Tan0007248 (gene) Snake gourd v1

Overview


Name	Tan0007248
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LOB domain-containing protein
Location	LG06: 11283057 .. 11284135 (+)
RNA-Seq Expression	Tan0007248
Synteny	Tan0007248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTCTTTTTCACAGCACAATAATCCTCCAAAGAGTCTCATCAATGGCAGCCTCTGCTTCTTCTTCTTCTTCCTCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTACTTCCGCCACGAACTCGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTCGGTGCGAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCCCACCGCTACGAAGCGGCGGTGACGATCTCCTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTATGGTTGTGTCTCACATATTTTCACTCTCCAACATCAGGTTTTCTTCCTTTCGTCTCATATCTAAACTAATTTACCGTTACTTATCAGCTTAAACTTTTAGATTTAATAATAATTTAACATTTTTGAAGAGGGTTAAGAATAGGAGTAAACGATGGAACTTACTATAACTTATCAGCTTAAACTTTTGAATTTTGTTTATCGATTATTTGAAACCCTAATTTTCGAAATCGATTTTGATCGTTGTTTGAATGGTTGGGGAAATGGCAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTCAACAGCTACATTACTAGAAACCCTAGTGAATTACTGTACGAAAAATCTCCATTTAATTCCGACGAGCTGCAATTACAGGATCTTCAAAGTTGGCTTCTGACGGACAGCTGCAGCGCCGCCGAACCGGAGTTTGAACCTGCGGCGGCTGTGCCGTACGTTGAGATGAGCATCGCCGATTCAAATCTCGCCGGAGATTTCTGCTGCTAAGTGATTATTGTGAATCGTCCGATCTCTTCTCTGGATTTTGAGATCAACGGCAACCAATAAAACGGAAGTATGGGTGTTTTTCTGATAATCTGAATTTCTTTTTTGTTTTTTTTTTCTAAATTTCCCTTTTGTTTTTTCTGAATTTATTTTTTAGTTCTGTCTGTGTTTGTGTGTGATAATGATCTGTAGAATTTTAAATAAGAAAAAAGAACCCTACATATATGTTGGTAAGTATCAATGGGGA

mRNA sequence

TTGCTCTTTTTCACAGCACAATAATCCTCCAAAGAGTCTCATCAATGGCAGCCTCTGCTTCTTCTTCTTCTTCCTCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTACTTCCGCCACGAACTCGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTCGGTGCGAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCCCACCGCTACGAAGCGGCGGTGACGATCTCCTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTATGGTTGTGTCTCACATATTTTCACTCTCCAACATCAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTCAACAGCTACATTACTAGAAACCCTAGTGAATTACTGTACGAAAAATCTCCATTTAATTCCGACGAGCTGCAATTACAGGATCTTCAAAGTTGGCTTCTGACGGACAGCTGCAGCGCCGCCGAACCGGAGTTTGAACCTGCGGCGGCTGTGCCGTACGTTGAGATGAGCATCGCCGATTCAAATCTCGCCGGAGATTTCTGCTGCTAAGTGATTATTGTGAATCGTCCGATCTCTTCTCTGGATTTTGAGATCAACGGCAACCAATAAAACGGAAGTATGGGTGTTTTTCTGATAATCTGAATTTCTTTTTTGTTTTTTTTTTCTAAATTTCCCTTTTGTTTTTTCTGAATTTATTTTTTAGTTCTGTCTGTGTTTGTGTGTGATAATGATCTGTAGAATTTTAAATAAGAAAAAAGAACCCTACATATATGTTGGTAAGTATCAATGGGGA

Coding sequence (CDS)

ATGGCAGCCTCTGCTTCTTCTTCTTCTTCCTCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTACTTCCGCCACGAACTCGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTCGGTGCGAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCCCACCGCTACGAAGCGGCGGTGACGATCTCCTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTATGGTTGTGTCTCACATATTTTCACTCTCCAACATCAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTCAACAGCTACATTACTAGAAACCCTAGTGAATTACTGTACGAAAAATCTCCATTTAATTCCGACGAGCTGCAATTACAGGATCTTCAAAGTTGGCTTCTGACGGACAGCTGCAGCGCCGCCGAACCGGAGTTTGAACCTGCGGCGGCTGTGCCGTACGTTGAGATGAGCATCGCCGATTCAAATCTCGCCGGAGATTTCTGCTGCTAA

Protein sequence

MAASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYITRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNLAGDFCC

Homology

[Close]

BLAST of Tan0007248 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-47
Identity = 96/140 (68.57%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 4   SASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 63
           S+SSSS SPCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 64  SHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQ--ILLNSY 123
           S R EAA+TISYEAQARLQDPIYGCVSHIF LQ QV+NL+A++  L++QAAQ  I  +S 
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 124 ITRNPSELLYE--KSPFNSD 140
            + NP+    +  K+P++ D
Sbjct: 123 TSENPNSYYGDTTKAPYHHD 142

[Close]

BLAST of Tan0007248 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.6e-42
Identity = 83/105 (79.05%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 11  SPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRYEAA 70
           SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLP++ R EAA
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 71  VTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQ 116
           VTISYEAQARL+DPIYGCV+HIF LQ QVM L+AQ+A L+  AAQ
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of Tan0007248 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.2e-41
Identity = 80/112 (71.43%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 7   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 66
           + S SPCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 67  YEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILL 119
            EAA TI YEAQAR QDPIYGCVSHIF+LQ QV+NL+ Q+  L++QA Q ++
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of Tan0007248 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-37
Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = 0


Query: 4   SASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 63
           S+      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 64  SHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYIT 123
             R +A VTI YEAQAR++DPIYGCV+HIF LQ QV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 124 R-----NPSELLYEKSP 136
           R      P  L +   P
Sbjct: 149 RPQPMPQPQPLFFTPPP 165

[Close]

BLAST of Tan0007248 vs. ExPASy Swiss-Prot
Match: O81322 (LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 SV=2)

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-36
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 3   ASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 62
           + +++    PCGACKFLRRKCV  C+FAPYF    G SHF+A+HKVFGASNASKLL  +P
Sbjct: 2   SGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIP 61

Query: 63  VSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQI 117
            S R +A VT++YEA ARL+DP+YGCV HIF LQHQVMNL+A++AY++ Q + +
Sbjct: 62  ASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

[Close]

BLAST of Tan0007248 vs. NCBI nr
Match: XP_023004822.1 (LOB domain-containing protein 29-like [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 3.8e-80
Identity = 161/187 (86.10%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 1   MAASASSSSSS-PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLA 60
           MAAS+SSSSSS PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLA
Sbjct: 1   MAASSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLA 60

Query: 61  HLPVSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLN 120
           HLPVSHR +AAVTISYEAQARLQDPIYGC+S IF LQHQVMNLRAQVAYLREQAAQILLN
Sbjct: 61  HLPVSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLN 120

Query: 121 SYITRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSN 180
            YITRNP+ELLY  S   SDE QL DLQ+WLL +SCS A PEFEP AA PYVEM IADSN
Sbjct: 121 GYITRNPNELLYGNSLSYSDE-QLLDLQTWLLEESCSTAAPEFEPTAA-PYVEMGIADSN 180

Query: 181 LAGDFCC 187
           LAGDFCC
Sbjct: 181 LAGDFCC 185

[Close]

BLAST of Tan0007248 vs. NCBI nr
Match: XP_038896394.1 (LOB domain-containing protein 29-like [Benincasa hispida])

HSP 1 Score: 307.8 bits (787), Expect = 6.5e-80
Identity = 158/183 (86.34%), Postives = 168/183 (91.80%), Query Frame = 0


Query: 3   ASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 62
           A++SSSSS PCGACKFLRRKCVNGCIFAP+FRHELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSSPPCGACKFLRRKCVNGCIFAPHFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 63  VSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYI 122
           VSHR +AAVTISYEAQARLQDPIYGCVSHIF LQ QVMNLRAQVAYLREQAAQILLN+Y 
Sbjct: 62  VSHRCDAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYT 121

Query: 123 TRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNLAG 182
           TRNP EL YEKSPF SD+  L DLQ+WLL +SCSAA PEFEP AAVPYVEMS+ DSNLAG
Sbjct: 122 TRNPIELPYEKSPFYSDD-PLLDLQTWLLAESCSAAAPEFEP-AAVPYVEMSVVDSNLAG 181

Query: 183 DFC 186
           +FC
Sbjct: 182 NFC 182

[Close]

BLAST of Tan0007248 vs. NCBI nr
Match: XP_004150342.1 (LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical protein Csa_015971 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 2.5e-79
Identity = 155/184 (84.24%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 3   ASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 62
           A++SSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 63  VSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYI 122
           VSHR EAAVTISYEAQARLQDPIYGCVSHI  LQ QVMNLRAQVAYLREQAAQILLN+Y 
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYT 121

Query: 123 TRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNLAG 182
           TRNP+ELLYEKSPF   +    DLQSWLL +SCSA  PE EP AAVPY EMS+ DS LAG
Sbjct: 122 TRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEP-AAVPYFEMSVVDSKLAG 181

Query: 183 DFCC 187
           DFCC
Sbjct: 182 DFCC 184

[Close]

BLAST of Tan0007248 vs. NCBI nr
Match: XP_008447245.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 7.2e-79
Identity = 156/184 (84.78%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 3   ASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 62
           A++SSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 63  VSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYI 122
           VSHR EAAVTISYEAQARLQDPIYGCVSHI  LQ QVMNLRAQVA LREQAAQILLN+Y 
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYT 121

Query: 123 TRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNLAG 182
           TRN +EL YEKSPF   +    DLQSWLLT+SC+AA PEFEP AAVPY EMS+ DS LAG
Sbjct: 122 TRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEP-AAVPYFEMSVIDSKLAG 181

Query: 183 DFCC 187
           DFCC
Sbjct: 182 DFCC 184

[Close]

BLAST of Tan0007248 vs. NCBI nr
Match: XP_022156602.1 (LOB domain-containing protein 29-like [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 7.2e-79
Identity = 158/186 (84.95%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MAASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60
           MAASA SSSSSPCGACKFLRRKCVNGCIFAPYFRHELG SHFSA+HKVFGASNASKLLAH
Sbjct: 1   MAASA-SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAH 60

Query: 61  LPVSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNS 120
           LPVSHR EAA+TISYEAQARLQDPIYGCVSHIFTLQ QV+NLRAQVAYLREQAAQILLN+
Sbjct: 61  LPVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQVAYLREQAAQILLNN 120

Query: 121 YITRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNL 180
           Y  RNP+ELLY KSPF+ D   LQDLQSWLL +  SAA PEFEP AAVP+VEMS+AD N+
Sbjct: 121 YTIRNPNELLYGKSPFSGD--PLQDLQSWLLAEDRSAAAPEFEP-AAVPFVEMSLADPNV 180

Query: 181 AGDFCC 187
           AGD CC
Sbjct: 181 AGDCCC 182

[Close]

BLAST of Tan0007248 vs. ExPASy TrEMBL
Match: A0A6J1KRG7 (LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC111498009 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.9e-80
Identity = 161/187 (86.10%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 1   MAASASSSSSS-PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLA 60
           MAAS+SSSSSS PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLA
Sbjct: 1   MAASSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLA 60

Query: 61  HLPVSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLN 120
           HLPVSHR +AAVTISYEAQARLQDPIYGC+S IF LQHQVMNLRAQVAYLREQAAQILLN
Sbjct: 61  HLPVSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLN 120

Query: 121 SYITRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSN 180
            YITRNP+ELLY  S   SDE QL DLQ+WLL +SCS A PEFEP AA PYVEM IADSN
Sbjct: 121 GYITRNPNELLYGNSLSYSDE-QLLDLQTWLLEESCSTAAPEFEPTAA-PYVEMGIADSN 180

Query: 181 LAGDFCC 187
           LAGDFCC
Sbjct: 181 LAGDFCC 185

[Close]

BLAST of Tan0007248 vs. ExPASy TrEMBL
Match: A0A0A0K5D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 155/184 (84.24%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 3   ASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 62
           A++SSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 63  VSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYI 122
           VSHR EAAVTISYEAQARLQDPIYGCVSHI  LQ QVMNLRAQVAYLREQAAQILLN+Y 
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYT 121

Query: 123 TRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNLAG 182
           TRNP+ELLYEKSPF   +    DLQSWLL +SCSA  PE EP AAVPY EMS+ DS LAG
Sbjct: 122 TRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEP-AAVPYFEMSVVDSKLAG 181

Query: 183 DFCC 187
           DFCC
Sbjct: 182 DFCC 184

[Close]

BLAST of Tan0007248 vs. ExPASy TrEMBL
Match: A0A6J1DSE8 (LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC111023473 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.5e-79
Identity = 158/186 (84.95%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MAASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60
           MAASA SSSSSPCGACKFLRRKCVNGCIFAPYFRHELG SHFSA+HKVFGASNASKLLAH
Sbjct: 1   MAASA-SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAH 60

Query: 61  LPVSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNS 120
           LPVSHR EAA+TISYEAQARLQDPIYGCVSHIFTLQ QV+NLRAQVAYLREQAAQILLN+
Sbjct: 61  LPVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQVAYLREQAAQILLNN 120

Query: 121 YITRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNL 180
           Y  RNP+ELLY KSPF+ D   LQDLQSWLL +  SAA PEFEP AAVP+VEMS+AD N+
Sbjct: 121 YTIRNPNELLYGKSPFSGD--PLQDLQSWLLAEDRSAAAPEFEP-AAVPFVEMSLADPNV 180

Query: 181 AGDFCC 187
           AGD CC
Sbjct: 181 AGDCCC 182

[Close]

BLAST of Tan0007248 vs. ExPASy TrEMBL
Match: A0A1S3BGZ5 (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.5e-79
Identity = 156/184 (84.78%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 3   ASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 62
           A++SSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 63  VSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYI 122
           VSHR EAAVTISYEAQARLQDPIYGCVSHI  LQ QVMNLRAQVA LREQAAQILLN+Y 
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYT 121

Query: 123 TRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNLAG 182
           TRN +EL YEKSPF   +    DLQSWLLT+SC+AA PEFEP AAVPY EMS+ DS LAG
Sbjct: 122 TRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEP-AAVPYFEMSVIDSKLAG 181

Query: 183 DFCC 187
           DFCC
Sbjct: 182 DFCC 184

[Close]

BLAST of Tan0007248 vs. ExPASy TrEMBL
Match: A0A5D3D179 (LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003110 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.6e-78
Identity = 152/184 (82.61%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 3   ASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 62
           A++SSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 63  VSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYI 122
           VSHR EAAVTISYEAQARLQDPIYGCVSHI  LQ QVMNLRAQVA LREQAAQILLN+Y 
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYT 121

Query: 123 TRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNLAG 182
           TRNP+EL YEKSP    +    DLQSWLL +SC+ A PEFEP AA+PY EMS+ +S LAG
Sbjct: 122 TRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEP-AAIPYFEMSVVNSKLAG 181

Query: 183 DFCC 187
           DFCC
Sbjct: 182 DFCC 184

[Close]

BLAST of Tan0007248 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 188.3 bits (477), Expect = 5.4e-48
Identity = 96/140 (68.57%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 4   SASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 63
           S+SSSS SPCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 64  SHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQ--ILLNSY 123
           S R EAA+TISYEAQARLQDPIYGCVSHIF LQ QV+NL+A++  L++QAAQ  I  +S 
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 124 ITRNPSELLYE--KSPFNSD 140
            + NP+    +  K+P++ D
Sbjct: 123 TSENPNSYYGDTTKAPYHHD 142

[Close]

BLAST of Tan0007248 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 168.7 bits (426), Expect = 4.4e-42
Identity = 80/112 (71.43%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 7   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 66
           + S SPCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 67  YEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILL 119
            EAA TI YEAQAR QDPIYGCVSHIF+LQ QV+NL+ Q+  L++QA Q ++
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of Tan0007248 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-38
Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = 0


Query: 4   SASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 63
           S+      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 64  SHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYIT 123
             R +A VTI YEAQAR++DPIYGCV+HIF LQ QV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 124 R-----NPSELLYEKSP 136
           R      P  L +   P
Sbjct: 149 RPQPMPQPQPLFFTPPP 165

[Close]

BLAST of Tan0007248 vs. TAIR 10
Match: AT4G00210.1 (LOB domain-containing protein 31 )

HSP 1 Score: 151.8 bits (382), Expect = 5.6e-37
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 3   ASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 62
           + +++    PCGACKFLRRKCV  C+FAPYF    G SHF+A+HKVFGASNASKLL  +P
Sbjct: 2   SGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIP 61

Query: 63  VSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQI 117
            S R +A VT++YEA ARL+DP+YGCV HIF LQHQVMNL+A++AY++ Q + +
Sbjct: 62  ASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

[Close]

BLAST of Tan0007248 vs. TAIR 10
Match: AT2G31310.1 (LOB domain-containing protein 14 )

HSP 1 Score: 151.0 bits (380), Expect = 9.5e-37
Identity = 72/105 (68.57%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 11  SPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRYEAA 70
           SPCG CKFLRRKCV GC+FAPYF +E G+S+F+AIHKVFGASN SKL++HLP   R +A 
Sbjct: 6   SPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAV 65

Query: 71  VTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQ 116
            TISYEA +RL DPIYGCVS IF+LQ QV++L+AQV  LRE+A++
Sbjct: 66  RTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

The following BLAST results are available for this feature:

BLAST of Tan0007248 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2J7	7.6e-47	68.57	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	5.6e-42	79.05	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	6.2e-41	71.43	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
O22131	1.4e-37	57.66	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
O81322	7.9e-36	61.40	LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 S...	[more]

BLAST of Tan0007248 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004822.1	3.8e-80	86.10	LOB domain-containing protein 29-like [Cucurbita maxima]	[more]
XP_038896394.1	6.5e-80	86.34	LOB domain-containing protein 29-like [Benincasa hispida]	[more]
XP_004150342.1	2.5e-79	84.24	LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical prot...	[more]
XP_008447245.1	7.2e-79	84.78	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
XP_022156602.1	7.2e-79	84.95	LOB domain-containing protein 29-like [Momordica charantia]	[more]

BLAST of Tan0007248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRG7	1.9e-80	86.10	LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC11149800...	[more]
A0A0A0K5D4	1.2e-79	84.24	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV...	[more]
A0A6J1DSE8	3.5e-79	84.95	LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A1S3BGZ5	3.5e-79	84.78	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV...	[more]
A0A5D3D179	8.6e-78	82.61	LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Tan0007248 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58190.1	5.4e-48	68.57	lateral organ boundaries-domain 29	[more]
AT2G42440.1	4.4e-42	71.43	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	1.0e-38	57.66	LOB domain-containing protein 18	[more]
AT4G00210.1	5.6e-37	61.40	LOB domain-containing protein 31	[more]
AT2G31310.1	9.5e-37	68.57	LOB domain-containing protein 14	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 12..109 e-value: 1.1E-34 score: 118.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 11..113 score: 21.846491
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 8..145
None	No IPR available	PANTHER	PTHR31529:SF26	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 8..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007248.1	Tan0007248.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus