Tan0006806 (gene) Snake gourd v1

Overview


Name	Tan0006806
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	40S ribosomal protein S10-1-like
Location	LG01: 11431032 .. 11432875 (+)
RNA-Seq Expression	Tan0006806
Synteny	Tan0006806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACCTCTCTTCTTCTTCAACTCTTTCTCTTCTATCACAGCGTCTAATTTATGTTTGTCTCTGTTTTATCGTTCCAATAGTTGTGGGGTATTTCAAAAGGAATTGATTTTTGAAATGAATCGATCCGGGAGTGGGAATTGTTTCCCTTTGTGTATTTTGAATTCTTGTAGTGGGTCAAGCTCTCTTTCGTTCAAAGGGTCTCTCATGTTCATTTGTTTCTTTTCTTCAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTTCTTCAAGGTATAATTAAACTCAATCACTCTTAAACGTGTTTTTTTTAAAAAAAAAAAATCAAGGATGATTCCGCTATATTAATTTTTGGTTGTTGTTGTCAATTCCAGAGGGGGTTTATTATGCTAAAAAGGACTACAATTTGGCCAAGCACCCAGAAATTGATGGGCCTAATTTGCAGGTTATTAAGCTGATGTAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACATTTGCTTGGATGCGTTACTAGTGGTACCTCACCAATGATGGCATTGACTTCCTCAGGACGTACCTCAATCTTCCATCTGAAATTCTTCCTGCTACCTTGAAAAAACAAGCCAAGCCCGCTGGCAGGCCCTTTGGCAGACCACCCGGTGATTGCCCACGCATAAATTATATCTATAATGCCGATTAAGTCATTTGGTTTATTGCTGATTTATCTGTGCTTTTTGAACTATGGATTATGGATTTTTTCGTTACAGTTCTAGGTTTATAGATGGATGTGTATTTTTTATGTGATGGTATAATGTAAGGCCTTATTTTAGCAGCTGTTGTGTAATGCATCTGTTTTTTTTAATTAGCAAGCTGTTTGTATTCTTATTAGTATTCTGATAGAGTTTTGGTGATTCTTATGAATTAGGGGTGCACCATGGTTTTGAGGATGGTGAGAGGAGGTTTGGTGACCTGGATGGCTACCGTGGAGGTCGTCGTGGACCTGGTGGTGAGTTTGCTGGTGACAAGGGAGGAGCTCCTGCAGATTACAGGCCTTTTTTTGGGGTAATTTTTATATCATTCATTTTACATCAACATAGTGATATACGTAATGTGGTTGATGCTTTCTACATAAGAATGCTGCTTTTTCCTGCTTTTATTCTGCGCTTGGGATGGTTCTTGCAGAAAGTTAATAAAGGCATTACAGTCATTGTTCATGTATATAGTTAGAATTTTATTAAGGCAACGCTGTTGCACAGTGAGATAGTAAAATGGTTTTGTCATTCGTTAGTAATTGGTTCATAAGTTGATGGGATGACATCTTATTCTTATAGTTAGTTTAGTCTCCTCATCTGTTCATGCTTTCCTTCATAAGTGCTCCCTAATCTGTTTGTCTATGCTAATAACTCAGATTATGACGTTGAGTATTAGTTTTTGTGGCATTTGTATGTCATGGTCTCTGTGAACTTGCAATAAGATGAGTGTGGGTTTTACCTAAGTTGGTTTGACATATTCAAACTATTTACGTATTAGGTTAAAATGGGGGTTGTGGCCACTCTTTTTCAAGAATGAATGAGAGTAATAAAGAAATGATCAGCTGAAATGTCCGAAATGTTATAAGAAATGGATTTATTGGGTCCTGTGGAATGCAATCCTGGTGCAAAATGACATTCGTATGGTATTATAAGATTATTATAGAAGTTATTTTGAACTAATTGGAACTTTGTGATGGTTGTTTGCGAGTTGTTCTTCGATTTTTGTCTTTGATTGTTGTCTTATTTATACCTAAAATTTTCTCAGGGTCCTGGTGGAAGACCAGGCTTCGGCCGGGCTGCAGCACACTCAAACCTTCCTTGA

mRNA sequence

ATGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTTCTTCAAGAGGGGGTTTATTATGCTAAAAAGGACTACAATTTGGCCAAGCACCCAGAAATTGATGGGCCTAATTTGCAGTGGTACCTCACCAATGATGGCATTGACTTCCTCAGGACGTACCTCAATCTTCCATCTGAAATTCTTCCTGCTACCTTGAAAAAACAAGCCAAGCCCGCTGGCAGGCCCTTTGGCAGACCACCCGGGGTGCACCATGGTTTTGAGGATGGTGAGAGGAGGTTTGGTGACCTGGATGGCTACCGTGGAGGTCGTCGTGGACCTGGTGGTGAGTTTGCTGGTGACAAGGGAGGAGCTCCTGCAGATTACAGGCCTTTTTTTGGGGGTCCTGGTGGAAGACCAGGCTTCGGCCGGGCTGCAGCACACTCAAACCTTCCTTGA

