Tan0007542 (gene) Snake gourd v1

Overview
NameTan0007542
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 73824041 .. 73824283 (+)
RNA-Seq ExpressionTan0007542
SyntenyTan0007542
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTTGCTTTTTTCTTTGCCATTTTGCTTCTTCTTCATATCAACACTCATCGGCTCGAAGGTTGCAGAATAATGAAAGAAGAGAAGCAAAAATGGTCGACGGAGGTGCTTCTGCAGTCGCTGCTGAGGGCGCCGGTTCCTCCCTCTGCCAAAAATGGCAACACCAATATTCCGGTACCGGTCCGGCAAAGGAATTTTGCCGGAAAACCAACGACGGCGCCGCCACACGCCTAA

mRNA sequence

ATGAAGATCCAATTTGCTTTTTTCTTTGCCATTTTGCTTCTTCTTCATATCAACACTCATCGGCTCGAAGGTTGCAGAATAATGAAAGAAGAGAAGCAAAAATGGTCGACGGAGGTGCTTCTGCAGTCGCTGCTGAGGGCGCCGGTTCCTCCCTCTGCCAAAAATGGCAACACCAATATTCCGGTACCGGTCCGGCAAAGGAATTTTGCCGGAAAACCAACGACGGCGCCGCCACACGCCTAA

Coding sequence (CDS)

ATGAAGATCCAATTTGCTTTTTTCTTTGCCATTTTGCTTCTTCTTCATATCAACACTCATCGGCTCGAAGGTTGCAGAATAATGAAAGAAGAGAAGCAAAAATGGTCGACGGAGGTGCTTCTGCAGTCGCTGCTGAGGGCGCCGGTTCCTCCCTCTGCCAAAAATGGCAACACCAATATTCCGGTACCGGTCCGGCAAAGGAATTTTGCCGGAAAACCAACGACGGCGCCGCCACACGCCTAA

Protein sequence

MKIQFAFFFAILLLLHINTHRLEGCRIMKEEKQKWSTEVLLQSLLRAPVPPSAKNGNTNIPVPVRQRNFAGKPTTAPPHA
Homology
BLAST of Tan0007542 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.9 bits (250), Expect = 5.2e-18
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 1  MKIQFAFFFAILLLLHINTHRLEGCRIMKEEKQKWSTEVLLQSLLRAPVPPSAKNGNTNI 60
          MKIQFAF  AIL++L  N H+L+ CR MKE++QKWS  +L QSL RAPVPPSAKNG T I
Sbjct: 1  MKIQFAFLLAILVVL-ANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTI 60

Query: 61 PVPVRQRNFAGKPTTAPPHA 81
          PVP+ QR+F GK T +P H+
Sbjct: 61 PVPLGQRSFVGKSTPSPAHS 79

BLAST of Tan0007542 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 1  MKIQFAFFFAILLLLHINTHRLEGCRIMKEEKQKWSTEVLLQSLLRAPVPPSAKNGNTNI 60
          MKIQFAF  AIL++L  N H+L+ CR MKE+ QKWS  +L QSL RAPVPP+AKNG T I
Sbjct: 1  MKIQFAFLLAILVVL-ANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTI 60

Query: 61 PVPVRQRNFAGKPTTAPPHA 81
          P P+ QR F GK T +P H+
Sbjct: 61 PTPLGQRAFVGKSTPSPAHS 79

BLAST of Tan0007542 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 1  MKIQFAFFFAILLLLHINTHRLEGCRIMKEEKQKWSTEVLLQSLLRAPVPPSAKNGNTNI 60
          MKIQFAF  AI++LL  N H+L+ CR MK+++QKWS  +L QSL RAPVPPSAKNG T I
Sbjct: 1  MKIQFAFLLAIVVLL-ANAHQLQSCRTMKDDRQKWSI-LLQQSLQRAPVPPSAKNGGTTI 60

