Tan0008391 (gene) Snake gourd v1

Overview


Name	Tan0008391
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	arabinogalactan peptide 23-like
Location	LG06: 4312994 .. 4313176 (-)
RNA-Seq Expression	Tan0008391
Synteny	Tan0008391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAAGTTTGTCTGCGCCGCTCTCTTTGCTGCCGTTGCCGTCACCGCAACCTTGGCCTCCAATGAGTCTCTCACTCCCACCGCCGCGCCGGGCCCGAGCAGCGCTGCCTCCGCCGCTCTTCCTGCCCTTGGATCGCTGGTTGGCGCCTCATTCATCGCCTACTTCTTGAGCTGA

mRNA sequence

ATGGAAATGAAGAAGTTTGTCTGCGCCGCTCTCTTTGCTGCCGTTGCCGTCACCGCAACCTTGGCCTCCAATGAGTCTCTCACTCCCACCGCCGCGCCGGGCCCGAGCAGCGCTGCCTCCGCCGCTCTTCCTGCCCTTGGATCGCTGGTTGGCGCCTCATTCATCGCCTACTTCTTGAGCTGA

Coding sequence (CDS)

ATGGAAATGAAGAAGTTTGTCTGCGCCGCTCTCTTTGCTGCCGTTGCCGTCACCGCAACCTTGGCCTCCAATGAGTCTCTCACTCCCACCGCCGCGCCGGGCCCGAGCAGCGCTGCCTCCGCCGCTCTTCCTGCCCTTGGATCGCTGGTTGGCGCCTCATTCATCGCCTACTTCTTGAGCTGA

Protein sequence

MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYFLS

Homology

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BLAST of Tan0008391 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 7.7e-09
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYF 59
          MEMKK  C  LFAA ++TA +A+ E   P  APGP+SAASAALPALGSLVGAS ++ F
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLF 56

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BLAST of Tan0008391 vs. NCBI nr
Match: XP_038899473.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGAS---FIAY 60
          MEMKK  CAALFAA AV++ +A++ESL+P AAPGPSSAASAALPALGSLVGAS   F+AY
Sbjct: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60

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BLAST of Tan0008391 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAY 60
          MEMKK  CAALFAA  VTA +AS+ESL+P AAPGPSSAASAALPALGSLVGA   SF+AY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

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BLAST of Tan0008391 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 4.6e-11
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY 58
          MEMKK  CAALFAA  VTA +AS+ESL+P AAPGPSSAASAALPALGSLVGAS +++
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSF 57

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BLAST of Tan0008391 vs. NCBI nr
Match: XP_023528634.1 (arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 4.6e-11
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAY 60
          MEMK   CAALFAA AVTA +AS+ESL+P AAPGPSSAASAALPALGSL+GA   SF+AY
Sbjct: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

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BLAST of Tan0008391 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY 58
          MEMKK  CAALFAA  +TA +AS+ESL+P AAPGPSSAASAALPALGSLVGAS +++
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSF 57

[Close]

BLAST of Tan0008391 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAY 60
          MEMKK  CAALFAA  VTA +AS+ESL+P AAPGPSSAASAALPALGSLVGA   SF+AY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

[Close]

BLAST of Tan0008391 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-11
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY 58
          MEMKK  CAALFAA  +TA +AS+ESL+P AAPGPSSAASAALPALGSLVGAS +++
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSF 57

[Close]

BLAST of Tan0008391 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIA 57
          MEMKK  CAALFAA  VTA +AS+ESL+P AAPGPSSAASA LPALGSLVGAS ++
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVS 56

[Close]

BLAST of Tan0008391 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAY 60
          MEMK   C ALF A AVTA +AS+ES +P AAPGPSSAASAALPALGSL+GA   SF+AY
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

[Close]

BLAST of Tan0008391 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYFLS 60
          MEMKK  CAALFAA AV+A +A++ES++P AAPGPSSAASAALP LG+ V +   AYFL+
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASVVSFVAAYFLN 60

[Close]

BLAST of Tan0008391 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-10
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYF 59
          MEMKK  C  LFAA ++TA +A+ E   P  APGP+SAASAALPALGSLVGAS ++ F
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLF 56

[Close]

BLAST of Tan0008391 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.4e-05
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGP-SSAASAALPALGSLVGASFIAYF 59
          MEMKK  C  +FAA ++TA +A+        APGP +S AS A+PALGSLVGAS ++ F
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAE---VGAPAPGPAASGASVAVPALGSLVGASLVSLF 56

The following BLAST results are available for this feature:

BLAST of Tan0008391 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	7.7e-09	63.79	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Tan0008391 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899473.1	2.1e-11	74.60	arabinogalactan protein 23-like [Benincasa hispida]	[more]
XP_023004714.1	2.7e-11	74.60	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7025661.1	4.6e-11	77.19	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023528634.1	4.6e-11	74.60	arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]	[more]
XP_022960230.1	1.0e-10	75.44	arabinogalactan peptide 23-like [Cucurbita moschata]	[more]

BLAST of Tan0008391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX42	1.3e-11	74.60	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4...	[more]
A0A6J1H8I1	5.0e-11	75.44	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE...	[more]
A0A6J1F3F5	1.5e-10	76.79	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]
A0A6J1IYE9	1.2e-09	69.84	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4...	[more]
A0A1S3CDX5	1.4e-08	66.67	arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=...	[more]

BLAST of Tan0008391 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	5.5e-10	63.79	arabinogalactan protein 23	[more]
AT2G41905.1	1.4e-05	52.54	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF12	BNACNNG40600D PROTEIN	coord: 1..58
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008391.1	Tan0008391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane