Tan0008319 (gene) Snake gourd v1

Overview


Name	Tan0008319
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Nodulin-like domain-containing protein
Location	LG01: 114032005 .. 114032485 (+)
RNA-Seq Expression	Tan0008319
Synteny	Tan0008319

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATCACATACTTCAGCTTCCTCTTCTCTCTCATCATCTCTTATTTCTCTCTCTGATCTGATCTCTAAAACAGCATTTCAGACAGAAATGGCCGGAACCAATCTCATCTCTGCCGCCGCGTTCCTGCTCGTTTTAGCTTCTATTACTAATATATCATACATCCAAGGAAGGTTGCTGCCGATGGAGCATCCCGGAATCGATCTCACCGGAAATCTCCACAGCAAAATCGTCGAATCCGCCGCTGTCGCTCCTCTCCAGTCAAGGCCACCGGCATTTCGCCGCTCTCCCATTGCTGTTAGTGCTAGTGATTTGGAGGTGCACGGCGGCGACTTCCGTCCGACCACCCCAGGTCACAGTCCCGGTGCCGGCCACTCCCTTGCGCCGGAGAGCCACGTAGATTCGAAAATCCATTAGAAATCTTATAAATCTTATAATTAGTTGTACGTTCGTAACTAATTAGTTATGTATTCATATTATGAAC

mRNA sequence

GCATCACATACTTCAGCTTCCTCTTCTCTCTCATCATCTCTTATTTCTCTCTCTGATCTGATCTCTAAAACAGCATTTCAGACAGAAATGGCCGGAACCAATCTCATCTCTGCCGCCGCGTTCCTGCTCGTTTTAGCTTCTATTACTAATATATCATACATCCAAGGAAGGTTGCTGCCGATGGAGCATCCCGGAATCGATCTCACCGGAAATCTCCACAGCAAAATCGTCGAATCCGCCGCTGTCGCTCCTCTCCAGTCAAGGCCACCGGCATTTCGCCGCTCTCCCATTGCTGTTAGTGCTAGTGATTTGGAGGTGCACGGCGGCGACTTCCGTCCGACCACCCCAGGTCACAGTCCCGGTGCCGGCCACTCCCTTGCGCCGGAGAGCCACGTAGATTCGAAAATCCATTAGAAATCTTATAAATCTTATAATTAGTTGTACGTTCGTAACTAATTAGTTATGTATTCATATTATGAAC

Coding sequence (CDS)

ATGGCCGGAACCAATCTCATCTCTGCCGCCGCGTTCCTGCTCGTTTTAGCTTCTATTACTAATATATCATACATCCAAGGAAGGTTGCTGCCGATGGAGCATCCCGGAATCGATCTCACCGGAAATCTCCACAGCAAAATCGTCGAATCCGCCGCTGTCGCTCCTCTCCAGTCAAGGCCACCGGCATTTCGCCGCTCTCCCATTGCTGTTAGTGCTAGTGATTTGGAGGTGCACGGCGGCGACTTCCGTCCGACCACCCCAGGTCACAGTCCCGGTGCCGGCCACTCCCTTGCGCCGGAGAGCCACGTAGATTCGAAAATCCATTAG

Protein sequence

MAGTNLISAAAFLLVLASITNISYIQGRLLPMEHPGIDLTGNLHSKIVESAAVAPLQSRPPAFRRSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDSKIH

Homology

[Close]

BLAST of Tan0008319 vs. NCBI nr
Match: KAG6591363.1 (Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-27
Identity = 68/105 (64.76%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 4   TNLISAAAFLLVLASITNISYIQGRLLPMEHPGIDLTGNLHSKIVESAAVAPLQSRPPAF 63
           T + S     L+L+SI NIS+  GRLLP+EHP   + GNLH KIVE+A VAPL SRPPAF
Sbjct: 2   TLINSICMAFLILSSICNISHTHGRLLPVEHP---IVGNLHRKIVETAGVAPLGSRPPAF 61

Query: 64  RRSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDSKIH 109
           +R+  +    D EV GGDFRPTTPGHSPG GHSLAP SHVDSKIH
Sbjct: 62  QRTTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103

[Close]

BLAST of Tan0008319 vs. NCBI nr
Match: KAG7024239.1 (Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 14  LVLASITNISYIQGRLLPMEHPGIDLTGNLHSKIVESAAVAPLQSRPPAFRRSPIAVSAS 73
           L+L+SI NIS+  GRLLP+EHP   + GN H KIVE+A VAPL SRPPAF+R+  +    
Sbjct: 4   LILSSICNISHTHGRLLPVEHP---IVGNHHRKIVETAGVAPLGSRPPAFQRTTSSPGDG 63

Query: 74  DLEVHGGDFRPTTPGHSPGAGHSLAPESHV 104
           D EV GGDFRPTTPGHSPG GHSLAP SH+
Sbjct: 64  DAEVLGGDFRPTTPGHSPGVGHSLAPASHI 90

[Close]

BLAST of Tan0008319 vs. NCBI nr
Match: TYK20222.1 (hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-22
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 6   LISAAAFLLVLASITNISYIQGRLLPMEHPG-IDLTGNLHSKIVESAAVAPLQSRPPAFR 65
           LIS  A +L+L+S  NIS+ Q RLLPME+P  +++  +LH K VE+ AVAPL+S P AF 
Sbjct: 8   LISTFAAILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLKSGPLAFD 67

Query: 66  RSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDSKIH 109
               + +  D+EV GGDFRPTTPGHSPGAGHS+AP SH+DSKIH
Sbjct: 68  HD-TSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Tan0008319 vs. NCBI nr
Match: KAA0064365.1 (hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 6   LISAAAFLLVLASITNISYIQGRLLPMEHPG-IDLTGNLHSKIVESAAVAPLQSRPPAFR 65
           LIS  A +L+L+S  NIS+ Q RLLP+E+P  +++  ++H K VE+ AVAPL+S P AF 
Sbjct: 8   LISTFAAILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLKSGPLAFD 67

Query: 66  RSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDSKIH 109
               + +  D+EV GGDFRPTT GHSPGAGHS+AP SH+DSKIH
Sbjct: 68  HD-TSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Tan0008319 vs. NCBI nr
Match: KAG6608491.1 (hypothetical protein SDJN03_01833, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 5.8e-20
Identity = 70/115 (60.87%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MAGTNLIS--AAAFLLVLASI--TNISYIQG-RLLPM--EHPGIDLTGNLHSKIVESAAV 60
           MAG NLIS  AAA LLVLASI   NI + QG RLLPM  EHP +                
Sbjct: 1   MAGINLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQEHPAVH--------------- 60

Query: 61  APLQSRPPAFRRSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDSKIH 109
             L SRP +F  SPIA  A+D++VHGGDFRPTTPGHSPGAGH LAP+SHVDSKIH
Sbjct: 61  --LNSRPQSFHPSPIA--ATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96

[Close]

BLAST of Tan0008319 vs. ExPASy TrEMBL
Match: A0A5D3D9H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003590 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 6   LISAAAFLLVLASITNISYIQGRLLPMEHPG-IDLTGNLHSKIVESAAVAPLQSRPPAFR 65
           LIS  A +L+L+S  NIS+ Q RLLPME+P  +++  +LH K VE+ AVAPL+S P AF 
Sbjct: 8   LISTFAAILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLKSGPLAFD 67

Query: 66  RSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDSKIH 109
               + +  D+EV GGDFRPTTPGHSPGAGHS+AP SH+DSKIH
Sbjct: 68  HD-TSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Tan0008319 vs. ExPASy TrEMBL
Match: A0A5A7VEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00660 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.4e-21
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 6   LISAAAFLLVLASITNISYIQGRLLPMEHPG-IDLTGNLHSKIVESAAVAPLQSRPPAFR 65
           LIS  A +L+L+S  NIS+ Q RLLP+E+P  +++  ++H K VE+ AVAPL+S P AF 
Sbjct: 8   LISTFAAILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLKSGPLAFD 67

Query: 66  RSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDSKIH 109
               + +  D+EV GGDFRPTT GHSPGAGHS+AP SH+DSKIH
Sbjct: 68  HD-TSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Tan0008319 vs. ExPASy TrEMBL
Match: A0A0A0L3I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 6   LISAAAFLLVLASITNISYIQGRLLPMEH-PGIDLTGNLHSKIVESAAVAPLQSRPPAFR 65
           LIS    +L+L+S  ++S+ Q R+ P ++   ++++ +LH KI E+ AVAPL+S P AF 
Sbjct: 8   LISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFD 67

Query: 66  RSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDSKIH 109
           R     + S+ EV GGDFRPTTPGHSPGAGHS+AP SH+DSKIH
Sbjct: 68  RDTF-FTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Tan0008319 vs. ExPASy TrEMBL
Match: A0A0D2RCK2 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G104300 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 1   MAGTNLISAAAFLLVLASITNISYIQGRLL---PMEHPG-IDLTG---NLHSKIVESAAV 60
           MA  NLI AA F+ VL     I++ +GRLL    ++ PG +D+T    +L+  I+E A+ 
Sbjct: 1   MAKINLILAAVFVFVLLFSYRITFTEGRLLKVDKLDGPGNVDITNVVTHLNRDILEEASS 60

Query: 61  APLQSRPPAFRRSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLAPESHVDS 106
           A             +  + +       DF+PTTPGHSPGAGH+  P  + ++
Sbjct: 61  A-----------GHVKGTTTAAAYRYDDFQPTTPGHSPGAGHATGPSGNYNN 101

[Close]

BLAST of Tan0008319 vs. ExPASy TrEMBL
Match: B9HHI1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G042000 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04
Identity = 37/107 (34.58%), Postives = 51/107 (47.66%), Query Frame = 0


Query: 1   MAGTNLISAAAFLLVLASITNISYIQGRLLPMEHPG----------IDLTGNLHSKIVES 60
           MA +NL+SA  FL+++ S   + +I+GR L ++ P           ++    LH      
Sbjct: 1   MAQSNLLSAFVFLVLIFS-HELQFIEGRYLNLKTPNKFLQKEIRRLVESNSKLHVNDNLD 60

Query: 61  AAVAPLQSRPPAFRRSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSL 98
             V   +  PPA     +      L  H  DFRPT PGHSPG GHSL
Sbjct: 61  KPVNATKVAPPAPPAPVVGEPHPSLPGHVDDFRPTAPGHSPGVGHSL 106

[Close]

BLAST of Tan0008319 vs. TAIR 10
Match: AT5G66815.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.2e-04
Identity = 32/97 (32.99%), Postives = 43/97 (44.33%), Query Frame = 0


Query: 10  AAFLLVLASITNISYIQGRLLPMEHPGIDLTGNLHSKIVESAAV--------APLQSRPP 69
           A + L+L      + + GR L ++       G+  SK + + A           +Q  PP
Sbjct: 13  ACYFLMLVFFLGFNCVHGRTLKVDDK--INGGHYDSKTMMALAKHNDMMVDDKAMQFSPP 72

Query: 70  AFRRSPIAVSASDLEVHGGDFRPTTPGHSPGAGHSLA 99
                P      D E    DFRPTTPGHSPG GHSL+
Sbjct: 73  PPPPPPSQSGGKDAE----DFRPTTPGHSPGIGHSLS 103

The following BLAST results are available for this feature:

BLAST of Tan0008319 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008319 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591363.1	6.4e-27	64.76	Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7024239.1	3.3e-23	65.56	Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. arg...	[more]
TYK20222.1	3.6e-22	59.62	hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa]	[more]
KAA0064365.1	1.5e-20	56.73	hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa]	[more]
KAG6608491.1	5.8e-20	60.87	hypothetical protein SDJN03_01833, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0008319 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9H8	1.8e-22	59.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VEP2	7.4e-21	56.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L3I5	6.9e-19	52.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1	[more]
A0A0D2RCK2	4.8e-04	34.82	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G104300 PE=3 ...	[more]
B9HHI1	4.8e-04	34.58	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G042000 PE=3 ...	[more]

BLAST of Tan0008319 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66815.1	6.2e-04	32.99	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008319.1	Tan0008319.1	mRNA