Coding sequence (CDS)

ATGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTTCTTCAAGAGGGGGTTTATTATGCTAAAAAGGACTACAATTTGGCCAAGCACCCAGAAATTGATGGGCCTAATTTGCAGTGGTACCTCACCAATGATGGCATTGACTTCCTCAGGACGTACCTCAATCTTCCATCTGAAATTCTTCCTGCTACCTTGAAAAAACAAGCCAAGCCCGCTGGCAGGCCCTTTGGCAGACCACCCGGGGTGCACCATGGTTTTGAGGATGGTGAGAGGAGGTTTGGTGACCTGGATGGCTACCGTGGAGGTCGTCGTGGACCTGGTGGTGAGTTTGCTGGTGACAAGGGAGGAGCTCCTGCAGATTACAGGCCTTTTTTTGGGGGTCCTGGTGGAAGACCAGGCTTCGGCCGGGCTGCAGCACACTCAAACCTTCCTTGA

Protein sequence

MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQWYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVHHGFEDGERRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGRAAAHSNLP

Homology

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BLAST of Tan0006806 vs. ExPASy Swiss-Prot
Match: P0DKK8 (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 100/167 (59.88%), Postives = 110/167 (65.87%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MII +KNR EI KYL QEGV YAKKDYNLAKHP+ID PNLQ                   
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGR-PPGVH----HGFEDG 120
                WYLTNDGI+ LR YLNLPSEI+PATLKK A+P GRPFG  PPG        FE  
Sbjct: 61  WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120

Query: 121 ERRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR 139
             RFGD DGYRGG RG  G+F G+KGGAPA+++P F   GGRPGFGR
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGR 167

[Close]

BLAST of Tan0006806 vs. ExPASy Swiss-Prot
Match: P0DKK9 (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 100/167 (59.88%), Postives = 110/167 (65.87%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MII +KNR EI KYL QEGV YAKKDYNLAKHP+ID PNLQ                   
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGR-PPGVH----HGFEDG 120
                WYLTNDGI+ LR YLNLPSEI+PATLKK A+P GRPFG  PPG        FE  
Sbjct: 61  WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120

Query: 121 ERRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR 139
             RFGD DGYRGG RG  G+F G+KGGAPA+++P F   GGRPGFGR
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGR 167

[Close]

BLAST of Tan0006806 vs. ExPASy Swiss-Prot
Match: Q9SW09 (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.6e-42
Identity = 98/168 (58.33%), Postives = 111/168 (66.07%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISE NRREI KYL +EGV +AKKD+NL KHP ID PNLQ                   
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVHH---GFEDGER 120
                W+LTN+GI+FLRTYLNLPS+++PATLKK AKP GRPFG PPG         DG+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120

Query: 121 -RFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGRAA 141
            RFGD DGYRGG RG       +KGGAPAD++P F G GGRPGFGR A
Sbjct: 121 PRFGDRDGYRGGPRG-----GDEKGGAPADFQPSFQGGGGRPGFGRGA 163

[Close]

BLAST of Tan0006806 vs. ExPASy Swiss-Prot
Match: Q9LTF2 (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 2.2e-41
Identity = 99/168 (58.93%), Postives = 112/168 (66.67%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISE NR+EI KYL +EGV +AKKD+NLAKHP ID PNLQ                   
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVHH---GFEDGER 120
                W+LTN+GI+FLRTYLNLPS+++PATLKK AKP GRPFG PPG        E G+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120

Query: 121 -RFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGRAA 141
            RFGD DGYR G R  GGEF G+KGGAPADY+P F G G   GFGR A
Sbjct: 121 PRFGDRDGYRAGPRA-GGEFGGEKGGAPADYQPSFQGSG--RGFGRGA 165

[Close]

BLAST of Tan0006806 vs. ExPASy Swiss-Prot
Match: Q9FFS8 (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.4e-41
Identity = 105/171 (61.40%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDG-PNLQ------------------ 60
           MIISE NRREISKYL +EGV +AKKD+NL +HP I+  PNLQ                  
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61  ------WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFG----RPPGVHHGFEDG 120
                 W+LTN+GIDFLRTYLNLPSEI+PATLKKQ KP GRPFG    RP G   G  DG
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRG--DG 120

Query: 121 ERRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRP-FFGGPGG-RPGFGRAA 141
           ERRFGD DGYRGG +  GGE+ GDK GAPADY+P F GG GG R GFGR A
Sbjct: 121 ERRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGA 167

[Close]

BLAST of Tan0006806 vs. NCBI nr
Match: XP_004146529.1 (40S ribosomal protein S10-1 [Cucumis sativus] >KGN53350.1 hypothetical protein Csa_014962 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 129/182 (70.88%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGPGGEF GDKGGAPADYRP FGGPGGRPGFGR        AA  SN
Sbjct: 121 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSN 180

[Close]

BLAST of Tan0006806 vs. NCBI nr
Match: XP_008452010.1 (PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 129/182 (70.88%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGPGGEF GDKGGAPADYRP FGGPGGRPGFGR        AA  SN
Sbjct: 121 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSN 180

[Close]

BLAST of Tan0006806 vs. NCBI nr
Match: XP_022985005.1 (40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_022985006.1 40S ribosomal protein S10-1-like [Cucurbita maxima])

HSP 1 Score: 234.2 bits (596), Expect = 7.2e-58
Identity = 129/182 (70.88%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGP GEF GDKGGAPADYRP FGGPGGRPGFGR        AAA SN
Sbjct: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSN 180

[Close]

BLAST of Tan0006806 vs. NCBI nr
Match: TYK16623.1 (40S ribosomal protein S10-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 128/182 (70.33%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           +IISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 24  VIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 83

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 84  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 143

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGPGGEF GDKGGAPADYRP FGGPGGRPGFGR        AA  SN
Sbjct: 144 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSN 203

[Close]

BLAST of Tan0006806 vs. NCBI nr
Match: XP_022982956.1 (40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_023521589.1 40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >XP_023528948.1 40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.6 bits (592), Expect = 2.1e-57
Identity = 128/182 (70.33%), Postives = 130/182 (71.43%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGP GEF GDKGGAPADYRP FGGPGGRPGFGR        A A SN
Sbjct: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180

[Close]

BLAST of Tan0006806 vs. ExPASy TrEMBL
Match: A0A0A0KUQ3 (S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.7e-58
Identity = 129/182 (70.88%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGPGGEF GDKGGAPADYRP FGGPGGRPGFGR        AA  SN
Sbjct: 121 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSN 180

[Close]

BLAST of Tan0006806 vs. ExPASy TrEMBL
Match: A0A1S3BST3 (40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.7e-58
Identity = 129/182 (70.88%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGPGGEF GDKGGAPADYRP FGGPGGRPGFGR        AA  SN
Sbjct: 121 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSN 180

[Close]

BLAST of Tan0006806 vs. ExPASy TrEMBL
Match: A0A6J1JA51 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111483100 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.5e-58
Identity = 129/182 (70.88%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGP GEF GDKGGAPADYRP FGGPGGRPGFGR        AAA SN
Sbjct: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSN 180

[Close]

BLAST of Tan0006806 vs. ExPASy TrEMBL
Match: A0A5D3CXK7 (40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004510 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.8e-58
Identity = 128/182 (70.33%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           +IISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 24  VIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 83

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 84  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 143

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGPGGEF GDKGGAPADYRP FGGPGGRPGFGR        AA  SN
Sbjct: 144 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSN 203

[Close]

BLAST of Tan0006806 vs. ExPASy TrEMBL
Match: A0A6J1J0T0 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481645 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 128/182 (70.33%), Postives = 130/182 (71.43%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISEKNRREISKYL QEGV YAKKDYNLAKHPEID PNLQ                   
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVH----HGFEDGE 120
                WYLTNDGI+FLRTYLNLPSEI+PATLKKQAKPAGRPFG PPG        FE GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGR--------AAAHSN 147
           RRFGD DGYRGG RGP GEF GDKGGAPADYRP FGGPGGRPGFGR        A A SN
Sbjct: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180

[Close]

BLAST of Tan0006806 vs. TAIR 10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-43
Identity = 98/168 (58.33%), Postives = 111/168 (66.07%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISE NRREI KYL +EGV +AKKD+NL KHP ID PNLQ                   
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVHH---GFEDGER 120
                W+LTN+GI+FLRTYLNLPS+++PATLKK AKP GRPFG PPG         DG+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120

Query: 121 -RFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGRAA 141
            RFGD DGYRGG RG       +KGGAPAD++P F G GGRPGFGR A
Sbjct: 121 PRFGDRDGYRGGPRG-----GDEKGGAPADFQPSFQGGGGRPGFGRGA 163

[Close]

BLAST of Tan0006806 vs. TAIR 10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-42
Identity = 99/168 (58.93%), Postives = 112/168 (66.67%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISE NR+EI KYL +EGV +AKKD+NLAKHP ID PNLQ                   
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVHH---GFEDGER 120
                W+LTN+GI+FLRTYLNLPS+++PATLKK AKP GRPFG PPG        E G+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120

Query: 121 -RFGDLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGRAA 141
            RFGD DGYR G R  GGEF G+KGGAPADY+P F G G   GFGR A
Sbjct: 121 PRFGDRDGYRAGPRA-GGEFGGEKGGAPADYQPSFQGSG--RGFGRGA 165

[Close]

BLAST of Tan0006806 vs. TAIR 10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 168.3 bits (425), Expect = 4.5e-42
Identity = 105/171 (61.40%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDG-PNLQ------------------ 60
           MIISE NRREISKYL +EGV +AKKD+NL +HP I+  PNLQ                  
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61  ------WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFG----RPPGVHHGFEDG 120
                 W+LTN+GIDFLRTYLNLPSEI+PATLKKQ KP GRPFG    RP G   G  DG
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRG--DG 120

Query: 121 ERRFGDLDGYRGGRRGPGGEFAGDKGGAPADYRP-FFGGPGG-RPGFGRAA 141
           ERRFGD DGYRGG +  GGE+ GDK GAPADY+P F GG GG R GFGR A
Sbjct: 121 ERRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGA 167

[Close]

BLAST of Tan0006806 vs. TAIR 10
Match: AT4G25740.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-34
Identity = 84/164 (51.22%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 1   MIISEKNRREISKYLLQEGVYYAKKDYNLAKHPEIDGPNLQ------------------- 60
           MIISE NRREI KYL +EGV +AKKD+NL KHP ID PNLQ                   
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  -----WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFGRPPGVHHGFEDGERRFG 120
                W+LTN+GI+FLRTYLNLPS+++PATLKK AKP GRPFG P               
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP--------------- 120

Query: 121 DLDGYRGGRRGPGGEFAGDKGGAPADYRPFFGGPGGRPGFGRAA 141
                RGG          +KGGAPAD++P F G GGRPGFGR A
Sbjct: 121 -----RGG---------DEKGGAPADFQPSFQGGGGRPGFGRGA 135

[Close]

BLAST of Tan0006806 vs. TAIR 10
Match: AT5G41520.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-29
Identity = 75/105 (71.43%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 42  WYLTNDGIDFLRTYLNLPSEILPATLKKQAKPAGRPFG----RPPGVHHGFEDGERRFGD 101
           W+LTN+GIDFLRTYLNLPSEI+PATLKKQ KP GRPFG    RP G   G  DGERRFGD
Sbjct: 21  WFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRG--DGERRFGD 80

Query: 102 LDGYRGGRRGPGGEFAGDKGGAPADYRP-FFGGPGG-RPGFGRAA 141
            DGYRGG +  GGE+ GDK GAPADY+P F GG GG R GFGR A
Sbjct: 81  RDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGA 121

The following BLAST results are available for this feature:

BLAST of Tan0006806 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DKK8	2.8e-44	59.88	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
P0DKK9	2.8e-44	59.88	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
Q9SW09	2.6e-42	58.33	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1	[more]
Q9LTF2	2.2e-41	58.93	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2	[more]
Q9FFS8	6.4e-41	61.40	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]

BLAST of Tan0006806 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146529.1	5.5e-58	70.88	40S ribosomal protein S10-1 [Cucumis sativus] >KGN53350.1 hypothetical protein C...	[more]
XP_008452010.1	5.5e-58	70.88	PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo]	[more]
XP_022985005.1	7.2e-58	70.88	40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_022985006.1 40S ribosoma...	[more]
TYK16623.1	1.6e-57	70.33	40S ribosomal protein S10-1-like [Cucumis melo var. makuwa]	[more]
XP_022982956.1	2.1e-57	70.33	40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_023521589.1 40S ribosoma...	[more]

BLAST of Tan0006806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUQ3	2.7e-58	70.88	S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090...	[more]
A0A1S3BST3	2.7e-58	70.88	40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV...	[more]
A0A6J1JA51	3.5e-58	70.88	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111483100 PE=...	[more]
A0A5D3CXK7	7.8e-58	70.33	40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1J0T0	1.0e-57	70.33	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481645 PE=...	[more]

BLAST of Tan0006806 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25740.1	1.8e-43	58.33	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G52650.1	1.6e-42	58.93	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	4.5e-42	61.40	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.2	1.2e-34	51.22	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.2	2.6e-29	71.43	RNA binding Plectin/S10 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 42..81 e-value: 2.0E-10 score: 42.5 coord: 1..41 e-value: 2.5E-9 score: 38.9
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 3..41 e-value: 9.8E-8 score: 32.0 coord: 42..70 e-value: 1.6E-8 score: 34.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..146
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 42..140
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 1..41
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 42..140 coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006806.1	Tan0006806.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome