Tan0007534 (gene) Snake gourd v1

Overview


Name	Tan0007534
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG04: 18150410 .. 18151214 (-)
RNA-Seq Expression	Tan0007534
Synteny	Tan0007534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATTTGGGAGAAGCTCAGTATGTTCTAGGTATCCAGATTGTCCGGAACCGGAAGAACAGAACGTTGGCCATGTCTCAAACGTCTTATATTGATAAGATATTGTCTAGATATAAGATGCAGAACTCCAAGAACGGCTTACTGCCTTTCAGGCATGGGGTTCACCTGTCTAAGGATCAGTGTCCTAAGACTCCTCAAGAGGTTGAGGATATGAGATGTATCCCCTATGCTTCAGCTGTAGGGAGCCTGATGTATGTCCTGTTGTATACTAGGTCTGACATCTGTTATGCAATAGGGATTGTAAGTAGGTATCAATCCAATCCAGGATTAGATCACTGGACAACCGTAAAGGCAATCCTCAAGTATCTTAGGAGAACGAGGAACTACAGCTTAGTGTATGGAAGTGGGGATTTGTTCCTTACAGGATACACAGATTCTGACTTTCAGACCGATAAGGATTCTAGGAAATCCACTTCGGGGTCAGCCTTCATTCTAAAATGAAGGAGCTGTAGTATGGCGAAGCATCAAGCAGGGATGCATCGCTGATTCCACTATGGAAGCAGAGTACGTTGCGGCTTGTGAAGCTGCAAAGGAAGTTGTTTGGCTTAGAAAGTTCATAACCGATTTGGAAGTTGTTCCAAATATGAATTTGTCGATCGCACTGTTTTGTGACAACAGTGGTGCAGTAGCCAACTCCAGAGAGCCTCGGAGCCATAAGAGAGGCAAACACATGGAGCGGAAGTATCACCTAATACGGGAGATTGTGCACCGCATGGACGCGTGGCGATCCACGCGCAGATAG

mRNA sequence

ATGAAAGATTTGGGAGAAGCTCAGTATGTTCTAGGTATCCAGATTGTCCGGAACCGGAAGAACAGAACGTTGGCCATGTCTCAAACGTCTTATATTGATAAGATATTGTCTAGATATAAGATGCAGAACTCCAAGAACGGCTTACTGCCTTTCAGGCATGGGGTTCACCTGTCTAAGGATCAGTGTCCTAAGACTCCTCAAGAGGTTGAGGATATGAGATGTATCCCCTATGCTTCAGCTGTAGGGAGCCTGATGTATGTCCTGTTGTATACTAGGTCTGACATCTGTTATGCAATAGGGATTGTAAGTAGGTATCAATCCAATCCAGGATTAGATCACTGGACAACCGTAAAGGCAATCCTCAAGTATCTTAGGAGAACGAGGAACTACAGCTTAGTGTATGGAAGTGGGGATTTGTTCCTTACAGGATACACAGATTCTGACTTTCAGACCGATAAGGATTCTAGGAAATCCACTTCGGGCATCAAGCAGGGATGCATCGCTGATTCCACTATGGAAGCAGAGTACGTTGCGGCTTGTGAAGCTGCAAAGGAAGTTGTTTGGCTTAGAAAGTTCATAACCGATTTGGAAGTTGTTCCAAATATGAATTTGTCGATCGCACTGTTTTGTGACAACAGTGGTGCAGTAGCCAACTCCAGAGAGCCTCGGAGCCATAAGAGAGGCAAACACATGGAGCGGAAGTATCACCTAATACGGGAGATTGTGCACCGCATGGACGCGTGGCGATCCACGCGCAGATAG

Coding sequence (CDS)

ATGAAAGATTTGGGAGAAGCTCAGTATGTTCTAGGTATCCAGATTGTCCGGAACCGGAAGAACAGAACGTTGGCCATGTCTCAAACGTCTTATATTGATAAGATATTGTCTAGATATAAGATGCAGAACTCCAAGAACGGCTTACTGCCTTTCAGGCATGGGGTTCACCTGTCTAAGGATCAGTGTCCTAAGACTCCTCAAGAGGTTGAGGATATGAGATGTATCCCCTATGCTTCAGCTGTAGGGAGCCTGATGTATGTCCTGTTGTATACTAGGTCTGACATCTGTTATGCAATAGGGATTGTAAGTAGGTATCAATCCAATCCAGGATTAGATCACTGGACAACCGTAAAGGCAATCCTCAAGTATCTTAGGAGAACGAGGAACTACAGCTTAGTGTATGGAAGTGGGGATTTGTTCCTTACAGGATACACAGATTCTGACTTTCAGACCGATAAGGATTCTAGGAAATCCACTTCGGGCATCAAGCAGGGATGCATCGCTGATTCCACTATGGAAGCAGAGTACGTTGCGGCTTGTGAAGCTGCAAAGGAAGTTGTTTGGCTTAGAAAGTTCATAACCGATTTGGAAGTTGTTCCAAATATGAATTTGTCGATCGCACTGTTTTGTGACAACAGTGGTGCAGTAGCCAACTCCAGAGAGCCTCGGAGCCATAAGAGAGGCAAACACATGGAGCGGAAGTATCACCTAATACGGGAGATTGTGCACCGCATGGACGCGTGGCGATCCACGCGCAGATAG

Protein sequence

MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKDQCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAILKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSGIKQGCIADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHKRGKHMERKYHLIREIVHRMDAWRSTRR

Homology

[Close]

BLAST of Tan0007534 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-54
Identity = 112/256 (43.75%), Postives = 159/256 (62.11%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            MKDLG AQ +LG++IVR R +R L +SQ  YI+++L R+ M+N+K    P    + LSK 
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
             CP T +E  +M  +PY+SAVGSLMY ++ TR DI +A+G+VSR+  NPG +HW  VK I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSGI--------------KQGC 180
            L+YLR T    L +G  D  L GYTD+D   D D+RKS++G                Q C
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 181  IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
            +A ST EAEY+AA E  KE++WL++F+ +L +         ++CD+  A+  S+    H 
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHA 1274

Query: 241  RGKHMERKYHLIREIV 243
            R KH++ +YH IRE+V
Sbjct: 1275 RTKHIDVRYHWIREMV 1287

[Close]

BLAST of Tan0007534 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 7.9e-31
Identity = 84/263 (31.94%), Postives = 137/263 (52.09%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVH---L 60
            M DL E ++ +GI+I    +   + +SQ++Y+ KILS++ M+N      P    ++   L
Sbjct: 1114 MTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   SKDQCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTV 120
            + D+   T          P  S +G LMY++L TR D+  A+ I+SRY S    + W  +
Sbjct: 1174 NSDEDCNT----------PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNL 1233

Query: 121  KAILKYLRRTRNYSLVYGSGDLF---LTGYTDSDFQTDKDSRKSTSGI------------ 180
            K +L+YL+ T +  L++     F   + GY DSD+   +  RKST+G             
Sbjct: 1234 KRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1293

Query: 181  ---KQGCIADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANS 240
               +Q  +A S+ EAEY+A  EA +E +WL+  +T + +   +   I ++ DN G ++ +
Sbjct: 1294 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIA 1353

Query: 241  REPRSHKRGKHMERKYHLIREIV 243
              P  HKR KH++ KYH  RE V
Sbjct: 1354 NNPSCHKRAKHIDIKYHFAREQV 1362

[Close]

BLAST of Tan0007534 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.7e-23
Identity = 79/257 (30.74%), Postives = 119/257 (46.30%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            +K+  +  Y LGI+    R  + L +SQ  Y   +L+R  M  +K    P      L+  
Sbjct: 1160 VKEHEDLHYFLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1219

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
               K P   E      Y   VGSL Y L +TR D+ YA+  +S+Y   P  DHW  +K +
Sbjct: 1220 SGTKLPDPTE------YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRV 1279

Query: 121  LKYLRRTRNYSLVYGSGD-LFLTGYTDSDFQTDKDSRKSTSGI--------------KQG 180
            L+YL  T ++ +    G+ L L  Y+D+D+  D D   ST+G               KQ 
Sbjct: 1280 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQK 1339