Query: 61 PVPVRQRNFAGKPTTAPPHA 81
          PVP+ QR F GK T +P H+
Sbjct: 61 PVPLGQRAFVGKSTPSPAHS 78

BLAST of Tan0007542 vs. NCBI nr
Match: KGN57926.1 (hypothetical protein Csa_011112 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-15
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 1  MKIQFAFFFAILLLLHINTHRLEGCRIMKEEKQKWS--TEVLLQSLLRAPVPPSAKNGNT 60
          MKIQF+F  AIL+LL  NTH L+ CR +K+++Q WS   ++L QSL R PVPPSAKNG+T
Sbjct: 1  MKIQFSFLLAILVLL-ANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDT 60

Query: 61 NIPVPVRQRNFAGKPTTA 77
          NIPVPV QR FAGK + A
Sbjct: 61 NIPVPVGQRAFAGKTSAA 77

BLAST of Tan0007542 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 1  MKIQFAFFFAILLLLHINTHRLEGCRIMKEEKQKWSTEVLLQSLLRAPVPPSAKNGNTNI 60
          MKIQFAF  AIL++L  N H+L+ CR MKE++QKWS  +L QSL R PVPPSA+NG T I
Sbjct: 1  MKIQFAFLLAILVVL-ANAHQLQSCRTMKEDRQKWSILLLQQSLKRVPVPPSAQNGGTTI 60

Query: 61 PVPVRQRNFAGKPTTAPPHA 81
          P  + QR F GK T +P H+
Sbjct: 61 PTQLGQRAFVGKSTPSPAHS 79

BLAST of Tan0007542 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.0e-16
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 1  MKIQFAFFFAILLLLHINTHRLEGCRIMKEEKQKWS--TEVLLQSLLRAPVPPSAKNGNT 60
          MKIQF+F  AIL+LL  NTH L+ CR +K+++Q WS   ++L QSL R PVPPSAKNG+T
Sbjct: 1  MKIQFSFLLAILVLL-ANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDT 60

Query: 61 NIPVPVRQRNFAGKPTTA 77
          NIPVPV QR FAGK + A
Sbjct: 61 NIPVPVGQRAFAGKTSAA 77

BLAST of Tan0007542 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 1  MKIQFAFFFAILLLLHINTHRLEGCRIMKEEKQKWSTEVLLQSLLRAPVPPSAKNGNTNI 60
          MKIQF FFFAIL+LL  N H L+ CR MK++++KWS  ++ QSL RAPVPPS ++G+TNI
Sbjct: 1  MKIQFTFFFAILVLL-ANAHHLQSCRTMKDDQRKWSM-LIQQSLQRAPVPPSTRDGDTNI 60

Query: 61 PVPVRQRNFAGKPTTAP 78
          PVP+ Q+ FAGK T  P
Sbjct: 61 PVPLGQQAFAGKSTVPP 75

BLAST of Tan0007542 vs. ExPASy TrEMBL
Match: A0A7J0FJI4 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_13g0002590 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 0

Query: 8  FFAILLLLHINTHRLEGCRIMKEEKQKWSTE--VLLQSLLRAPVPPSAKNGNTNIPV--- 67
          FFA+ LLL    H  E  RI++E K+ W  +  +LLQSL R PVPP+  N  T+IP    
Sbjct: 10 FFALALLLSTKPH--EASRILREGKEDWMKQENLLLQSLERGPVPPTGPNPPTHIPASSN 69

Query: 68 ---PVRQRNFAGKPTTAPPH 80
              + Q+ FAG    +PP+
Sbjct: 70 KFNTISQKGFAGHAMPSPPY 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571503.15.2e-1863.75hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.11.7e-1661.25hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571505.12.2e-1662.50hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57926.11.9e-1562.82hypothetical protein Csa_011112 [Cucumis sativus][more]
KAG6571501.12.4e-1558.75hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LCY59.0e-1662.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
A0A5D3B7771.5e-1561.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J0FJI46.1e-0441.25Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_13g0002590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0007542.1Tan0007542.1mRNA