACATCGAGGAAGAAATAATTATCTGATACAACAGTGCTTCCTCATGTTGCTGGATCTTCATGCATACTCATTATTTTTTCAATCTTTGATCATCAATTCTAAAGGAACTCCTCCTGGCTTACAAGACTCAAAAAAGAGTATTAAAGATTAATACATTCTCTGTAAGATGAGATCTGACCTTTTGGCTTTGAAAATCTTGCCTGTAAAATGTTTCTCAAATTCTATCTTCTCCAGCTTTGTGATAACTAATATTGTGCAGTTTTTAGATAATGTTTAAAAGAATTTATAGAAAAATTTAAATATATCATAACCTAATAGTTTGGACTTT

mRNA sequence

ACCGGCGCCACTTTCTTTCTCAGCAACTGAGGATTAGAGAGAGATTTGAAGTGGCTTTAAGATCTTTGATGGAGCTCTAGCTGTGGTGGATTAGCAAATAGTGGTAGTGGTGGAAGCAAAAATATAACAGGAAACCATGTTCTAACAGCTTCTGCTTTGGATCAAAGGAATCATCAAAGAATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGAGATGATATTTGAACTACCTTGAGTCTTGCAGTAGTCCTTTAAATTCAAGCTTGAGCTCAGTTCACCACTGGTGGATGGTGCTTTTCTTTGTTCAATTACAGGTTCATTTTCAAAACTATGGCTGTATAGATACGTCGATCGCTTCGTAGCTGCAAATTCGTGATGTAAATTGTCGTAGTCAGTCGATTCGATACATCGAGGAAGAAATAATTATCTGATACAACAGTGCTTCCTCATGTTGCTGGATCTTCATGCATACTCATTATTTTTTCAATCTTTGATCATCAATTCTAAAGGAACTCCTCCTGGCTTACAAGACTCAAAAAAGAGTATTAAAGATTAATACATTCTCTGTAAGATGAGATCTGACCTTTTGGCTTTGAAAATCTTGCCTGTAAAATGTTTCTCAAATTCTATCTTCTCCAGCTTTGTGATAACTAATATTGTGCAGTTTTTAGATAATGTTTAAAAGAATTTATAGAAAAATTTAAATATATCATAACCTAATAGTTTGGACTTT

Coding sequence (CDS)

ATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGAGATGATATTTGAACTACCTTGA

Protein sequence

MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKEMIFELP

Homology

[Close]

BLAST of Tan0008521 vs. ExPASy Swiss-Prot
Match: Q2HIJ8 (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.6e-47
Identity = 97/190 (51.05%), Postives = 126/190 (66.32%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGR-DLDLDLSIPNTY 60
           MGGCC S+RKSH+ GTP YYYCP + EE   S  R+G  S        D+ L+ SIP+T+
Sbjct: 1   MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query: 61  RAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPR 120
            A P PLPYD++L  PQ  D  SIK  + G SF+T +  + +GE D K+  S ++   PR
Sbjct: 61  CA-PAPLPYDLLLGRPQCTDSESIKGRMSGSSFETLATCEDLGESDCKTLASSVILS-PR 120

Query: 121 KLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDAC 180
           K + SK +G     L+ EEED CPIC EDY+ E+P + TKC+H FHL+CLLEW ERSD C
Sbjct: 121 KSDFSKHQG--LKILVDEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRC 180

Query: 181 PICDKEMIFE 190
           PICDKE++F+
Sbjct: 181 PICDKEVVFD 186

[Close]

BLAST of Tan0008521 vs. ExPASy Swiss-Prot
Match: Q8LE94 (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.9e-19
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 52  DLSIPNTYRAPPTPLPYDVVLRC--------------------PQPKDLNSIKET--ICG 111
           D  +   +R+ P PLPYD   R                     P   D ++  E+  + G
Sbjct: 70  DNFLSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGG 129

Query: 112 CSFKTSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKG----HDTPTLIAEEEDVCPIC 171
           C +  + +  T+ + DSK + S        ++  S+SK      +   +++E+EDVCP C
Sbjct: 130 CKWANNKS--TLSDKDSKEEYS---SKSSLRILRSRSKSIMADSENMYILSEDEDVCPTC 189

Query: 172 LEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKEMIF 189
           LE+Y SE+P+I TKC HHFHL+C+ EW ERS+ CP+C K M F
Sbjct: 190 LEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEF 227

[Close]

BLAST of Tan0008521 vs. ExPASy Swiss-Prot
Match: Q93ZF6 (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.9e-15
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 137 EEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKEMI 188
           E  D CPICLE+Y  ++P++ TKC H FHLAC+L W ERS+ACP+CDKE++
Sbjct: 99  EAIDECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDKELV 149

[Close]

BLAST of Tan0008521 vs. ExPASy Swiss-Prot
Match: Q4TU14 (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-09
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 139 EDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPIC 183
           +D C ICLE +  + P   T CKH +HL C++EW++RS  CPIC
Sbjct: 43  DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPIC 86

[Close]

BLAST of Tan0008521 vs. ExPASy Swiss-Prot
Match: Q9ZT42 (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.9e-09
Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 0


Query: 122 EHSKSKGHDTPTLIAEE-------EDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTE 181
           E + S+GH T      E       +D C ICLE +    P   T CKH +HL C+LEW +
Sbjct: 6   ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQ 65

Query: 182 RSDACPIC 183
           RS  CP+C
Sbjct: 66  RSSQCPMC 73

[Close]

BLAST of Tan0008521 vs. NCBI nr
Match: XP_022147277.1 (probable E3 ubiquitin-protein ligase RHB1A [Momordica charantia])

HSP 1 Score: 360.9 bits (925), Expect = 6.7e-96
Identity = 167/190 (87.89%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTRKSHVNGTP YYYCPLAMEERESSEIRSGSASML NAG D DLDLSIPNTYR
Sbjct: 1   MGGCCCSTRKSHVNGTPVYYYCPLAMEERESSEIRSGSASMLLNAGHDSDLDLSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           APPTPLPYD+V RCPQ KD NSIKETICGCSFKTS A K VGE D+KSQDSPLLGGPPRK
Sbjct: 61  APPTPLPYDMVFRCPQSKDFNSIKETICGCSFKTSPAAKIVGEPDNKSQDSPLLGGPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACP 180
           LEHSK KG++TPTL+AEEED CPICLE+Y+SEHPE  TKCKHHFHLACLLEWTERSDACP
Sbjct: 121 LEHSKLKGNNTPTLVAEEEDACPICLEEYDSEHPESITKCKHHFHLACLLEWTERSDACP 180

Query: 181 ICDKEMIFEL 191
           ICD+EMIFEL
Sbjct: 181 ICDEEMIFEL 190

[Close]

BLAST of Tan0008521 vs. NCBI nr
Match: XP_022980128.1 (probable E3 ubiquitin-protein ligase RHB1A [Cucurbita maxima] >XP_022980129.1 probable E3 ubiquitin-protein ligase RHB1A [Cucurbita maxima] >XP_022980130.1 probable E3 ubiquitin-protein ligase RHB1A [Cucurbita maxima])

HSP 1 Score: 347.8 bits (891), Expect = 5.9e-92
Identity = 162/191 (84.82%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTRKSH +GTPAYYYCPL+MEERESSEI  GSASML  AG DL+LDLSIPNTYR
Sbjct: 1   MGGCCCSTRKSHSDGTPAYYYCPLSMEERESSEIHGGSASMLLGAGHDLNLDLSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           APPTPLPYD  L+CPQPKDLNS KET CGCSFKTSSA+K VGELD K QDSPLLGGPPRK
Sbjct: 61  APPTPLPYDAALKCPQPKDLNSFKETKCGCSFKTSSALKIVGELDCKFQDSPLLGGPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACP 180
           L+HSKSKG +TPT + EEEDVCPICLE+Y SEHPEI TKCKHHFHLACLLEWTERS+ACP
Sbjct: 121 LDHSKSKG-NTPTPVTEEEDVCPICLEEYGSEHPEIITKCKHHFHLACLLEWTERSNACP 180

Query: 181 ICDKEMIFELP 192
           ICDKE IFELP
Sbjct: 181 ICDKETIFELP 190

[Close]

BLAST of Tan0008521 vs. NCBI nr
Match: XP_022924496.1 (probable E3 ubiquitin-protein ligase RHB1A [Cucurbita moschata] >XP_022924497.1 probable E3 ubiquitin-protein ligase RHB1A [Cucurbita moschata] >XP_022924498.1 probable E3 ubiquitin-protein ligase RHB1A [Cucurbita moschata])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 159/191 (83.25%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTRKS  +GTPAYYYCPL+MEERESSEI  GS SML  AG DL+LDLSIPNTYR
Sbjct: 1   MGGCCCSTRKS--DGTPAYYYCPLSMEERESSEIHGGSGSMLIGAGHDLNLDLSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           APPTPLPYD  L+CPQPKDLNS KET CGCSFKTSSA+K VGELD K QDSPLLGGPPRK
Sbjct: 61  APPTPLPYDAALKCPQPKDLNSFKETKCGCSFKTSSALKIVGELDCKFQDSPLLGGPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACP 180
           L+HSKSKG +TP+ + EEEDVCPICLE+Y SEHPEI TKCKHHFHLACLLEWTERS+ACP
Sbjct: 121 LDHSKSKG-NTPSPVTEEEDVCPICLEEYGSEHPEIITKCKHHFHLACLLEWTERSNACP 180

Query: 181 ICDKEMIFELP 192
           ICDKE IFELP
Sbjct: 181 ICDKETIFELP 188

[Close]

BLAST of Tan0008521 vs. NCBI nr
Match: KAG6582620.1 (putative E3 ubiquitin-protein ligase RHB1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88
Identity = 159/191 (83.25%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTRKS  +GTPAYYYCPL+MEERESSEI  GSASML  AG DL+LDLSIPNTYR
Sbjct: 1   MGGCCCSTRKS--DGTPAYYYCPLSMEERESSEIHGGSASMLLGAGHDLNLDLSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           APPTPLPYD  L+CPQPKDLNS KET CGCSFKTSSA+K VGELD K QDSP LGGPPRK
Sbjct: 61  APPTPLPYDAALKCPQPKDLNSFKETKCGCSFKTSSALKIVGELDCKFQDSPFLGGPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACP 180
           L+HSKSKG +TP  + EEEDVCPICLE+Y SEHPEI TKCKHHFHLACLLEWTERS+ACP
Sbjct: 121 LDHSKSKG-NTPCPVTEEEDVCPICLEEYGSEHPEIITKCKHHFHLACLLEWTERSNACP 180

Query: 181 ICDKEMIFELP 192
           ICDKE IFELP
Sbjct: 181 ICDKETIFELP 188

[Close]

BLAST of Tan0008521 vs. NCBI nr
Match: XP_023527676.1 (probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo] >XP_023527677.1 probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo] >XP_023527678.1 probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.0 bits (855), Expect = 8.8e-88
Identity = 158/191 (82.72%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTRKS  +GTPAYYYCPL+MEERESSEI  GSAS+L  AG DL+LDLSIPNTYR
Sbjct: 1   MGGCCCSTRKS--DGTPAYYYCPLSMEERESSEIHGGSASILLGAGHDLNLDLSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           APPTPLPYD  L+CPQ K+LNS KET CGCSFKTSSA+KTVGELD K QDSPLLGGPPRK
Sbjct: 61  APPTPLPYDAALKCPQLKELNSFKETKCGCSFKTSSALKTVGELDCKFQDSPLLGGPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACP 180
           L+HSKSKG +TPT + EEEDVCPICLE+Y SEHPEI T+CKHHFHLACLLEWTERS+ACP
Sbjct: 121 LDHSKSKG-NTPTPVTEEEDVCPICLEEYGSEHPEIITQCKHHFHLACLLEWTERSNACP 180

Query: 181 ICDKEMIFELP 192
           ICDKE IFELP
Sbjct: 181 ICDKETIFELP 188

[Close]

BLAST of Tan0008521 vs. ExPASy TrEMBL
Match: A0A6J1D1Y3 (probable E3 ubiquitin-protein ligase RHB1A OS=Momordica charantia OX=3673 GN=LOC111016271 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.2e-96
Identity = 167/190 (87.89%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTRKSHVNGTP YYYCPLAMEERESSEIRSGSASML NAG D DLDLSIPNTYR
Sbjct: 1   MGGCCCSTRKSHVNGTPVYYYCPLAMEERESSEIRSGSASMLLNAGHDSDLDLSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           APPTPLPYD+V RCPQ KD NSIKETICGCSFKTS A K VGE D+KSQDSPLLGGPPRK
Sbjct: 61  APPTPLPYDMVFRCPQSKDFNSIKETICGCSFKTSPAAKIVGEPDNKSQDSPLLGGPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACP 180
           LEHSK KG++TPTL+AEEED CPICLE+Y+SEHPE  TKCKHHFHLACLLEWTERSDACP
Sbjct: 121 LEHSKLKGNNTPTLVAEEEDACPICLEEYDSEHPESITKCKHHFHLACLLEWTERSDACP 180

Query: 181 ICDKEMIFEL 191
           ICD+EMIFEL
Sbjct: 181 ICDEEMIFEL 190

[Close]

BLAST of Tan0008521 vs. ExPASy TrEMBL
Match: A0A6J1IYD3 (probable E3 ubiquitin-protein ligase RHB1A OS=Cucurbita maxima OX=3661 GN=LOC111479610 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.8e-92
Identity = 162/191 (84.82%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTRKSH +GTPAYYYCPL+MEERESSEI  GSASML  AG DL+LDLSIPNTYR
Sbjct: 1   MGGCCCSTRKSHSDGTPAYYYCPLSMEERESSEIHGGSASMLLGAGHDLNLDLSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           APPTPLPYD  L+CPQPKDLNS KET CGCSFKTSSA+K VGELD K QDSPLLGGPPRK
Sbjct: 61  APPTPLPYDAALKCPQPKDLNSFKETKCGCSFKTSSALKIVGELDCKFQDSPLLGGPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACP 180
           L+HSKSKG +TPT + EEEDVCPICLE+Y SEHPEI TKCKHHFHLACLLEWTERS+ACP
Sbjct: 121 LDHSKSKG-NTPTPVTEEEDVCPICLEEYGSEHPEIITKCKHHFHLACLLEWTERSNACP 180

Query: 181 ICDKEMIFELP 192
           ICDKE IFELP
Sbjct: 181 ICDKETIFELP 190

[Close]

BLAST of Tan0008521 vs. ExPASy TrEMBL
Match: A0A6J1E9L1 (probable E3 ubiquitin-protein ligase RHB1A OS=Cucurbita moschata OX=3662 GN=LOC111431971 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.0e-89
Identity = 159/191 (83.25%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTRKS  +GTPAYYYCPL+MEERESSEI  GS SML  AG DL+LDLSIPNTYR
Sbjct: 1   MGGCCCSTRKS--DGTPAYYYCPLSMEERESSEIHGGSGSMLIGAGHDLNLDLSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           APPTPLPYD  L+CPQPKDLNS KET CGCSFKTSSA+K VGELD K QDSPLLGGPPRK
Sbjct: 61  APPTPLPYDAALKCPQPKDLNSFKETKCGCSFKTSSALKIVGELDCKFQDSPLLGGPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACP 180
           L+HSKSKG +TP+ + EEEDVCPICLE+Y SEHPEI TKCKHHFHLACLLEWTERS+ACP
Sbjct: 121 LDHSKSKG-NTPSPVTEEEDVCPICLEEYGSEHPEIITKCKHHFHLACLLEWTERSNACP 180

Query: 181 ICDKEMIFELP 192
           ICDKE IFELP
Sbjct: 181 ICDKETIFELP 188

[Close]

BLAST of Tan0008521 vs. ExPASy TrEMBL
Match: A0A1S3AVH0 (E3 ubiquitin-protein ligase At3g02290 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483261 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.4e-83
Identity = 151/191 (79.06%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTR SH+NGTP YYYCP+AMEER +SEI SGS+SML NAG DL+LD SIPNTYR
Sbjct: 1   MGGCCCSTRNSHMNGTPTYYYCPIAMEERMTSEINSGSSSMLLNAGHDLNLDFSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           +PPTPLPYDVVL+ PQ KD NS KE ICGCS KT+SAVK+VGELD KSQDS    GPPRK
Sbjct: 61  SPPTPLPYDVVLKYPQQKDPNSAKERICGCSLKTTSAVKSVGELDRKSQDS----GPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEE-EDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDAC 180
           LEHSKSKG  T T + EE +DVCPICLE+Y+S HPEI TKCKHHFHLACLLEWTERSD C
Sbjct: 121 LEHSKSKGTSTTTPVTEEDQDVCPICLEEYDSVHPEIITKCKHHFHLACLLEWTERSDVC 180

Query: 181 PICDKEMIFEL 191
           PICDKEMIFEL
Sbjct: 181 PICDKEMIFEL 187

[Close]

BLAST of Tan0008521 vs. ExPASy TrEMBL
Match: A0A1S4DSJ0 (E3 ubiquitin-protein ligase At3g02290 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483261 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.6e-81
Identity = 151/198 (76.26%), Postives = 164/198 (82.83%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYR 60
           MGGCCCSTR SH+NGTP YYYCP+AMEER +SEI SGS+SML NAG DL+LD SIPNTYR
Sbjct: 1   MGGCCCSTRNSHMNGTPTYYYCPIAMEERMTSEINSGSSSMLLNAGHDLNLDFSIPNTYR 60

Query: 61  APPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRK 120
           +PPTPLPYDVVL+ PQ KD NS KE ICGCS KT+SAVK+VGELD KSQDS    GPPRK
Sbjct: 61  SPPTPLPYDVVLKYPQQKDPNSAKERICGCSLKTTSAVKSVGELDRKSQDS----GPPRK 120

Query: 121 LEHSKSKGHDTPTLIAEE-EDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDAC 180
           LEHSKSKG  T T + EE +DVCPICLE+Y+S HPEI TKCKHHFHLACLLEWTERSD C
Sbjct: 121 LEHSKSKGTSTTTPVTEEDQDVCPICLEEYDSVHPEIITKCKHHFHLACLLEWTERSDVC 180

Query: 181 PICDK-------EMIFEL 191
           PICDK       EMIFEL
Sbjct: 181 PICDKVCSNKLQEMIFEL 194

[Close]

BLAST of Tan0008521 vs. TAIR 10
Match: AT4G00335.1 (RING-H2 finger B1A )

HSP 1 Score: 189.1 bits (479), Expect = 3.2e-48
Identity = 97/190 (51.05%), Postives = 126/190 (66.32%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGR-DLDLDLSIPNTY 60
           MGGCC S+RKSH+ GTP YYYCP + EE   S  R+G  S        D+ L+ SIP+T+
Sbjct: 1   MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query: 61  RAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPR 120
            A P PLPYD++L  PQ  D  SIK  + G SF+T +  + +GE D K+  S ++   PR
Sbjct: 61  CA-PAPLPYDLLLGRPQCTDSESIKGRMSGSSFETLATCEDLGESDCKTLASSVILS-PR 120

Query: 121 KLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDAC 180
           K + SK +G     L+ EEED CPIC EDY+ E+P + TKC+H FHL+CLLEW ERSD C
Sbjct: 121 KSDFSKHQG--LKILVDEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRC 180

Query: 181 PICDKEMIFE 190
           PICDKE++F+
Sbjct: 181 PICDKEVVFD 186

[Close]

BLAST of Tan0008521 vs. TAIR 10
Match: AT4G00335.2 (RING-H2 finger B1A )

HSP 1 Score: 189.1 bits (479), Expect = 3.2e-48
Identity = 97/190 (51.05%), Postives = 126/190 (66.32%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGR-DLDLDLSIPNTY 60
           MGGCC S+RKSH+ GTP YYYCP + EE   S  R+G  S        D+ L+ SIP+T+
Sbjct: 1   MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query: 61  RAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPR 120
            A P PLPYD++L  PQ  D  SIK  + G SF+T +  + +GE D K+  S ++   PR
Sbjct: 61  CA-PAPLPYDLLLGRPQCTDSESIKGRMSGSSFETLATCEDLGESDCKTLASSVILS-PR 120

Query: 121 KLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDAC 180
           K + SK +G     L+ EEED CPIC EDY+ E+P + TKC+H FHL+CLLEW ERSD C
Sbjct: 121 KSDFSKHQG--LKILVDEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRC 180

Query: 181 PICDKEMIFE 190
           PICDKE++F+
Sbjct: 181 PICDKEVVFD 186

[Close]

BLAST of Tan0008521 vs. TAIR 10
Match: AT4G00335.3 (RING-H2 finger B1A )

HSP 1 Score: 182.6 bits (462), Expect = 3.0e-46
Identity = 95/185 (51.35%), Postives = 121/185 (65.41%), Query Frame = 0


Query: 1   MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGR-DLDLDLSIPNTY 60
           MGGCC S+RKSH+ GTP YYYCP + EE   S  R+G  S        D+ L+ SIP+T+
Sbjct: 1   MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query: 61  RAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPR 120
            A P PLPYD++L  PQ  D  SIK  + G SF+T +  + +GE D K+  S ++   PR
Sbjct: 61  CA-PAPLPYDLLLGRPQCTDSESIKGRMSGSSFETLATCEDLGESDCKTLASSVILS-PR 120

Query: 121 KLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDAC 180
           K + SK +G     L+ EEED CPIC EDY+ E+P + TKC+H FHL+CLLEW ERSD C
Sbjct: 121 KSDFSKHQG--LKILVDEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRC 180

Query: 181 PICDK 185
           PICDK
Sbjct: 181 PICDK 181

[Close]

BLAST of Tan0008521 vs. TAIR 10
Match: AT5G41350.1 (RING/U-box superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-34
Identity = 87/222 (39.19%), Postives = 118/222 (53.15%), Query Frame = 0


Query: 1   MGGCCC--STRKSHVNGTPAYYYCPLAMEER---ESSEIRSGSASMLHNAGRDLDLDLSI 60
           MGGCCC  S+R++ V+  PAYYY P A EER    S+  R+ SA        D +L+ S 
Sbjct: 1   MGGCCCCSSSRRADVDNGPAYYYYPRATEERVPLSSAHNRTSSAISTGVVVVDTNLETSS 60

Query: 61  PNTYRAPPTPLPYDVVLRCPQ-------------------PKDLNSIKETICG------- 120
           P+ Y  PP P P+DV +  PQ                     +  S +ET+ G       
Sbjct: 61  PDAYIPPPLPTPFDVPIGIPQTPASGEEATCVDIREVSVDSANTESAQETVDGITLGVPT 120

Query: 121 -CSFK-TSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKGHDTPTLIAEEEDVCPICLE 180
            CS K T S ++T  +L+S  +  P L           SK    P    EEE+ CPICLE
Sbjct: 121 TCSHKETDSKIQTEIDLESTEEIDPKL-----------SKAVFIP---IEEEEDCPICLE 180

Query: 181 DYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKEMIFE 190
           +Y+ E+P++  KC HHFHLAC+LEW ERS+ CP+C+KEM+F+
Sbjct: 181 EYDIENPKLVAKCDHHFHLACILEWMERSETCPVCNKEMVFD 208

[Close]

BLAST of Tan0008521 vs. TAIR 10
Match: AT5G38895.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-21
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 0


Query: 51  LDLSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIK---------ETICGCSFKTSSAVKTV 110
           LD S+ + Y +PPTPLPYD       P+    +K         E + G +  +S A+   
Sbjct: 69  LDDSLSSVYHSPPTPLPYDA-----DPRYFRFVKGSSHSGEESEPLRGDTEMSSEALGDG 128

Query: 111 GELDSK--SQDSPLLGGPPRKLEHSKSK---GHDTPTLIAEEEDVCPICLEDYNSEHPEI 170
           G   SK  S+D             +KSK   G +     +++ED+CP CL+DY  E+P+I
Sbjct: 129 GAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYYADSDDEDICPTCLDDYTLENPKI 188

Query: 171 NTKCKHHFHLACLLEWTERSDACPICDKEMIFE 190
            TKC HHFHL+C+ EW ERS+ CP+C K M F+
Sbjct: 189 ITKCSHHFHLSCIYEWMERSETCPVCGKVMAFD 216

The following BLAST results are available for this feature:

BLAST of Tan0008521 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2HIJ8	4.6e-47	51.05	Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q8LE94	6.9e-19	34.36	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022...	[more]
Q93ZF6	7.9e-15	60.78	E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ...	[more]
Q4TU14	2.9e-09	50.00	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ...	[more]
Q9ZT42	4.9e-09	41.18	E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ...	[more]

BLAST of Tan0008521 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147277.1	6.7e-96	87.89	probable E3 ubiquitin-protein ligase RHB1A [Momordica charantia]	[more]
XP_022980128.1	5.9e-92	84.82	probable E3 ubiquitin-protein ligase RHB1A [Cucurbita maxima] >XP_022980129.1 pr...	[more]
XP_022924496.1	1.0e-88	83.25	probable E3 ubiquitin-protein ligase RHB1A [Cucurbita moschata] >XP_022924497.1 ...	[more]
KAG6582620.1	1.8e-88	83.25	putative E3 ubiquitin-protein ligase RHB1A, partial [Cucurbita argyrosperma subs...	[more]
XP_023527676.1	8.8e-88	82.72	probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo] >XP_0235...	[more]

BLAST of Tan0008521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1Y3	3.2e-96	87.89	probable E3 ubiquitin-protein ligase RHB1A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1IYD3	2.8e-92	84.82	probable E3 ubiquitin-protein ligase RHB1A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1E9L1	5.0e-89	83.25	probable E3 ubiquitin-protein ligase RHB1A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S3AVH0	5.4e-83	79.06	E3 ubiquitin-protein ligase At3g02290 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S4DSJ0	6.6e-81	76.26	E3 ubiquitin-protein ligase At3g02290 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Tan0008521 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00335.1	3.2e-48	51.05	RING-H2 finger B1A	[more]
AT4G00335.2	3.2e-48	51.05	RING-H2 finger B1A	[more]
AT4G00335.3	3.0e-46	51.35	RING-H2 finger B1A	[more]
AT5G41350.1	2.7e-34	39.19	RING/U-box superfamily protein	[more]
AT5G38895.1	1.5e-21	37.91	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 142..182 e-value: 5.0E-6 score: 36.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 141..182 e-value: 2.3E-11 score: 43.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 142..183 score: 12.194218
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 119..190 e-value: 7.1E-14 score: 52.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..132
None	No IPR available	PANTHER	PTHR46463	ZINC FINGER, RING/FYVE/PHD-TYPE	coord: 1..184
None	No IPR available	PANTHER	PTHR46463:SF42	E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED	coord: 1..184
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 133..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008521.1	Tan0008521.1	mRNA
Tan0008521.2	Tan0008521.2	mRNA
Tan0008521.3	Tan0008521.3	mRNA
Tan0008521.4	Tan0008521.4	mRNA
Tan0008521.5	Tan0008521.5	mRNA
Tan0008521.6	Tan0008521.6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004842	ubiquitin-protein transferase activity