Query: 181  CIADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSH 240
             +  S+ EAEY +    + E+ W+   +T+L +   ++    ++CDN GA      P  H
Sbjct: 1340 GVVRSSTEAEYRSVANTSSELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFH 1399

Query: 241  KRGKHMERKYHLIREIV 243
             R KH+   YH IR  V
Sbjct: 1400 SRMKHIALDYHFIRNQV 1405

[Close]

BLAST of Tan0007534 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-22
Identity = 83/257 (32.30%), Postives = 117/257 (45.53%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            +KD  E  Y LGI+    R    L +SQ  YI  +L+R  M  +K    P      LS  
Sbjct: 1177 VKDHEELHYFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLY 1236

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
               K     E      Y   VGSL Y L +TR DI YA+  +S++   P  +H   +K I
Sbjct: 1237 SGTKLTDPTE------YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRI 1296

Query: 121  LKYLRRTRNYSLVYGSGD-LFLTGYTDSDFQTDKDSRKSTSGI--------------KQG 180
            L+YL  T N+ +    G+ L L  Y+D+D+  DKD   ST+G               KQ 
Sbjct: 1297 LRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQK 1356

Query: 181  CIADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSH 240
             +  S+ EAEY +    + E+ W+   +T+L +   +     ++CDN GA      P  H
Sbjct: 1357 GVVRSSTEAEYRSVANTSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFH 1416

Query: 241  KRGKHMERKYHLIREIV 243
             R KH+   YH IR  V
Sbjct: 1417 SRMKHIAIDYHFIRNQV 1422

[Close]

BLAST of Tan0007534 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-20
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 72  MRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAILKYLRRTRNYS 131
           M+ +PY SAVG++MY+++ TR D+  A+G++S++ S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 132 LVY-GSGDLFLTGYTDSDFQTDKDSRKSTSGI--------------KQGCIADSTMEAEY 190
           L +  +G   L GY+D+D+  D +SR+STSG               KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

[Close]

BLAST of Tan0007534 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 427.2 bits (1097), Expect = 1.0e-115
Identity = 210/260 (80.77%), Postives = 228/260 (87.69%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            MKDLGEAQY+LGIQIVRNRKN+TLAMSQ SYIDK+LSRYKMQNSK G LPFRHG+HLSK+
Sbjct: 1028 MKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKE 1087

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
            QCPKTPQEVEDMR IPY+SAVGSLMY +L TR DICY++GIVSRYQSNPG DHWT VK I
Sbjct: 1088 QCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNI 1147

Query: 121  LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
            LKYLRRTRNY LVYG+ DL LTGYTDSDFQ+DKD+RKSTSG              +KQ C
Sbjct: 1148 LKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTC 1207

Query: 181  IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
            IADSTMEAEYVAACEAAKE VWLRKF+TDLEVVPNM+L I L+CDNSGAVANS+EPRSHK
Sbjct: 1208 IADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHK 1267

Query: 241  RGKHMERKYHLIREIVHRMD 247
            RGKH+ERKYHLIREIVHR D
Sbjct: 1268 RGKHIERKYHLIREIVHRGD 1287

[Close]

BLAST of Tan0007534 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.5 bits (1090), Expect = 6.5e-115
Identity = 212/260 (81.54%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
           MKDLGEAQYVLGIQI+R+RKN+TLA+SQ +YIDK+L RY MQNSK GLLPFRHGVHLSK+
Sbjct: 97  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 156

Query: 61  QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
           Q PKTPQEVEDMR IPYASAVGSLMY +L TR DICYA+GIVSRYQSNPGLDHWTTVK I
Sbjct: 157 QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKII 216

Query: 121 LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
           LKYLRRTR+Y LVYG+ DL LTGYTDSDFQTDKDSRKSTSG              IKQGC
Sbjct: 217 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGC 276

Query: 181 IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
           IADSTMEAEYVAACEAAKE VWLRKF+ DLEVVPNMNL I L+CDNSGAVANS+EPRSHK
Sbjct: 277 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 336

Query: 241 RGKHMERKYHLIREIVHRMD 247
           RGKH+ERKYHLIREIV R D
Sbjct: 337 RGKHIERKYHLIREIVQRGD 356

[Close]

BLAST of Tan0007534 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.1 bits (1089), Expect = 8.5e-115
Identity = 212/260 (81.54%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
           MKDLGEAQYVLGIQI+R+RKN+TLA+SQ +YIDK+L RY MQNSK GLLPFRHGVHLSK+
Sbjct: 1   MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 60

Query: 61  QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
           Q PKTPQEVEDMR IPYASAVGSLMYV+L TR DICYA+GIVSRYQSNPGLDHWT VK I
Sbjct: 61  QSPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKII 120

Query: 121 LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
           LKYLRRTR+Y LVYG+ DL LTGYTDSDFQTDKDSRKSTSG              IKQGC
Sbjct: 121 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 180

Query: 181 IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
           IADSTMEAEYVAACEAAKE VWLRKF+ DLEVVPNMNL I L+CDNSGAVANS+EPRSHK
Sbjct: 181 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 240

Query: 241 RGKHMERKYHLIREIVHRMD 247
           RGKH+ERKYHLIREIV R D
Sbjct: 241 RGKHIERKYHLIREIVQRGD 260

[Close]

BLAST of Tan0007534 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 422.2 bits (1084), Expect = 3.2e-114
Identity = 210/260 (80.77%), Postives = 226/260 (86.92%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            MKDLGEAQYVLGIQI+R+RKN+TLA+SQ +YIDK+L RY MQNSK GLLPFRHGVHLSK+
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
            Q PKTPQEVEDMR IPYASAVGSLMY +L TR DICYA+GIVSRYQSNPGLDHWT VK +
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 1055

Query: 121  LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
            LKYLRRTR+Y LVYG+ DL LTGYTDSDFQTDKDSRKSTSG              IKQGC
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 1115

Query: 181  IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
            IADSTMEAEYVAACEAAKE VWLRKF+ DLEVVPNMNL I L+CDNSGAVANS+EPRSHK
Sbjct: 1116 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1175

Query: 241  RGKHMERKYHLIREIVHRMD 247
            RGKH+ERKYHLIREIV R D
Sbjct: 1176 RGKHIERKYHLIREIVQRGD 1195

[Close]

BLAST of Tan0007534 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 422.2 bits (1084), Expect = 3.2e-114
Identity = 210/260 (80.77%), Postives = 226/260 (86.92%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            MKDLGEAQYVLGIQI+R+RKN+TLA+SQ +YIDK+L RY MQNSK GLLPFRHGVHLSK+
Sbjct: 810  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
            Q PKTPQEVEDMR IPYASAVGSLMY +L TR DICYA+GIVSRYQSNPGLDHWT VK +
Sbjct: 870  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 929

Query: 121  LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
            LKYLRRTR+Y LVYG+ DL LTGYTDSDFQTDKDSRKSTSG              IKQGC
Sbjct: 930  LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 989

Query: 181  IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
            IADSTMEAEYVAACEAAKE VWLRKF+ DLEVVPNMNL I L+CDNSGAVANS+EPRSHK
Sbjct: 990  IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1049

Query: 241  RGKHMERKYHLIREIVHRMD 247
            RGKH+ERKYHLIREIV R D
Sbjct: 1050 RGKHIERKYHLIREIVQRGD 1069

[Close]

BLAST of Tan0007534 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.9e-116
Identity = 210/260 (80.77%), Postives = 228/260 (87.69%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            MKDLGEAQY+LGIQIVRNRKN+TLAMSQ SYIDK+LSRYKMQNSK G LPFRHG+HLSK+
Sbjct: 1028 MKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKE 1087

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
            QCPKTPQEVEDMR IPY+SAVGSLMY +L TR DICY++GIVSRYQSNPG DHWT VK I
Sbjct: 1088 QCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNI 1147

Query: 121  LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
            LKYLRRTRNY LVYG+ DL LTGYTDSDFQ+DKD+RKSTSG              +KQ C
Sbjct: 1148 LKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTC 1207

Query: 181  IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
            IADSTMEAEYVAACEAAKE VWLRKF+TDLEVVPNM+L I L+CDNSGAVANS+EPRSHK
Sbjct: 1208 IADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHK 1267

Query: 241  RGKHMERKYHLIREIVHRMD 247
            RGKH+ERKYHLIREIVHR D
Sbjct: 1268 RGKHIERKYHLIREIVHRGD 1287

[Close]

BLAST of Tan0007534 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.2e-115
Identity = 212/260 (81.54%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
           MKDLGEAQYVLGIQI+R+RKN+TLA+SQ +YIDK+L RY MQNSK GLLPFRHGVHLSK+
Sbjct: 97  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 156

Query: 61  QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
           Q PKTPQEVEDMR IPYASAVGSLMY +L TR DICYA+GIVSRYQSNPGLDHWTTVK I
Sbjct: 157 QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKII 216

Query: 121 LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
           LKYLRRTR+Y LVYG+ DL LTGYTDSDFQTDKDSRKSTSG              IKQGC
Sbjct: 217 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGC 276

Query: 181 IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
           IADSTMEAEYVAACEAAKE VWLRKF+ DLEVVPNMNL I L+CDNSGAVANS+EPRSHK
Sbjct: 277 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 336

Query: 241 RGKHMERKYHLIREIVHRMD 247
           RGKH+ERKYHLIREIV R D
Sbjct: 337 RGKHIERKYHLIREIVQRGD 356

[Close]

BLAST of Tan0007534 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 4.1e-115
Identity = 212/260 (81.54%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
           MKDLGEAQYVLGIQI+R+RKN+TLA+SQ +YIDK+L RY MQNSK GLLPFRHGVHLSK+
Sbjct: 1   MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 60

Query: 61  QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
           Q PKTPQEVEDMR IPYASAVGSLMYV+L TR DICYA+GIVSRYQSNPGLDHWT VK I
Sbjct: 61  QSPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKII 120

Query: 121 LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
           LKYLRRTR+Y LVYG+ DL LTGYTDSDFQTDKDSRKSTSG              IKQGC
Sbjct: 121 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 180

Query: 181 IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
           IADSTMEAEYVAACEAAKE VWLRKF+ DLEVVPNMNL I L+CDNSGAVANS+EPRSHK
Sbjct: 181 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 240

Query: 241 RGKHMERKYHLIREIVHRMD 247
           RGKH+ERKYHLIREIV R D
Sbjct: 241 RGKHIERKYHLIREIVQRGD 260

[Close]

BLAST of Tan0007534 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.6e-114
Identity = 210/260 (80.77%), Postives = 226/260 (86.92%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            MKDLGEAQYVLGIQI+R+RKN+TLA+SQ +YIDK+L RY MQNSK GLLPFRHGVHLSK+
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
            Q PKTPQEVEDMR IPYASAVGSLMY +L TR DICYA+GIVSRYQSNPGLDHWT VK +
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 1055

Query: 121  LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
            LKYLRRTR+Y LVYG+ DL LTGYTDSDFQTDKDSRKSTSG              IKQGC
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 1115

Query: 181  IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
            IADSTMEAEYVAACEAAKE VWLRKF+ DLEVVPNMNL I L+CDNSGAVANS+EPRSHK
Sbjct: 1116 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1175

Query: 241  RGKHMERKYHLIREIVHRMD 247
            RGKH+ERKYHLIREIV R D
Sbjct: 1176 RGKHIERKYHLIREIVQRGD 1195

[Close]

BLAST of Tan0007534 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.6e-114
Identity = 210/260 (80.77%), Postives = 226/260 (86.92%), Query Frame = 0


Query: 1    MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
            MKDLGEAQYVLGIQI+R+RKN+TLA+SQ +YIDK+L RY MQNSK GLLPFRHGVHLSK+
Sbjct: 810  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

