Tan0007547 (gene) Snake gourd v1

Overview


Name	Tan0007547
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG11: 5299244 .. 5299653 (+)
RNA-Seq Expression	Tan0007547
Synteny	Tan0007547

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTCAGAAGTGTATTGGAATGGGTCTAATTTGGGTTGCTTGCTTGCTTCTTGCCATGGTTACAGAAGCAGAAGCTCAGAGCTATGACTATGGCTCCAAGAGTTCAGCTGAGGCCACATCTTCCCATGGAATGCTCATCAAATTTCTGGGTCTTGTTGTTTCCTTTTTTGTTCTCAAAGATATGGTTTGAGTTCTCTGTGTTTCTTGTTCTGTTTTGCAACTTTGAATTTCTTGCTGTTTCTTCTTTAGGATTTGTGTTCTGCTTTGGAGTTTATATGTCTTCATGAGAGGAGAATTGGTGAAATTTGTATTGGGACTGTTGAAGATGAAGTTACTGATTGTGAAATTGAAGTTATTTCTGTATGTGTCTACTGTGTTCTTAGCATTTGGCTCAGTAGAGATTGA

mRNA sequence

ATGGGTCTTCAGAAGTGTATTGGAATGGGTCTAATTTGGGTTGCTTGCTTGCTTCTTGCCATGGTTACAGAAGCAGAAGCTCAGAGCTATGACTATGGCTCCAAGAGTTCAGCTGAGGCCACATCTTCCCATGGAATGCTCATCAAATTTCTGGGTCTTGTTGTTTCCTTTTTTGTTCTCAAAGATATGGATTTGTGTTCTGCTTTGGAGTTTATATGTCTTCATGAGAGGAGAATTGGTGAAATTTGTATTGGGACTGTTGAAGATGAAGTTACTGATTGTGAAATTGAAGTTATTTCTGTATGTGTCTACTGTGTTCTTAGCATTTGGCTCAGTAGAGATTGA

Coding sequence (CDS)

ATGGGTCTTCAGAAGTGTATTGGAATGGGTCTAATTTGGGTTGCTTGCTTGCTTCTTGCCATGGTTACAGAAGCAGAAGCTCAGAGCTATGACTATGGCTCCAAGAGTTCAGCTGAGGCCACATCTTCCCATGGAATGCTCATCAAATTTCTGGGTCTTGTTGTTTCCTTTTTTGTTCTCAAAGATATGGATTTGTGTTCTGCTTTGGAGTTTATATGTCTTCATGAGAGGAGAATTGGTGAAATTTGTATTGGGACTGTTGAAGATGAAGTTACTGATTGTGAAATTGAAGTTATTTCTGTATGTGTCTACTGTGTTCTTAGCATTTGGCTCAGTAGAGATTGA

Protein sequence

MGLQKCIGMGLIWVACLLLAMVTEAEAQSYDYGSKSSAEATSSHGMLIKFLGLVVSFFVLKDMDLCSALEFICLHERRIGEICIGTVEDEVTDCEIEVISVCVYCVLSIWLSRD

Homology

[Close]

BLAST of Tan0007547 vs. NCBI nr
Match: KAA0037478.1 (hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK01954.1 hypothetical protein E5676_scaffold808G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-12
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  MGLQKCIGMGLIWVACLLLAMVTEAEAQSYDYGSKSSAEATSSHGMLIKFLGLVVSFFVL 60
          M LQKC+GM LIWVACLL++  TEAEAQS  YGS  + EA  SH ML+KFLGL+VSF VL
Sbjct: 1  MNLQKCLGMVLIWVACLLISTATEAEAQS--YGSSDAPEALCSHSMLVKFLGLLVSFLVL 60

Query: 61 KDM 64
          K++
Sbjct: 61 KEI 61

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BLAST of Tan0007547 vs. NCBI nr
Match: KAE8648896.1 (hypothetical protein Csa_008661 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 1  MGLQKCIGMGLIWVACLLLAMVTEAEAQSYDYGSKSSAEATSSHGMLIK--FLGLVVSFF 60
          M L+KC+GM LIWVACLL++M TEAEAQS  YGS  + EA  SH ML    F+  VV   
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQS--YGSSDAPEALHSHSMLFNSCFIMRVVVLT 60

Query: 61 VLKDMD 65
          V +  D
Sbjct: 61 VFESAD 64

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BLAST of Tan0007547 vs. ExPASy TrEMBL
Match: A0A5A7T3W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00460 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.9e-12
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  MGLQKCIGMGLIWVACLLLAMVTEAEAQSYDYGSKSSAEATSSHGMLIKFLGLVVSFFVL 60
          M LQKC+GM LIWVACLL++  TEAEAQS  YGS  + EA  SH ML+KFLGL+VSF VL
Sbjct: 1  MNLQKCLGMVLIWVACLLISTATEAEAQS--YGSSDAPEALCSHSMLVKFLGLLVSFLVL 60

Query: 61 KDM 64
          K++
Sbjct: 61 KEI 61

[Close]

BLAST of Tan0007547 vs. ExPASy TrEMBL
Match: A0A0A0KS19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-06
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 1  MGLQKCIGMGLIWVACLLLAMVTEAEAQSYDYGSKSSAEATSSHGMLIK 50
          M L+KC+GM LIWVACLL++M TEAEAQS  YGS  + EA  SH ML K
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQS--YGSSDAPEALHSHSMLFK 47

The following BLAST results are available for this feature:

BLAST of Tan0007547 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007547 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037478.1	8.0e-12	66.67	hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK0195...	[more]
KAE8648896.1	1.5e-05	54.55	hypothetical protein Csa_008661 [Cucumis sativus]	[more]

BLAST of Tan0007547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T3W0	3.9e-12	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KS19	3.2e-06	65.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1	[more]

BLAST of Tan0007547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007547.1	Tan0007547.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane