Tan0007460 (gene) Snake gourd v1

Overview


Name	Tan0007460
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DBD_Tnp_Mut domain-containing protein
Location	LG07: 56930360 .. 56931145 (+)
RNA-Seq Expression	Tan0007460
Synteny	Tan0007460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTGGTCCCCATAGTTTAAAAGCTATTTCTGCAAATTCTATTTGGTGCATATCTTATCTATACAAAAATATTCTTTTAGTGTATACACACATATATATTTCTACTGTTTGTGGACCCATTTGTGAAGTGTTTGATATGCTAATTTGTTTTTAAGTATATGATTTATAGCTTGTGGTCCCCATAATTTACTATTCTTGGTTGAGTATGATTTATAAGTCTTCTGTATGTTTATTATCTCATCTCATTGTGTTCTAAACTTTAAAGCCTCCCATTTGACAAGAAAAAGAAAGTATGTAATATGTTTTAGTGTATTGGTTAATTATTATTTGTAATGTATGTTGAAAACTTTTTTCTTTAATTATATTTGTTTTCATGAATTATGTTAGTCCAATTATGTTTTCTTAAAAAATTAACTCATTAATTGTTTATTTATTTATTTTGTAGATGTCTACTTTTGTTGTTGAGGTTCATCATGGTGGTCAATTTGTCTATATGCCTAACATGAGATACATAAAAGAAAAAGTTAAAAGATTTGTTGATTATGATCCAGATTTATGGTCTTTGATAGAAGTGAAAGATATAATTCAAAAGCTAGGTTATGTAGAGGAAATGAAACTGTGGGGAAGAGATTGCAGAAACAATGTGGGTGGTTTTAGACTTCTAGAAAATGATGGAGATGTTGTTGAATTGGCTAGCTTCTTGAGTGATGGAATGAATTTTGAAGTATATGTGGAACTCATCGATGGCAATTATGATGATGATTATGAGGAAGATAATTGA

mRNA sequence

ATGGCTTGTGGTCCCCATAGTTTAAAAGCTATTTCTGCAAATTCTATTTGGTGCATATCTTATCTATACAAAAATATTCTTTTAGTGTATACACACATATATATTTCTACTATGTCTACTTTTGTTGTTGAGGTTCATCATGGTGGTCAATTTGTCTATATGCCTAACATGAGATACATAAAAGAAAAAGTTAAAAGATTTGTTGATTATGATCCAGATTTATGGTCTTTGATAGAAGTGAAAGATATAATTCAAAAGCTAGGTTATGTAGAGGAAATGAAACTGTGGGGAAGAGATTGCAGAAACAATGTGGGTGGTTTTAGACTTCTAGAAAATGATGGAGATGTTGTTGAATTGGCTAGCTTCTTGAGTGATGGAATGAATTTTGAAGTATATGTGGAACTCATCGATGGCAATTATGATGATGATTATGAGGAAGATAATTGA

Coding sequence (CDS)

ATGGCTTGTGGTCCCCATAGTTTAAAAGCTATTTCTGCAAATTCTATTTGGTGCATATCTTATCTATACAAAAATATTCTTTTAGTGTATACACACATATATATTTCTACTATGTCTACTTTTGTTGTTGAGGTTCATCATGGTGGTCAATTTGTCTATATGCCTAACATGAGATACATAAAAGAAAAAGTTAAAAGATTTGTTGATTATGATCCAGATTTATGGTCTTTGATAGAAGTGAAAGATATAATTCAAAAGCTAGGTTATGTAGAGGAAATGAAACTGTGGGGAAGAGATTGCAGAAACAATGTGGGTGGTTTTAGACTTCTAGAAAATGATGGAGATGTTGTTGAATTGGCTAGCTTCTTGAGTGATGGAATGAATTTTGAAGTATATGTGGAACTCATCGATGGCAATTATGATGATGATTATGAGGAAGATAATTGA

Protein sequence

MACGPHSLKAISANSIWCISYLYKNILLVYTHIYISTMSTFVVEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWGRDCRNNVGGFRLLENDGDVVELASFLSDGMNFEVYVELIDGNYDDDYEEDN

Homology

[Close]

BLAST of Tan0007460 vs. NCBI nr
Match: XP_022153708.1 (uncharacterized protein LOC111021158 [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 7.4e-26
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 38  MSTFVVEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWG 97
           M+TFVVEVHH G F++ P ++YI  KV R+ ++DPD WS  EV  ++++LGY   +KLWG
Sbjct: 1   MTTFVVEVHHTGYFIHEPYIKYISGKVDRYTNFDPDYWSFFEVIGVVEQLGYYSYLKLWG 60

Query: 98  RDCRNNVGGFRLLENDGDVVELASFLSDGMNFEVYVE 135
           RD    VGG+RL+E+D DV+ELAS LSDGM FE+YVE
Sbjct: 61  RDPTKEVGGYRLIESDKDVMELASLLSDGMKFEIYVE 97

[Close]

BLAST of Tan0007460 vs. NCBI nr
Match: KAG5541483.1 (hypothetical protein RHGRI_021341 [Rhododendron griersonianum])

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-10
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 41  FVVEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWGR-- 100
           F VE+HHGG FV  P  RY++  V    D D D WS +E+++II  LGY +   +W R  
Sbjct: 9   FTVEIHHGGLFVENPT-RYVRGVVNHVNDLDSDKWSKLEMEEIIVNLGYTQWKNIWYRVP 68

Query: 101 DCRNNVGGFRLLENDGDVVELASFLSDGMNFEVYVE 135
                 GG R++  D D +++AS+  +  N EVYVE
Sbjct: 69  GMEMGGGGLRVMFRDSDAMDMASYAKNIGNIEVYVE 103

[Close]

BLAST of Tan0007460 vs. NCBI nr
Match: KAF7138490.1 (hypothetical protein RHSIM_Rhsim07G0255600 [Rhododendron simsii])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-09
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 40  TFVVEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWGRD 99
           +F VEVHH GQFV  P +RY++  V    D DPDL S +EV+DI+++LGY +   LW R 
Sbjct: 4   SFTVEVHHLGQFVENP-VRYVEGVVNHVDDCDPDLRSKLEVEDIVERLGYPKYKMLWYRI 63

Query: 100 CRNNV-GGFRLLENDGDVVELASFLSDGMNFEVYVELIDGNYD 142
            R  +  G R++E D D + + + +      E+YVE I    D
Sbjct: 64  PRLGLEEGLRVIETDKDAMHMVAVVKGHEQIEIYVEHIIDELD 105

[Close]

BLAST of Tan0007460 vs. NCBI nr
Match: KAF7126704.1 (hypothetical protein RHSIM_Rhsim11G0188900 [Rhododendron simsii])

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-09
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 43  VEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWGR--DC 102
           VE+HHGG FV  P  RY++  V    D D D WS +E+++I+  LGY +   +W R    
Sbjct: 26  VEIHHGGLFVENPT-RYVRGVVNHVNDLDSDKWSKLEMEEIVVNLGYTQWKNIWYRVPGM 85

Query: 103 RNNVGGFRLLENDGDVVELASFLSDGMNFEVYVE 135
               GG R++  D D +++AS+  +  N EVYVE
Sbjct: 86  EMAGGGLRVMFRDTDAMDMASYAKNTGNIEVYVE 118

[Close]

BLAST of Tan0007460 vs. NCBI nr
Match: KAE9463252.1 (hypothetical protein C3L33_04837, partial [Rhododendron williamsianum])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 43  VEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWGRDCRN 102
           VEVHH G+FV  P +RY++  V    D DPDLWS +EV+DI+++LGY     LW R    
Sbjct: 26  VEVHHLGRFVENP-VRYVEGVVNHVDDCDPDLWSKLEVEDIVERLGYPNYKMLWYRIPGL 85

Query: 103 NV-GGFRLLENDGDVVELASFLSDGMNFEVYVE 135
            +  G R++  D D + +   +      E++VE
Sbjct: 86  GLEEGLRVIGTDKDAMHMVEVVKGHEQIEIFVE 117

[Close]

BLAST of Tan0007460 vs. ExPASy TrEMBL
Match: A0A6J1DI69 (uncharacterized protein LOC111021158 OS=Momordica charantia OX=3673 GN=LOC111021158 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 38  MSTFVVEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWG 97
           M+TFVVEVHH G F++ P ++YI  KV R+ ++DPD WS  EV  ++++LGY   +KLWG
Sbjct: 1   MTTFVVEVHHTGYFIHEPYIKYISGKVDRYTNFDPDYWSFFEVIGVVEQLGYYSYLKLWG 60

Query: 98  RDCRNNVGGFRLLENDGDVVELASFLSDGMNFEVYVE 135
           RD    VGG+RL+E+D DV+ELAS LSDGM FE+YVE
Sbjct: 61  RDPTKEVGGYRLIESDKDVMELASLLSDGMKFEIYVE 97

[Close]

BLAST of Tan0007460 vs. ExPASy TrEMBL
Match: A0A6A4M1H5 (DBD_Tnp_Mut domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_04837 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.5e-08
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 43  VEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWGRDCRN 102
           VEVHH G+FV  P +RY++  V    D DPDLWS +EV+DI+++LGY     LW R    
Sbjct: 26  VEVHHLGRFVENP-VRYVEGVVNHVDDCDPDLWSKLEVEDIVERLGYPNYKMLWYRIPGL 85

Query: 103 NV-GGFRLLENDGDVVELASFLSDGMNFEVYVE 135
            +  G R++  D D + +   +      E++VE
Sbjct: 86  GLEEGLRVIGTDKDAMHMVEVVKGHEQIEIFVE 117

[Close]

BLAST of Tan0007460 vs. ExPASy TrEMBL
Match: A0A2U1KN51 (Transposase, MuDR OS=Artemisia annua OX=35608 GN=CTI12_AA583620 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.3e-07
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 34  YISTMSTFVVEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEM 93
           Y  + + F +E+HHGG F      RY+  KV  +   D DL+S+IE+KD+  KLGY EE 
Sbjct: 22  YGKSTTRFTLELHHGGFFTMGSGRRYMNGKVSWYDGVDIDLFSVIELKDMFGKLGYKEED 81

Query: 94  KLWGR---DCRNNVGGFRLLENDGDVVELASFLSDGMNFEVYVEL 136
            ++       R+   G   L  D D++ LA ++      EVY+EL
Sbjct: 82  TMYFHFRIPNRDLDSGLMPLACDSDILRLAKYVGKCKVIEVYLEL 126

[Close]

BLAST of Tan0007460 vs. ExPASy TrEMBL
Match: A0A6A4LGM1 (DBD_Tnp_Mut domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_13702 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = 0


Query: 41  FVVEVHHGGQFVYMPNMRYIKEKVKRFVDYDPDLWSLIEVKDIIQKLGYVEEMKLWGR-- 100
           F VE+HHGG FV  P  RY++  V    D D D WS +E+++I+  LGY +   +W R  
Sbjct: 5   FTVEIHHGGLFVENPT-RYVRGVVNHVNDLDSDKWSKLEMEEIVVNLGYTQWKNIWYRVP 64

Query: 101 DCRNNVGGFRLLENDGDVVELASF-------LSDGMNFE-VYVELIDG-----NYDDDYE 149
                 GG R++  D D +++AS+       +SD  N + VY  + D      + D   E
Sbjct: 65  GMEMGGGGLRVMFRDSDAMDMASYAKNTGTCISDSDNGDGVYYSISDNDDSVVDVDVPIE 124

[Close]

BLAST of Tan0007460 vs. ExPASy TrEMBL
Match: A0A2U1KB97 (Subtilisin-like protease OS=Artemisia annua OX=35608 GN=CTI12_AA621110 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 34  YISTMSTFVVEVHHGGQFVYMPNMRYIKEKVKRFVDY-DPDLWSLIEVKDIIQKLGYVEE 93
           Y    + F +++HHGG F   P  +YI +    F+D+ D DL+S+IE+ D+I+KLGY  +
Sbjct: 21  YSKFSNMFSLKIHHGGYFTESPGRKYI-QGTHNFIDFIDMDLFSVIEINDMIEKLGYKRK 80

Query: 94  ---MKLWGRDCRNNVG-GFRLLENDGDVVELASFL 124
              M    +   N++  G + L NDGDV+ L SFL
Sbjct: 81  DCVMYYHFKIPNNDLDYGLQALGNDGDVLNLVSFL 114

The following BLAST results are available for this feature:

BLAST of Tan0007460 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153708.1	7.4e-26	57.73	uncharacterized protein LOC111021158 [Momordica charantia]	[more]
KAG5541483.1	5.7e-10	40.63	hypothetical protein RHGRI_021341 [Rhododendron griersonianum]	[more]
KAF7138490.1	2.2e-09	40.78	hypothetical protein RHSIM_Rhsim07G0255600 [Rhododendron simsii]	[more]
KAF7126704.1	4.8e-09	39.36	hypothetical protein RHSIM_Rhsim11G0188900 [Rhododendron simsii]	[more]
KAE9463252.1	1.5e-07	38.71	hypothetical protein C3L33_04837, partial [Rhododendron williamsianum]	[more]

BLAST of Tan0007460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DI69	3.6e-26	57.73	uncharacterized protein LOC111021158 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6A4M1H5	7.5e-08	38.71	DBD_Tnp_Mut domain-containing protein (Fragment) OS=Rhododendron williamsianum O...	[more]
A0A2U1KN51	8.3e-07	36.19	Transposase, MuDR OS=Artemisia annua OX=35608 GN=CTI12_AA583620 PE=4 SV=1	[more]
A0A6A4LGM1	1.1e-06	34.15	DBD_Tnp_Mut domain-containing protein (Fragment) OS=Rhododendron williamsianum O...	[more]
A0A2U1KB97	1.8e-06	38.95	Subtilisin-like protease OS=Artemisia annua OX=35608 GN=CTI12_AA621110 PE=4 SV=1	[more]

BLAST of Tan0007460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007460.1	Tan0007460.1	mRNA