Query: 61   QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
            Q PKTPQEVEDMR IPYASAVGSLMY +L TR DICYA+GIVSRYQSNPGLDHWT VK +
Sbjct: 870  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 929

Query: 121  LKYLRRTRNYSLVYGSGDLFLTGYTDSDFQTDKDSRKSTSG--------------IKQGC 180
            LKYLRRTR+Y LVYG+ DL LTGYTDSDFQTDKDSRKSTSG              IKQGC
Sbjct: 930  LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 989

Query: 181  IADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSHK 240
            IADSTMEAEYVAACEAAKE VWLRKF+ DLEVVPNMNL I L+CDNSGAVANS+EPRSHK
Sbjct: 990  IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1049

Query: 241  RGKHMERKYHLIREIVHRMD 247
            RGKH+ERKYHLIREIV R D
Sbjct: 1050 RGKHIERKYHLIREIVQRGD 1069

[Close]

BLAST of Tan0007534 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-22
Identity = 77/255 (30.20%), Postives = 125/255 (49.02%), Query Frame = 0


Query: 1   MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSKNGLLPFRHGVHLSKD 60
           ++DLG  +Y LG++I R+     + + Q  Y   +L    +   K   +P    V  S  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLGCKPSSVPMDPSVTFS-- 369

Query: 61  QCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVKAI 120
               +  +  D +   Y   +G LMY L  TR DI +A+  +S++   P L H   V  I
Sbjct: 370 --AHSGGDFVDAKA--YRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKI 429

Query: 121 LKYLRRTRNYSLVYGS-GDLFLTGYTDSDFQTDKDSRKSTSGI--------------KQG 180
           L Y++ T    L Y S  ++ L  ++D+ FQ+ KD+R+ST+G               KQ 
Sbjct: 430 LHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQ 489

Query: 181 CIADSTMEAEYVAACEAAKEVVWLRKFITDLEVVPNMNLSIALFCDNSGAVANSREPRSH 240
            ++ S+ EAEY A   A  E++WL +F  +L++   ++    LFCDN+ A+  +     H
Sbjct: 490 VVSKSSAEAEYRALSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFH 549

[Close]

BLAST of Tan0007534 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-14
Identity = 64/205 (31.22%), Postives = 100/205 (48.78%), Query Frame = 0


Query: 1   MKDLGEAQYVLGIQIVRNRKNRTLAMSQTSYIDKILSRYKMQNSK--NGLLPFRHGVHLS 60
           MKDLG   Y LGIQI  +     L +SQT Y ++IL+   M + K  +  LP +    +S
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSG--LFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVS 92

Query: 61  KDQCPKTPQEVEDMRCIPYASAVGSLMYVLLYTRSDICYAIGIVSRYQSNPGLDHWTTVK 120
             + P    +  D R     S VG+L Y+ L TR DI YA+ IV +    P L  +  +K
Sbjct: 93  TAKYP----DPSDFR-----SIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLK 152

Query: 121 AILKYLRRTRNYSL-VYGSGDLFLTGYTDSDFQTDKDSRKSTSGI--------------K 180
            +L+Y++ T  + L ++ +  L +  + DSD+     +R+ST+G               +
Sbjct: 153 RVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKR 212

Query: 181 QGCIADSTMEAEYVAACEAAKEVVW 189
           Q  ++ S+ E EY A    A E+ W
Sbjct: 213 QPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Tan0007534 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-54	43.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.9e-31	31.94	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.7e-23	30.74	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.3e-22	32.30	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	1.3e-20	39.85	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Tan0007534 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.0e-115	80.77	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0061170.1	6.5e-115	81.54	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	8.5e-115	81.54	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	3.2e-114	80.77	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	3.2e-114	80.77	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0007534 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	4.9e-116	80.77	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7V1F5	3.2e-115	81.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
A0A5A7TKM4	4.1e-115	81.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7TZD0	1.6e-114	80.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	1.6e-114	80.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Tan0007534 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.8e-22	30.20	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.4e-14	31.22	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 163..241
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 163..241
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 142..242 e-value: 2.44213E-40 score: 134.133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007534.1	Tan0007534.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding