Tan0007397 (gene) Snake gourd v1

Overview


Name	Tan0007397
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	serine/arginine-rich splicing factor SR34A
Location	LG07: 9013581 .. 9018799 (+)
RNA-Seq Expression	Tan0007397
Synteny	Tan0007397

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCTTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTTTACAAGGTATATGTTTTTAATCTTAGCTATTTCTTATCATGGTGTCTATGTTCGAATTGTTATTTTCTCTTTTCATATTATAAAATTTGAATACTATTCTTTCTCAATTATTTTCAGTTTCGTAGGGAGAGGTACATTACAATAGTGATTTACAGTCATTCAATTCTATTTTGATTTTTGGTTCTGAAAAGAAAATCTACTAGATGTATTTTGTGGCTCCTGCATATTGAAGTTTTAATTTCTGTGTACTTACGATTCTTCATGATTGATATTTCCTTCGGCAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGGTATTGCTTTTGATTTTTGGTTTTTATCTACTTTTAATTGCATTTGCAAAATTGTTTTTCATGATGTTATGTGCTTTCTGTTGTTAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTGAGGGTAAACTAAGTCTTCTTTTTCTTTATTTCCTGGTCCTGTTATTTTTGGTTTTTTATATTTTTGGTTTTTTAATAGGTTGAGCTTGCACATGGGGGTAGAGGCCCTTCATCAAATGATCGTCGTAGCAGTTATGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGAGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGGGAATATATATGATGCTGCTATATATAAGGAAGCATGACACCAACAAAATTTCCCACGTATAATATTCCATTAGGTTCATATTAATTTCAATGTTCTAACGAATGTTTAATTTCCCTCGCAGTTATTGTACGTGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGTGTTAGAATCTTTTTATTGTTCAACCAAAGATTAAGGGTTTCTTTTATTGGATCATGTAAATGACTGTACTGGTATAATGCTTTCAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGTTTAATACTGCCTTTCACCCTGTAATAAGAATTGCTATTTTTTTAAGTTTGTGCAAAATGGTTTTCCTGTGTAGGAATGATTTCTTAAGCCAATGTTGCACATTTGTTTTGTTTTACAAAATTCAACTCTTGTAGAAATTTCTGATCATGTTCCTAGAGCAATTATAATGCACATGATATGGGTAAGAATGTAAGATGTGCATCATCCATAATTCTGACTGCAAATATTTAATTTATGCCTTAGTTCCTCTCCTGACCACCTAGGAAGCACAAACTTTTTGTTTTTACAAAGTGTCTGTGTCAGACATGTCTGGACATGCTCTGGACACATGTTTAACATGCGAAATTGTGTGCCTCCTTTATTATTTTTATTTTTTTAAATTTTGGATACGGGGTGGATGCGCCATTCAAAAACCCAAACCTTTTAAGTGGTCGGCAATGTTGAGGGATATCGAACAAAGGAATGGAAAGCAGAATTGGGGGGAGCGAGGCGTTGTTGGAAGAGGTGGTCGAAAGTGAAGTCCATCATTGGTAGAGAGAGGGAGATCAGACAGAGGAATGGAAAGCAGAATCGAGGGGAAGGAGAGCAGAATCGAAGAGGGAAAGTAGAAATTGGGGAAACAGTGGAGGGAAAGAGATTTAGGCTTATGGTTTTCGTTTAAATTACAAACTTTTAAATCAAATTTATTTTGTGGACTTTTAATGGGTAAGCATGTTGGGTCTTTGTCTTTATTGGGTTTAAGTGGGTTCATATGATTTGTTGGTTTTTATGTACATTAAATATTAAACTAAATTCAATGGCCAATTATATTTTCATTCACATTTTTTTTTTAATTTTAATTAATTTTAATGGTTAGTAAAAAAAAGGTATTTTGGGTCTGTTTTAATATTATCTAATAAAAAATAATAATGTACCCCTATCTGTGTCCTACATTATTTTAGAAATTGGTGTGTCACCGTTTCCGTGCTTCTTAGTCGATTACAGAGCATAATGTGATGGATGGGTCTTTGTAGTTGGTGTAGCTTAAAGGACAAAGGAGAATTATCTCCTAGAAGTCTATCAAATAATCTTTATTATGAATACAAGAGGGAAATTCTCTACTTATAGAGAATTGAAAGGAAAATAAACTAATCCTAATCTTAATTAACCAAGGGATTAACCAAACAAACTAGTCCTAATTAACCAAGATTAGTATCTAATTAACCATTAATCCTACTACGTCCGTAGTTGTATTTTATCTCTGTAAAGTGATTACTTTCTATTTAAGGTCTATGCATTAAGCTTATGAAAATTGGATATACCTCTGTTAGAGGAATGCAAGTCAAGGTGTAGGTTTGACGCCCCAATCAATCTTGCTAAGTCTTATCTTTTGGGTAACAAGACACATGGATGGATGAAATTTTCTCTAAAGTTCCCCATGGTTGAAAACCTTGATGGATTTGTTTTGGATCTCATGGGAATTGGGGGTTATGAGCTGGTTATTTTCGAGAGCCAACTTTTTCTCGTTGGCACACAATATGATATGCGGATTGGGTAAATCATGTGGTGCTGGGTCTAGCTATTTTGGGGAGAAAAGGTCTTAGGATAACTTTATATTATTGATGTCTGATTCCCAGTTTTCATTCCATCATGAATTGTCATAACACATTATCCTGCAACTTTGGATCATCCTTATATTTTGTTGTATAATGGTATTTTGGTGTTAACAAGGTGATGTGCTGTGCCACTTTGATATTTGAAGAGGCAGTATTTTTAATTAGTTTATAATCTAGGGCTGTATTACGAATAACATTTATTGTTATAATGTTTAGTATGTGACATACCACAGAATGCAGCAGCAGATCATTTACACTGTAACTACTAGAAGTTGTCTATTTTTTTTTTTCATCTTTACAAGTTCCAACAAAGTTCAGAAACTGAAATTACTTAGACTTGATTTGATAATTAGATAAATATTTACTATTTGAAGTACACGTGTCCAGGAACTTTTGGGATTGTTGATTATACTAACTATGACGACATGAAATATGCTGTAAGTTTTTCTAGAAGCACACACGTTTAATCAGAACTGCATTATTTCAATTTGACAACTAATGTATATCTGTTTTTTAGATTCGAAAACTCGATGATACTGAATTCAGAAATCCTTGGGCAAGAGCATACATTCGGGTACCTTAACCTTTATTCACTTGCCATGTTAGTATTTTGATTTAGCCTACTGTTGTGGCGTTTTTCATGAATAACCTACCCTCTTTCAGTGAGCATTTTAAGAAACTGGGTTTTGTTTTTTTATGTCACTTGTCTGTGGATGACATTTGGTTGCAGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGTCGGAGCAGGAGCAGGAGCAGGAGCCGTAGTAGAAGCCGGAGCCGGAGCAGGAGCCGAAGCCGGAGCCGGAGCCGGAGTGCTAGACGAAATAGGAGGTACCAGCTTTTTCTGTTTTACTGTTATCTCTTCCATGGCCTCATATTATGCGTTGTAATATTTTCTCATGTTTTCTCGTGCCATGCAGCAAATCAGCAGAACGATCTGTCTCTAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTGAAATCTTCAAGGTACCTGTGGCCTGTGTCTGTGTGTGTGTGTTTTCCCCTAAGTTTGGATTTGCTTAAGAAATAATGTTTGACAAACTTCTTTTCTCCAAAATATGCAGGCCACGGTCAAAATCAAAATCTGGATCACCACGTGAGGTATGCAACTTCCAGTTTTAATGCTTCAAAAACTGGTGACTTCATATTAATCCATTTATGCTCATGGTATATAAAGCTCTCTGATTGGATGATCTGCGTATGGTATTAAAAAAGAAACACCTTTGGTTGAAGGTGTAGAATGAGCGTGTTTGTTTTGTGGGTGGAGGGAATGGGCACGATGATATTATATCTTCTTGTCATTGTTAGTTTTGTTATTGGCGGCATGGGTAGTTGCCAATGGGAATGATAGAAGCCATGATGGTTTTTCATTCTGAATGAATCTCAAGATTAGCTTGATACTATTAACCATGGGTTGATTCTTTAGTTCGAGCTATGACGGTTCTAGATAACTAAGAGGCTGTTTGGAGCGCTGGGTGAGTTATAATAACATAAGTTATAATAGTCTGTGAGTTATTATACTCTGTGGAATCATATAATATAATTTAAAATACAGAGTTGTTTAGTCCAAAGTTATAATAGTTTGTGTTTGTAGTGTAGAGTATTCTGTCCCAAACAGGCTCTCAAAGTAAATGTGATAATGTCACGGTTAACGGATAGTTTGAATTTAGTTAAGAGTAATGGAAATACGATGTACATATTTTTGGTTCATTTTGCTGTGTAATGAGAGCAGCTCTCGTCTCATTTCTGATTTTGAAACCATATCTTAACTGAACTTGAAGAATATCTGATTAGCTTTTTATTAAAGAATAGGAATCATGATGAAAATAGGAACTAAATTGGCACGATGACTATTAAATTATAATCAGCTCAAGCACAACTCAATTAAAAATATCATAACTTCGATGAAAAGGTTAGAGGTTCAAATTCCTATCCCACATGTTGAACCATAAAAAGAGAATTATAGAAGTATAGAGGCTTAGTAAAATTTGTCTTCGTATTAAATTAAAACTATGATTTGACTGGTGCCATATAACACTAACAGAAGCGGAAATCTCTTTTTCAGGCGCGAGAACGCAGCGAATGATGCAGAACTATGATGATATTGATATGAATGGTTATAATATTCAGGATGCAACAATCAGTTGGATTTCATTTTAGTTTAGGACCTATGCAGACTGGTTATGAGGAGTTGAGTTAGCTGAAAAATTGCATTAGTTGTGTTGTATGGATATCTTTTAAACCCTTCTCACATATCGACCTACCATCATTTTGTTTGGAGACATTTTTAGGTATTTGCATGTCTTAAGAGTTACTTGCACACTGCTTTTGGAATTTGGAACCAAGATTTTTAAATCTTCTGATTAGAAATTTGAGAAATGATGATGATGATTGTTATTATTTTATCTTGTTTGGAACAAGAAA

mRNA sequence

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCTTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTTTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTGAGGGTTGAGCTTGCACATGGGGGTAGAGGCCCTTCATCAAATGATCGTCGTAGCAGTTATGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGAGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGAACTTTTGGGATTGTTGATTATACTAACTATGACGACATGAAATATGCTATTCGAAAACTCGATGATACTGAATTCAGAAATCCTTGGGCAAGAGCATACATTCGGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGTCGGAGCAGGAGCAGGAGCAGGAGCCGTAGTAGAAGCCGGAGCCGGAGCAGGAGCCGAAGCCGGAGCCGGAGCCGGAGTGCTAGACGAAATAGGAGCAAATCAGCAGAACGATCTGTCTCTAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTGAAATCTTCAAGGCCACGGTCAAAATCAAAATCTGGATCACCACGTGAGGCGCGAGAACGCAGCGAATGATGCAGAACTATGATGATATTGATATGAATGGTTATAATATTCAGGATGCAACAATCAGTTGGATTTCATTTTAGTTTAGGACCTATGCAGACTGGTTATGAGGAGTTGAGTTAGCTGAAAAATTGCATTAGTTGTGTTGTATGGATATCTTTTAAACCCTTCTCACATATCGACCTACCATCATTTTGTTTGGAGACATTTTTAGGTATTTGCATGTCTTAAGAGTTACTTGCACACTGCTTTTGGAATTTGGAACCAAGATTTTTAAATCTTCTGATTAGAAATTTGAGAAATGATGATGATGATTGTTATTATTTTATCTTGTTTGGAACAAGAAA

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCTTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTTTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTGAGGGTTGAGCTTGCACATGGGGGTAGAGGCCCTTCATCAAATGATCGTCGTAGCAGTTATGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGAGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGAACTTTTGGGATTGTTGATTATACTAACTATGACGACATGAAATATGCTATTCGAAAACTCGATGATACTGAATTCAGAAATCCTTGGGCAAGAGCATACATTCGGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGTCGGAGCAGGAGCAGGAGCAGGAGCCGTAGTAGAAGCCGGAGCCGGAGCAGGAGCCGAAGCCGGAGCCGGAGCCGGAGTGCTAGACGAAATAGGAGCAAATCAGCAGAACGATCTGTCTCTAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTGAAATCTTCAAGGCCACGGTCAAAATCAAAATCTGGATCACCACGTGAGGCGCGAGAACGCAGCGAATGA

Protein sequence

MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERSE

Homology

[Close]

BLAST of Tan0007397 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.7e-104
Identity = 221/292 (75.68%), Postives = 247/292 (84.59%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AI+ RDGYN DGCRLRVELAHGGRG SS+DRR  Y     GGGG G GGGGGGGG  RFG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGY-----GGGGSGYGGGGGGGGSARFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA
Sbjct: 121 VSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR--------SRSRSRS 240
           IRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSR        SRSRS S
Sbjct: 181 IRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLS 240

Query: 241 RSRSARRNRSKSAERSVSRSVSRSRSPSP-VKSSRPRSKSKSGSPREARERS 284
           RS+S R++ SKS  RS+SRS+S+SRSPSP  K S PR+ S+S S   +R RS
Sbjct: 241 RSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRS 287

[Close]

BLAST of Tan0007397 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 8.8e-79
Identity = 184/288 (63.89%), Postives = 219/288 (76.04%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AI  RDGY+FDG RLRVELAHGGR  SS+D R S+        GGG GGG G G GG  G
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSF-------NGGGRGGGRGRGDGGSRG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
            S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKYA
Sbjct: 121 PSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRSRSRSR 240
           ++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSRSRSRSR
Sbjct: 181 LKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSR 240

Query: 241 SARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERS 284
           S R  ++KS+ RS ++S SRS          PRSKS+S SPR +R RS
Sbjct: 241 S-RSPKAKSSRRSPAKSTSRSPG--------PRSKSRSPSPRRSRSRS 271

[Close]

BLAST of Tan0007397 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.0e-74
Identity = 183/282 (64.89%), Postives = 211/282 (74.82%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRTIYVGNLP DIRE E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AI  RDGY+FDG  LRVELAHGGR  SS+D R SY G       G GG GGG GGG   G
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGR------GRGGRGGGDGGGRERG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
            S+RSEYRV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT GIVDYT+Y+DMKYA
Sbjct: 121 PSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRSRSRSR 240
              LDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSR RS SRSRSRSRSRS+
Sbjct: 181 ---LDDTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSK 240

Query: 241 SARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPR 278
           S R  ++KS  RS ++S SRS        SR RSKS+S SPR
Sbjct: 241 S-RSPKAKSLRRSPAKSTSRS------PRSRSRSKSRSLSPR 265

[Close]

BLAST of Tan0007397 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.1e-68
Identity = 172/288 (59.72%), Postives = 203/288 (70.49%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++RTIYVGNLP DIR+ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGR--GPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGR 120
           AI  RDGY+FDGCRLRVE+AHGGR   PS +   SSY  S                    
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR------------------- 120

Query: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMK 180
              S+RS+YRV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY+NYDDMK
Sbjct: 121 -APSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMK 180

Query: 181 YAIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRS-RSRSRSRSRS---RSRSRSR 240
           YAIRKLD TEFRN ++ AYIRV++Y+      SP  S+S RSRSRSR  S    S+SRS 
Sbjct: 181 YAIRKLDATEFRNAFSSAYIRVREYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSV 240

Query: 241 SRSRS---RSARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSG 275
           S +RS   RS   +RS+S   SVSRS SRS+S S  +S+ P S   SG
Sbjct: 241 SPARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVSPVISG 268

[Close]

BLAST of Tan0007397 vs. ExPASy Swiss-Prot
Match: Q6DII2 (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-57
Identity = 159/255 (62.35%), Postives = 184/255 (72.16%), Query Frame = 0


Query: 9   IYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGY 68
           IYVGNLP DIR  +IED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 69  NFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGG---GRFG-VSKR 128
           ++DG RLRVE    GRG          GG GGGGGGGGGGGGGGGGGG   GR+G  S+R
Sbjct: 78  DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137

Query: 129 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKL 188
           SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+V++   +DM YA+RKL
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 197

Query: 189 DDTEFR-NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSK 248
           D+T+FR +    AYIRV K DG  + S  RSRSRSRSRSRSRSRS SRSRS S RR+R  
Sbjct: 198 DNTKFRSHEGETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRG- 257

Query: 249 SAERSVSRSVSRSRS 259
           S   S   S SRSR+
Sbjct: 258 SPRYSPRHSRSRSRT 267

[Close]

BLAST of Tan0007397 vs. NCBI nr
Match: XP_038907230.1 (serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907232.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907233.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida])

HSP 1 Score: 470.7 bits (1210), Expect = 8.9e-129
Identity = 267/288 (92.71%), Postives = 272/288 (94.44%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AIRARDGYNFDGCRLRVELAHGGRGPSS+DRRSSY        GGGG GGGGG GGGRFG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY--------GGGGSGGGGGAGGGRFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA
Sbjct: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRS---- 240
           +RKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRS    
Sbjct: 181 MRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRP 240

Query: 241 ARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERSE 285
           ARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKS+SGSPR+ARE SE
Sbjct: 241 ARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREGSE 280

[Close]

BLAST of Tan0007397 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 466.5 bits (1199), Expect = 1.7e-127
Identity = 265/284 (93.31%), Postives = 272/284 (95.77%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AIRARDGYNFDGCRLRVELAHGGRGPSS+DRRSSYG  GGGGGGGGGGGGGGGGGGGRFG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYG--GGGGGGGGGGGGGGGGGGGRFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKYA
Sbjct: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARRN 240
           IRKLDDTEF+NPWARAYIRVKKYDGSPT      RSRSRSRSRSRSRSRS+SRSRSARRN
Sbjct: 181 IRKLDDTEFKNPWARAYIRVKKYDGSPT------RSRSRSRSRSRSRSRSQSRSRSARRN 240

Query: 241 RSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERSE 285
           RSKS ERSVSRSVSRSRSPSPVKSSRPRSKS+SGSPRE RE SE
Sbjct: 241 RSKSVERSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGREGSE 276

[Close]

BLAST of Tan0007397 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451.8 bits (1161), Expect = 4.3e-123
Identity = 255/283 (90.11%), Postives = 262/283 (92.58%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AIR RDGYNFDGCRLRVELAHGGRGPSS+D RS+YGGS         GGGGGGGGGGRFG
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS---------GGGGGGGGGGRFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA
Sbjct: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARRN 240
           IRKLDDTEF+NPWARAYIRVKKY+GSPT    R RSR+RSRSRSRSRSRSRSRSRSARRN
Sbjct: 181 IRKLDDTEFKNPWARAYIRVKKYEGSPT----RGRSRNRSRSRSRSRSRSRSRSRSARRN 240

Query: 241 RSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERS 284
           RSKSAE+SVSRSVSRSRS SPVKSSR RSKS+SGSPREARE S
Sbjct: 241 RSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 270

[Close]

BLAST of Tan0007397 vs. NCBI nr
Match: XP_022996414.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996416.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996417.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima])

HSP 1 Score: 448.0 bits (1151), Expect = 6.2e-122
Identity = 251/283 (88.69%), Postives = 259/283 (91.52%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AIR RDGYNFDGCRLRVELAHGGRGPSS+D RS+YGGS              GGGGGRFG
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS--------------GGGGGRFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA
Sbjct: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARRN 240
           IRKLDDTEF+NPWARAYIRVKKY+GSPT  R RSR+RSRSRSRSRSRSRSRSRSRSA+RN
Sbjct: 181 IRKLDDTEFKNPWARAYIRVKKYEGSPT--RGRSRNRSRSRSRSRSRSRSRSRSRSAKRN 240

Query: 241 RSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERS 284
           RSKSAE+SVSRSVSRSRS SPVKSSR RSKS+SGSPREARE S
Sbjct: 241 RSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 267

[Close]

BLAST of Tan0007397 vs. NCBI nr
Match: XP_023533513.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533515.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533516.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533517.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.0 bits (1146), Expect = 2.4e-121
Identity = 255/287 (88.85%), Postives = 262/287 (91.29%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYK----YGRILDIELKIPPRPPCYCFVEFENVR 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYK    YGRILDIELKIPPRPPCYCFVEFENVR
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR 60

Query: 61  DAEDAIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGG 120
           DAEDAIR RDGYNFDGCRLRVELAHGGRGPSS+D RS+YGGS         GGGGGGGGG
Sbjct: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS---------GGGGGGGGG 120

Query: 121 GRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDD 180
           GRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDD
Sbjct: 121 GRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDD 180

Query: 181 MKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRS 240
           MKYAIRKLDDTEF+NPWARAYIRVKKY+GSPT    R RSR+RSRSRSRSRSRSRSRSRS
Sbjct: 181 MKYAIRKLDDTEFKNPWARAYIRVKKYEGSPT----RGRSRNRSRSRSRSRSRSRSRSRS 240

Query: 241 ARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERS 284
           ARRNRSKSAE+SVSRSVSRSRS SPVKSSR RSKS+SGSPREARE S
Sbjct: 241 ARRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 274

[Close]

BLAST of Tan0007397 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 5.6e-129
Identity = 270/286 (94.41%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSY-GGSGGGGGGGGGGGGGGGGGGGRF 120
           AIRARDGYNFDGCRLRVELAHGGRGPSS+DRRSSY GG GGGGGGGGGGGGGGGGGGGRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARR 240
           AIRKLDDTEFRNPWARAYIRVKKYDGSPT    RSRSRSRSRSRSRSRSRSRSRSR+ARR
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPT----RSRSRSRSRSRSRSRSRSRSRSRTARR 240

Query: 241 NRSKSAE-RSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERSE 285
           NRSKSAE RSVSRSVSRSRSPSP+KSSRPRSKS+SGSPR+ARE SE
Sbjct: 241 NRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGSE 282

[Close]

BLAST of Tan0007397 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 8.1e-128
Identity = 265/284 (93.31%), Postives = 272/284 (95.77%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AIRARDGYNFDGCRLRVELAHGGRGPSS+DRRSSYG  GGGGGGGGGGGGGGGGGGGRFG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYG--GGGGGGGGGGGGGGGGGGGRFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKYA
Sbjct: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARRN 240
           IRKLDDTEF+NPWARAYIRVKKYDGSPT      RSRSRSRSRSRSRSRS+SRSRSARRN
Sbjct: 181 IRKLDDTEFKNPWARAYIRVKKYDGSPT------RSRSRSRSRSRSRSRSQSRSRSARRN 240

Query: 241 RSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERSE 285
           RSKS ERSVSRSVSRSRSPSPVKSSRPRSKS+SGSPRE RE SE
Sbjct: 241 RSKSVERSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGREGSE 276

[Close]

BLAST of Tan0007397 vs. ExPASy TrEMBL
Match: A0A6J1K1U7 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=LOC111491646 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 3.0e-122
Identity = 251/283 (88.69%), Postives = 259/283 (91.52%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AIR RDGYNFDGCRLRVELAHGGRGPSS+D RS+YGGS              GGGGGRFG
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS--------------GGGGGRFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA
Sbjct: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARRN 240
           IRKLDDTEF+NPWARAYIRVKKY+GSPT  R RSR+RSRSRSRSRSRSRSRSRSRSA+RN
Sbjct: 181 IRKLDDTEFKNPWARAYIRVKKYEGSPT--RGRSRNRSRSRSRSRSRSRSRSRSRSAKRN 240

Query: 241 RSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERS 284
           RSKSAE+SVSRSVSRSRS SPVKSSR RSKS+SGSPREARE S
Sbjct: 241 RSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 267

[Close]

BLAST of Tan0007397 vs. ExPASy TrEMBL
Match: A0A6J1IB34 (serine/arginine-rich splicing factor SR34A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.8e-120
Identity = 254/291 (87.29%), Postives = 260/291 (89.35%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLF+KYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSY--GGSGGGGGGGGGGGGGGGGGGGR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSS+DRRSSY  GG GGGGGGGGGGGGGGGGGGGR
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGGR 120

Query: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMK 180
           FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNYDDMK
Sbjct: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMK 180

Query: 181 YAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRS------------------------ 240
           YAIRKLDDTEFRNPWAR YIRVKKYDGSPTRSRSRS                        
Sbjct: 181 YAIRKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGR 240

Query: 241 -RSRSRSRSRSRSRSRSRSRSRSARRNRSKSAERSVSRSVSRSRSPSPVKS 265
            RSRSR+RS+SRSRSRSRSRSRSAR NRSKSAERSVSRSVSRSRSPSPVKS
Sbjct: 241 DRSRSRNRSQSRSRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 291

[Close]

BLAST of Tan0007397 vs. ExPASy TrEMBL
Match: A0A6J1H330 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN=LOC111459559 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.4e-119
Identity = 245/283 (86.57%), Postives = 252/283 (89.05%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AIR RDGYNFDGCRLRVELAHGGRGPSS+D RS+YGGS              GGGGGRFG
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS--------------GGGGGRFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYA
Sbjct: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSARRN 240
           IRKLDDTEF+NPWARAYIRVKKY+GSPT        R RSR+RSRSRSRSRSRSRS RRN
Sbjct: 181 IRKLDDTEFKNPWARAYIRVKKYEGSPT--------RGRSRNRSRSRSRSRSRSRSVRRN 240

Query: 241 RSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERS 284
           RSKSAE+SVSRSVSRSRS SPVKSSR RSKS+SGSPREARE S
Sbjct: 241 RSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 261

[Close]

BLAST of Tan0007397 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 379.8 bits (974), Expect = 1.9e-105
Identity = 221/292 (75.68%), Postives = 247/292 (84.59%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AI+ RDGYN DGCRLRVELAHGGRG SS+DRR  Y     GGGG G GGGGGGGG  RFG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGY-----GGGGSGYGGGGGGGGSARFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA
Sbjct: 121 VSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR--------SRSRSRS 240
           IRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSR        SRSRS S
Sbjct: 181 IRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLS 240

Query: 241 RSRSARRNRSKSAERSVSRSVSRSRSPSP-VKSSRPRSKSKSGSPREARERS 284
           RS+S R++ SKS  RS+SRS+S+SRSPSP  K S PR+ S+S S   +R RS
Sbjct: 241 RSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRS 287

[Close]

BLAST of Tan0007397 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 379.8 bits (974), Expect = 1.9e-105
Identity = 221/292 (75.68%), Postives = 247/292 (84.59%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AI+ RDGYN DGCRLRVELAHGGRG SS+DRR  Y     GGGG G GGGGGGGG  RFG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGY-----GGGGSGYGGGGGGGGSARFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA
Sbjct: 121 VSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR--------SRSRSRS 240
           IRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSR        SRSRS S
Sbjct: 181 IRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLS 240

Query: 241 RSRSARRNRSKSAERSVSRSVSRSRSPSP-VKSSRPRSKSKSGSPREARERS 284
           RS+S R++ SKS  RS+SRS+S+SRSPSP  K S PR+ S+S S   +R RS
Sbjct: 241 RSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRS 287

[Close]

BLAST of Tan0007397 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 378.3 bits (970), Expect = 5.6e-105
Identity = 213/275 (77.45%), Postives = 236/275 (85.82%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AI+ RDGYN DGCRLRVELAHGGRG SS+DRR  Y     GGGG G GGGGGGGG  RFG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGY-----GGGGSGYGGGGGGGGSARFG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
           VS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA
Sbjct: 121 VSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR--------SRSRSRS 240
           IRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSR        SRSRS S
Sbjct: 181 IRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLS 240

Query: 241 RSRSARRNRSKSAERSVSRSVSRSRSPSPVKSSRP 268
           RS+S R++ SKS  RS+SRS+S+SRSPSP K   P
Sbjct: 241 RSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSP 270

[Close]

BLAST of Tan0007397 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 295.0 bits (754), Expect = 6.2e-80
Identity = 184/288 (63.89%), Postives = 219/288 (76.04%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AI  RDGY+FDG RLRVELAHGGR  SS+D R S+        GGG GGG G G GG  G
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSF-------NGGGRGGGRGRGDGGSRG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
            S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKYA
Sbjct: 121 PSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRSRSRSR 240
           ++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSRSRSRSR
Sbjct: 181 LKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSR 240

Query: 241 SARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERS 284
           S R  ++KS+ RS ++S SRS          PRSKS+S SPR +R RS
Sbjct: 241 S-RSPKAKSSRRSPAKSTSRSPG--------PRSKSRSPSPRRSRSRS 271

[Close]

BLAST of Tan0007397 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 295.0 bits (754), Expect = 6.2e-80
Identity = 184/288 (63.89%), Postives = 219/288 (76.04%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSNDRRSSYGGSGGGGGGGGGGGGGGGGGGGRFG 120
           AI  RDGY+FDG RLRVELAHGGR  SS+D R S+        GGG GGG G G GG  G
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSF-------NGGGRGGGRGRGDGGSRG 120

Query: 121 VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA 180
            S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKYA
Sbjct: 121 PSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYA 180

Query: 181 IRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRSRSRSR 240
           ++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSRSRSRSR
Sbjct: 181 LKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSR 240

Query: 241 SARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSKSGSPREARERS 284
           S R  ++KS+ RS ++S SRS          PRSKS+S SPR +R RS
Sbjct: 241 S-RSPKAKSSRRSPAKSTSRSPG--------PRSKSRSPSPRRSRSRS 271

The following BLAST results are available for this feature:

BLAST of Tan0007397 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVS6	2.7e-104	75.68	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O22315	8.8e-79	63.89	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	1.0e-74	64.89	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	1.1e-68	59.72	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q6DII2	1.1e-57	62.35	Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE...	[more]

BLAST of Tan0007397 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907230.1	8.9e-129	92.71	serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 s...	[more]
XP_022137780.1	1.7e-127	93.31	serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1...	[more]
XP_023533518.1	4.3e-123	90.11	serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_022996414.1	6.2e-122	88.69	serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415...	[more]
XP_023533513.1	2.4e-121	88.85	serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp...	[more]

BLAST of Tan0007397 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLR9	5.6e-129	94.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1	[more]
A0A6J1C7M8	8.1e-128	93.31	serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1K1U7	3.0e-122	88.69	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IB34	4.8e-120	87.29	serine/arginine-rich splicing factor SR34A-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1H330	2.4e-119	86.57	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Tan0007397 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49430.1	1.9e-105	75.68	SER/ARG-rich protein 34A	[more]
AT3G49430.3	1.9e-105	75.68	SER/ARG-rich protein 34A	[more]
AT3G49430.2	5.6e-105	77.45	SER/ARG-rich protein 34A	[more]
AT1G02840.1	6.2e-80	63.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	6.2e-80	63.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..78 e-value: 1.2E-22 score: 91.2 coord: 128..197 e-value: 1.3E-7 score: 41.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..76 e-value: 3.5E-19 score: 68.4 coord: 129..191 e-value: 3.7E-12 score: 45.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 16.943573
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 127..205 score: 10.20669
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 126..204 e-value: 6.0E-24 score: 85.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..123 e-value: 1.7E-29 score: 104.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..269
None	No IPR available	PANTHER	PTHR23147:SF63	SERINE/ARGININE-RICH SPLICING FACTOR SR34A	coord: 2..283
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..283
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 127..202 e-value: 3.57702E-43 score: 140.334
None	No IPR available	CDD	cd12599	RRM1_SF2_plant_like	coord: 8..79 e-value: 2.15938E-42 score: 138.361
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007397.1	Tan0007397.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding