Tan0006888 (gene) Snake gourd v1

Overview


Name	Tan0006888
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein RADIALIS-like 1
Location	LG02: 7938487 .. 7939687 (-)
RNA-Seq Expression	Tan0006888
Synteny	Tan0006888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCTCCAATTGTTGTTTGTTTTTTTTGTTCTTTCTATATCTTGTGGTTTCTAAGGTCACAAATCATCAAAATCCTCTTGGCTTCCTTATAAATAGCAACCACTCCTTGCTCTTTGCCACATATCATCATTTTCCTTGTAAACTTTAATTAAGTTCCTCTTTCACTTCAAACCCATTTTAACCAATGGCTTCAATGTCAGCTCATGGGTCTAGTTCATGGACTGCAATGGAAAACAAAGCATTTGAGAAAGCTCTGGCAGTGTTTGACCAAGACACACCCGAGCGATGGTTGAATGTTGCAAAGGCCATTGGATCAGGAAAATCGGAAGAAGAAGTAAAGAGGCATTATGAACTTCTTGTGAAAGATGTTAAGTGTATTGAGCTTGGTGAAATTACTTGCCCCTATCGAAGCTCTACGAGATAGTGTTATTGGCTTTTGATAGAAAGAGGTAATAATTGAATGGATGTAAATTACACTCTTTGGCTATAATAAAGTATGCATACCATTTCAAATTTAATAAAAAGGTTACGTTTATAATGGTTATGAAAGTTGAAGTATGTATATATAACACTATATATTGTCATATTTGCTTTGAAGGTAGCTCTCTCTTTTTATATCTTTTGTAATAAAATAACTTTTACATATACACGTACTTTATGCAATGATCAAATTCATCCTAATATATTTATTAAGATTTTTCTCTTAAAAAATTACTTTTCATCACATAAAAACACTCAATAACTTTAAATGATTGATTTTTTGAGAGGTGCGTGCATAAGAGTGTCAATATGTCATTATCAATAAATAGGGGCCTCCCTTTCGCATGGATTCTTCTGTAAACGGATGGCTACATATTTCAGTAAAAACAAAATAACTCATCATCTTTTAAGCTTTTTGAAAGGGCATCAATTTCTTCTTGTTCTTTGAAGCTAAAGCTGCACATTGAGCATTGAACAGAGGGTATGGTAAACTCGGGTAGGTGAGCATTGAACAACACAACTACAAATGACAGTATAGTGCAAATAGAGGAGAGTGCATCTATCATATAATGGAACAAACAATAAAATGTTGAAGCCACAATTAGGAAAAAAAAATAGAAGCTATGGTTTGGAAAAAATAAAAGCGGAAAAAAAATAGGACCCAAGAACAGTAGAACAGAAATAAGATTTGTGTGTACTCAATATGAGACTGAAAGTTGT

mRNA sequence

CCATCTCCAATTGTTGTTTGTTTTTTTTGTTCTTTCTATATCTTGTGGTTTCTAAGGTCACAAATCATCAAAATCCTCTTGGCTTCCTTATAAATAGCAACCACTCCTTGCTCTTTGCCACATATCATCATTTTCCTTGTAAACTTTAATTAAGTTCCTCTTTCACTTCAAACCCATTTTAACCAATGGCTTCAATGTCAGCTCATGGGTCTAGTTCATGGACTGCAATGGAAAACAAAGCATTTGAGAAAGCTCTGGCAGTGTTTGACCAAGACACACCCGAGCGATGGTTGAATGTTGCAAAGGCCATTGGATCAGGAAAATCGGAAGAAGAAGTAAAGAGGCATTATGAACTTCTTGTGAAAGATGTTAAGTGTATTGAGCTTGGTGAAATTACTTGCCCCTATCGAAGCTCTACGAGATAGTGTTATTGGCTTTTGATAGAAAGAGCTAAAGCTGCACATTGAGCATTGAACAGAGGGTATGGTAAACTCGGGTAGGTGAGCATTGAACAACACAACTACAAATGACAGTATAGTGCAAATAGAGGAGAGTGCATCTATCATATAATGGAACAAACAATAAAATGTTGAAGCCACAATTAGGAAAAAAAAATAGAAGCTATGGTTTGGAAAAAATAAAAGCGGAAAAAAAATAGGACCCAAGAACAGTAGAACAGAAATAAGATTTGTGTGTACTCAATATGAGACTGAAAGTTGT

Coding sequence (CDS)

ATGGCTTCAATGTCAGCTCATGGGTCTAGTTCATGGACTGCAATGGAAAACAAAGCATTTGAGAAAGCTCTGGCAGTGTTTGACCAAGACACACCCGAGCGATGGTTGAATGTTGCAAAGGCCATTGGATCAGGAAAATCGGAAGAAGAAGTAAAGAGGCATTATGAACTTCTTGTGAAAGATGTTAAGTGTATTGAGCTTGGTGAAATTACTTGCCCCTATCGAAGCTCTACGAGATAG

Protein sequence

MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR

Homology

[Close]

BLAST of Tan0006888 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-20
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 2  ASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKD 61
          +SMS+  S SWTA +NKAFE+ALA +DQDTP RW NVAK +G GK+ EEVKRHYELLV+D
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVG-GKTTEEVKRHYELLVQD 63

Query: 62 VKCIELGEITCP-YRSS 78
          +  IE G +  P YR+S
Sbjct: 64 INSIENGHVPFPNYRTS 79

[Close]

BLAST of Tan0006888 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 46/77 (59.74%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 3  SMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDV 62
          SMS++GS SWT  +NKAFE+ALAV+DQDTP+RW NVA+A+G GK+ EE KR Y+LLV+D+
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVG-GKTPEEAKRQYDLLVRDI 64

Query: 63 KCIELGEITCP-YRSST 79
          + IE G +  P Y+++T
Sbjct: 65 ESIENGHVPFPDYKTTT 80

[Close]

BLAST of Tan0006888 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-19
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MAS S   S+SWT  ENK FE+ALA +DQDTP+RW NVA+A+G GKS EEV+RHYELL++
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVG-GKSAEEVRRHYELLIR 60

Query: 61 DVKCIELGEITCP-YRSS 78
          DV  IE G    P YRS+
Sbjct: 61 DVNDIESGRYPHPNYRSN 77

[Close]

BLAST of Tan0006888 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MAS S   SSSWT+ +NK FE+ALAV+D+DTP+RW NVAKA+GS KS EEVKRHY++LV+
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGS-KSAEEVKRHYDILVE 60

Query: 61 DVKCIELGEITCP 74
          D+  IE   +  P
Sbjct: 61 DLMNIEQDLVPLP 72

[Close]

BLAST of Tan0006888 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.7e-17
Identity = 44/78 (56.41%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MAS    G   W+A ENKAFE+ALAV+D+DTP+RW NVA+A+  G++ EEVK+HYE+LV+
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVE 60

Query: 61 DVKCIELGEITCP-YRSS 78
          D+K IE G++  P YR++
Sbjct: 61 DIKYIESGKVPFPNYRTT 76

[Close]

BLAST of Tan0006888 vs. NCBI nr
Match: XP_022952660.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-like 1 [Cucurbita moschata] >XP_023554744.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 4.2e-28
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMSAHGSS+WTA ENKAFEKALAVFDQDTPERW+NVAKAIG GK+E+EVKRHY+LLVK
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIG-GKTEDEVKRHYQLLVK 60

Query: 61 DVKCIELGEITCPYRSSTR 80
          DVK IE GEI  PYRSSTR
Sbjct: 61 DVKHIESGEINFPYRSSTR 78

[Close]

BLAST of Tan0006888 vs. NCBI nr
Match: XP_022972544.1 (protein RADIALIS-like 1 [Cucurbita maxima] >XP_022972545.1 protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 3.6e-27
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMSAHGSS+WTA ENKAFEKALAVFDQDTP+RW+NVAKAIG GK+E+EVKRHY+LLV 
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPDRWVNVAKAIG-GKTEDEVKRHYQLLVN 60

Query: 61 DVKCIELGEITCPYRSSTR 80
          DVK IE GEI  PYRSSTR
Sbjct: 61 DVKHIESGEINFPYRSSTR 78

[Close]

BLAST of Tan0006888 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMS+HGSS+WTA +NKAFEKALAV+DQDTPERWLNVAKA+G GK+ EEVKRHYELLV+
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVG-GKTAEEVKRHYELLVE 60

Query: 61 DVKCIELGEITCPYRSS 78
          DVK IE G+++ PYR+S
Sbjct: 61 DVKFIESGQVSFPYRTS 76

[Close]

BLAST of Tan0006888 vs. NCBI nr
Match: XP_008447026.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 60/79 (75.95%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMSAHGS+ WTA+ENKAFEKALA++D+DTPERWLNVAKAIG GK+EE+VKRHY+LL++
Sbjct: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIG-GKTEEDVKRHYQLLLE 60

Query: 61 DVKCIELGEITCPYRSSTR 80
          DV  IE G+I  PYR+STR
Sbjct: 61 DVNHIENGQIPFPYRNSTR 78

[Close]

BLAST of Tan0006888 vs. NCBI nr
Match: XP_022136067.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMSAHGS SWTAM+NKAFE+ALAV+D+DTP+RWLNVAKAIG  K+EEEVKRHY+LLV+
Sbjct: 1  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGE-KTEEEVKRHYQLLVE 60

Query: 61 DVKCIELGEITCPYR 76
          DVK IE GE++ PYR
Sbjct: 61 DVKHIEFGEVSFPYR 74

[Close]

BLAST of Tan0006888 vs. ExPASy TrEMBL
Match: A0A6J1GKV1 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMSAHGSS+WTA ENKAFEKALAVFDQDTPERW+NVAKAIG GK+E+EVKRHY+LLVK
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIG-GKTEDEVKRHYQLLVK 60

Query: 61 DVKCIELGEITCPYRSSTR 80
          DVK IE GEI  PYRSSTR
Sbjct: 61 DVKHIESGEINFPYRSSTR 78

[Close]

BLAST of Tan0006888 vs. ExPASy TrEMBL
Match: A0A6J1I8Y0 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471083 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMSAHGSS+WTA ENKAFEKALAVFDQDTP+RW+NVAKAIG GK+E+EVKRHY+LLV 
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPDRWVNVAKAIG-GKTEDEVKRHYQLLVN 60

Query: 61 DVKCIELGEITCPYRSSTR 80
          DVK IE GEI  PYRSSTR
Sbjct: 61 DVKHIESGEINFPYRSSTR 78

[Close]

BLAST of Tan0006888 vs. ExPASy TrEMBL
Match: A0A0A0K3K0 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26
Identity = 62/79 (78.48%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMSAHGSS+WTA+ENKAFEKALA++D+DTPERWLNVAKAIG GK+EEEVKRHY+LL++
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIG-GKTEEEVKRHYQLLLE 60

Query: 61 DVKCIELGEITCPYRSSTR 80
          DV  IE G+I  PYR STR
Sbjct: 61 DVNHIESGQIPFPYRKSTR 78

[Close]

BLAST of Tan0006888 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMS+HGSS+WTA +NKAFEKALAV+DQDTPERWLNVAKA+G GK+ EEVKRHYELLV+
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVG-GKTAEEVKRHYELLVE 60

Query: 61 DVKCIELGEITCPYRSS 78
          DVK IE G+++ PYR+S
Sbjct: 61 DVKFIESGQVSFPYRTS 76

[Close]

BLAST of Tan0006888 vs. ExPASy TrEMBL
Match: A0A1S3BGF0 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 60/79 (75.95%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MASMSAHGS+ WTA+ENKAFEKALA++D+DTPERWLNVAKAIG GK+EE+VKRHY+LL++
Sbjct: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIG-GKTEEDVKRHYQLLLE 60

Query: 61 DVKCIELGEITCPYRSSTR 80
          DV  IE G+I  PYR+STR
Sbjct: 61 DVNHIENGQIPFPYRNSTR 78

[Close]

BLAST of Tan0006888 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-21
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 2  ASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKD 61
          +SMS+  S SWTA +NKAFE+ALA +DQDTP RW NVAK +G GK+ EEVKRHYELLV+D
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVG-GKTTEEVKRHYELLVQD 63

Query: 62 VKCIELGEITCP-YRSS 78
          +  IE G +  P YR+S
Sbjct: 64 INSIENGHVPFPNYRTS 79

[Close]

BLAST of Tan0006888 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 9.1e-21
Identity = 46/77 (59.74%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 3  SMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDV 62
          SMS++GS SWT  +NKAFE+ALAV+DQDTP+RW NVA+A+G GK+ EE KR Y+LLV+D+
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVG-GKTPEEAKRQYDLLVRDI 64

Query: 63 KCIELGEITCP-YRSST 79
          + IE G +  P Y+++T
Sbjct: 65 ESIENGHVPFPDYKTTT 80

[Close]

BLAST of Tan0006888 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MAS S   SSSWT+ +NK FE+ALAV+D+DTP+RW NVAKA+GS KS EEVKRHY++LV+
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGS-KSAEEVKRHYDILVE 60

Query: 61 DVKCIELGEITCP 74
          D+  IE   +  P
Sbjct: 61 DLMNIEQDLVPLP 72

[Close]

BLAST of Tan0006888 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+G GK+ EEVKRHY++LV+
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVG-GKTVEEVKRHYDILVE 60

Query: 61 DVKCIELGEITCP 74
          D+  IE G +  P
Sbjct: 61 DLINIETGRVPLP 72

[Close]

BLAST of Tan0006888 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVK 60
          MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+G GK+ EEVKRHY++LV+
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVG-GKTVEEVKRHYDILVE 60

Query: 61 DVKCIELGEITCP 74
          D+  IE G +  P
Sbjct: 61 DLINIETGRVPLP 72

The following BLAST results are available for this feature:

BLAST of Tan0006888 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	4.4e-20	63.64	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.3e-19	59.74	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	8.3e-19	62.82	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q8GW75	1.6e-17	61.64	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q58FS3	7.7e-17	56.41	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Tan0006888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952660.1	4.2e-28	86.08	protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-li...	[more]
XP_022972544.1	3.6e-27	83.54	protein RADIALIS-like 1 [Cucurbita maxima] >XP_022972545.1 protein RADIALIS-like...	[more]
XP_022136064.1	5.7e-25	77.92	protein RADIALIS-like 1 [Momordica charantia]	[more]
XP_008447026.1	5.7e-25	75.95	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022136067.1	1.7e-24	78.67	protein RADIALIS-like 1 [Momordica charantia]	[more]

BLAST of Tan0006888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKV1	2.0e-28	86.08	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1	[more]
A0A6J1I8Y0	1.7e-27	83.54	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471083 PE=4 SV=1	[more]
A0A0A0K3K0	4.3e-26	78.48	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 S...	[more]
A0A6J1C385	2.8e-25	77.92	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]
A0A1S3BGF0	2.8e-25	75.95	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1	[more]

BLAST of Tan0006888 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	3.1e-21	63.64	RAD-like 1	[more]
AT2G21650.1	9.1e-21	59.74	Homeodomain-like superfamily protein	[more]
AT1G19510.1	1.1e-18	61.64	RAD-like 5	[more]
AT1G75250.1	1.2e-17	58.90	RAD-like 6	[more]
AT1G75250.2	1.2e-17	58.90	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..61 e-value: 2.3E-7 score: 40.5
None	No IPR available	GENE3D	1.10.10.60		coord: 9..59 e-value: 4.6E-19 score: 70.1
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..77
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..77
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..63 score: 9.752563
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006888.1	Tan0006888.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity