Tan0006278 (gene) Snake gourd v1

Overview
NameTan0006278
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA polymerase II elongation factor
LocationLG01: 19430749 .. 19431643 (+)
RNA-Seq ExpressionTan0006278
SyntenyTan0006278
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAAATCTCGCACCAAACAAAAAACCCCCTTCAAAACCTCAACAAAATTCAATCAATCCCATTTTCCAACAAAATACCAATCTCCATTTCTTCAATCACTCATGGCTGAAACCAAAGATTCCGGTGCCCACATAGTCGAAATCCCAGTAGAACAAGAGAATCAGAATCAAAACCTTATGATCTCTGTAATCCAACAACACCCATTGAGGCAAATTTCTGAAAGCTCCGGGCATCTATTGCTCTTAAAACTCTGGCAACGAGAGGAGCATCTGTTCGGCCTCCGAATCGGGCGGCGAGAGACCAAACTGGAGTCTCTGAAGCAACAAATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCTCTGACCCTGATGTTCACTTCGTCGGATCCCAAGGTGTGCCACAACCACAAATGGTGGGTTCCGGCGGTGTCGATGGGGGCGACGTCGGGGGTGTTTGTGATGGTGGTGCAGCTGAAAGTGTGGCTGTATTGGAAGGCAGAAGGGCAGTTGCAGAGGGAGAAGAATGAAAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTGTAGTTTTAATTTGTCTAAAGAGCCTCAGAGTGGGAAGAGGATGAAGAGCTCTAGTGTTGAGATTAAATGGGGGCCTCTCACTTGGTTCTCTAGGAATTTCATTACCATTTCTCTTGTTTGCTTTTCAGGGCTTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGGTTTTAGAGGATGATGAAACAGGGGGAGCCTCTGAATTCTGAAAGCAAGTCAAAGTAGTACACAACAAGACTAGTGTTGTTGAGTGTGTTTAATTAAGAAGCAACACTGCTTGTGTGCACACTCTGTTTTCTTTTTCTTACCC

mRNA sequence

TTTAAATCTCGCACCAAACAAAAAACCCCCTTCAAAACCTCAACAAAATTCAATCAATCCCATTTTCCAACAAAATACCAATCTCCATTTCTTCAATCACTCATGGCTGAAACCAAAGATTCCGGTGCCCACATAGTCGAAATCCCAGTAGAACAAGAGAATCAGAATCAAAACCTTATGATCTCTGTAATCCAACAACACCCATTGAGGCAAATTTCTGAAAGCTCCGGGCATCTATTGCTCTTAAAACTCTGGCAACGAGAGGAGCATCTGTTCGGCCTCCGAATCGGGCGGCGAGAGACCAAACTGGAGTCTCTGAAGCAACAAATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCTCTGACCCTGATGTTCACTTCGTCGGATCCCAAGGTGTGCCACAACCACAAATGGTGGGTTCCGGCGGTGTCGATGGGGGCGACGTCGGGGGTGTTTGTGATGGTGGTGCAGCTGAAAGTGTGGCTGTATTGGAAGGCAGAAGGGCAGTTGCAGAGGGAGAAGAATGAAAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTGTAGTTTTAATTTGTCTAAAGAGCCTCAGAGTGGGAAGAGGATGAAGAGCTCTAGTGTTGAGATTAAATGGGGGCCTCTCACTTGGTTCTCTAGGAATTTCATTACCATTTCTCTTGTTTGCTTTTCAGGGCTTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGGTTTTAGAGGATGATGAAACAGGGGGAGCCTCTGAATTCTGAAAGCAAGTCAAAGTAGTACACAACAAGACTAGTGTTGTTGAGTGTGTTTAATTAAGAAGCAACACTGCTTGTGTGCACACTCTGTTTTCTTTTTCTTACCC

Coding sequence (CDS)

ATGGCTGAAACCAAAGATTCCGGTGCCCACATAGTCGAAATCCCAGTAGAACAAGAGAATCAGAATCAAAACCTTATGATCTCTGTAATCCAACAACACCCATTGAGGCAAATTTCTGAAAGCTCCGGGCATCTATTGCTCTTAAAACTCTGGCAACGAGAGGAGCATCTGTTCGGCCTCCGAATCGGGCGGCGAGAGACCAAACTGGAGTCTCTGAAGCAACAAATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCTCTGACCCTGATGTTCACTTCGTCGGATCCCAAGGTGTGCCACAACCACAAATGGTGGGTTCCGGCGGTGTCGATGGGGGCGACGTCGGGGGTGTTTGTGATGGTGGTGCAGCTGAAAGTGTGGCTGTATTGGAAGGCAGAAGGGCAGTTGCAGAGGGAGAAGAATGAAAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTGTAGTTTTAATTTGTCTAAAGAGCCTCAGAGTGGGAAGAGGATGAAGAGCTCTAGTGTTGAGATTAAATGGGGGCCTCTCACTTGGTTCTCTAGGAATTTCATTACCATTTCTCTTGTTTGCTTTTCAGGGCTTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGGTTTTAG

Protein sequence

MAETKDSGAHIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATSGVFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSSSVEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCGF
Homology
BLAST of Tan0006278 vs. NCBI nr
Match: XP_038905570.1 (uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 uncharacterized protein LOC120091553 [Benincasa hispida])

HSP 1 Score: 377.1 bits (967), Expect = 1.0e-100
Identity = 192/220 (87.27%), Postives = 202/220 (91.82%), Query Frame = 0

Query: 1   MAETKDSGAHIVEIPVEQEN--QNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLF 60
           MAETKDSGAHIVEIPVEQEN  QNQN MISVIQ HPLRQISESSGHLLLLKLWQR+EHLF
Sbjct: 1   MAETKDSGAHIVEIPVEQENHTQNQNPMISVIQHHPLRQISESSGHLLLLKLWQRDEHLF 60

Query: 61  GLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGAT 120
           GLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTL++TSSDP VC   KWWVPAV+MGAT
Sbjct: 61  GLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPNVC--KKWWVPAVAMGAT 120

Query: 121 SGVFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKS 180
           SGVFV+VVQLK+WLYWKA GQLQREK ENRALTRCVQELRMKG  FNLSKEPQ G RMKS
Sbjct: 121 SGVFVIVVQLKLWLYWKASGQLQREKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKS 180

Query: 181 SSVEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCGF 219
           SSVEIKWGPLTWFSRNFITI L+ FS +VFAASKFILC F
Sbjct: 181 SSVEIKWGPLTWFSRNFITIFLLGFSAIVFAASKFILCAF 218

BLAST of Tan0006278 vs. NCBI nr
Match: XP_008449068.1 (PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo])

HSP 1 Score: 369.4 bits (947), Expect = 2.1e-98
Identity = 187/219 (85.39%), Postives = 200/219 (91.32%), Query Frame = 0

Query: 1   MAETKDS-GAHIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFG 60
           MA+TKDS  AHIVEIPVEQEN  QNLMISVIQ HPLRQISESSGHLLLLKLWQR+EHLFG
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATS 120
           LRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTL++TSSDP VC   KWWVPAV +GATS
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVC--KKWWVPAVVIGATS 120

Query: 121 GVFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSS 180
           GVFV+VVQLK+W+YWKA GQLQREK+ENRALTRC QELRMKG  FNLSKEPQ G RMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCGF 219
           SVEIKWGPLTWFSRNFI ISL+ FS +VFAASKFILCGF
Sbjct: 181 SVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

BLAST of Tan0006278 vs. NCBI nr
Match: XP_004149573.1 (uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 uncharacterized protein LOC101219596 [Cucumis sativus] >KGN56048.1 hypothetical protein Csa_010603 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 2.8e-98
Identity = 186/219 (84.93%), Postives = 199/219 (90.87%), Query Frame = 0

Query: 1   MAETKDS-GAHIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFG 60
           MAETKDS  AHIVEIPVEQEN  QNLMISVIQ HPLRQISESSGHLLLLKLWQR+EHLFG
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATS 120
           LRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTL++TSSDP VC   KWWVPAV +GATS
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVC--KKWWVPAVVIGATS 120

Query: 121 GVFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSS 180
           GVFV+VVQLK+W+YWKA GQLQ+EK ENRALTRCVQELRMKG  FNLSKEPQ G RMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCGF 219
           SVEIKWGPLTWFSRNFITISL+ FS ++F  SKFILCGF
Sbjct: 181 SVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

BLAST of Tan0006278 vs. NCBI nr
Match: KAG7015562.1 (hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368.2 bits (944), Expect = 4.8e-98
Identity = 186/217 (85.71%), Postives = 197/217 (90.78%), Query Frame = 0

Query: 3   ETKDSG--AHIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFGL 62
           ETKDSG  AH+VEIP E    NQN+MISVI+QHPLRQISESSGHLLLLKLWQREEHLFGL
Sbjct: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATSG 122
           RIGRRETKLESLKQQIFQLCCYFFLFHALSLTL+FTSSDP VC  HKWWVP V+MGATSG
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVC--HKWWVPGVAMGATSG 123

Query: 123 VFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSSS 182
           VFV+VVQLK+WLYWKA  QLQREK+ENRALTRCVQELRMKG  FNLSKEPQ G RMKSSS
Sbjct: 124 VFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSS 183

Query: 183 VEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCG 218
           VEIKWGPLTW SRNF+TI L+CFSG+VF ASKFILCG
Sbjct: 184 VEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

BLAST of Tan0006278 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366.3 bits (939), Expect = 1.8e-97
Identity = 183/216 (84.72%), Postives = 197/216 (91.20%), Query Frame = 0

Query: 3   ETKDSG-AHIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFGLR 62
           ET+DSG AH+VEIP E    NQN+MISVI+QHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 4   ETRDSGAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 63

Query: 63  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATSGV 122
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTL+FTSSDP VC  HKWWVP V+MGATSGV
Sbjct: 64  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVC--HKWWVPGVAMGATSGV 123

Query: 123 FVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSSSV 182
           FV+VVQLK+WLYWKA  QLQREK+ENRALTRCVQELRMKG  FNLSKEPQ G RMKSSSV
Sbjct: 124 FVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSV 183

Query: 183 EIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCG 218
           EIKWGPLTW SRNF+TI L+CFSG+VF ASKFILCG
Sbjct: 184 EIKWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCG 213

BLAST of Tan0006278 vs. ExPASy TrEMBL
Match: A0A1S3BL81 (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.0e-98
Identity = 187/219 (85.39%), Postives = 200/219 (91.32%), Query Frame = 0

Query: 1   MAETKDS-GAHIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFG 60
           MA+TKDS  AHIVEIPVEQEN  QNLMISVIQ HPLRQISESSGHLLLLKLWQR+EHLFG
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATS 120
           LRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTL++TSSDP VC   KWWVPAV +GATS
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVC--KKWWVPAVVIGATS 120

Query: 121 GVFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSS 180
           GVFV+VVQLK+W+YWKA GQLQREK+ENRALTRC QELRMKG  FNLSKEPQ G RMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCGF 219
           SVEIKWGPLTWFSRNFI ISL+ FS +VFAASKFILCGF
Sbjct: 181 SVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

BLAST of Tan0006278 vs. ExPASy TrEMBL
Match: A0A0A0L2U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 186/219 (84.93%), Postives = 199/219 (90.87%), Query Frame = 0

Query: 1   MAETKDS-GAHIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFG 60
           MAETKDS  AHIVEIPVEQEN  QNLMISVIQ HPLRQISESSGHLLLLKLWQR+EHLFG
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATS 120
           LRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTL++TSSDP VC   KWWVPAV +GATS
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVC--KKWWVPAVVIGATS 120

Query: 121 GVFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSS 180
           GVFV+VVQLK+W+YWKA GQLQ+EK ENRALTRCVQELRMKG  FNLSKEPQ G RMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCGF 219
           SVEIKWGPLTWFSRNFITISL+ FS ++F  SKFILCGF
Sbjct: 181 SVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

BLAST of Tan0006278 vs. ExPASy TrEMBL
Match: A0A6J1HN07 (uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.0e-97
Identity = 186/217 (85.71%), Postives = 196/217 (90.32%), Query Frame = 0

Query: 3   ETKDSGA--HIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFGL 62
           ETKDSGA  HIVEIP E    NQN+MISVI+QHPLRQISESSGHLLLLKLWQREEHLFGL
Sbjct: 4   ETKDSGAATHIVEIPAE----NQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATSG 122
           RIGRRETKLESLKQQIFQLCCYFFLFHALSLTL+FTSSDP VC  HKWWVP V+MGATSG
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVC--HKWWVPGVAMGATSG 123

Query: 123 VFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSSS 182
           VFV+VVQLK+WLYWKA  QLQREK+ENRALTR VQELRMKG  FNLSKEPQ G RMKSSS
Sbjct: 124 VFVIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSS 183

Query: 183 VEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCG 218
           VEIKWGPLTW SRNF+TI L+CFSG+VF ASKFILCG
Sbjct: 184 VEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

BLAST of Tan0006278 vs. ExPASy TrEMBL
Match: A0A6J1EWB5 (uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC111438709 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.5e-97
Identity = 185/217 (85.25%), Postives = 196/217 (90.32%), Query Frame = 0

Query: 3   ETKDSG--AHIVEIPVEQENQNQNLMISVIQQHPLRQISESSGHLLLLKLWQREEHLFGL 62
           ETKDSG  AH+VEIP E    NQN+MISVI+QHPLRQISESSGHLLLLKLWQREEHLFGL
Sbjct: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSSDPKVCHNHKWWVPAVSMGATSG 122
           RIGRRETKLESLKQQIFQLCCYFFLFHALSLTL+FTSSDP VC  HKWWVP V+MGATSG
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVC--HKWWVPGVAMGATSG 123

Query: 123 VFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKRMKSSS 182
           VFV+VVQLK+WLYWKA  QLQREK+ENRALTRCVQELRMKG  FNLSKEPQ G RMKSSS
Sbjct: 124 VFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSS 183

Query: 183 VEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCG 218
           VEIKWGPLT  SRNF+TI L+CFSG+VF ASKFILCG
Sbjct: 184 VEIKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 214

BLAST of Tan0006278 vs. ExPASy TrEMBL
Match: A0A2P6QLA8 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.4e-71
Identity = 139/221 (62.90%), Postives = 175/221 (79.19%), Query Frame = 0

Query: 1   MAETKDSGAHIVEIPVEQENQ----NQNLMISVIQQHPLRQISESSGHLLLLKLWQREEH 60
           MAE KD   H+VEIPV++E+Q    +   +IS IQ HPL +ISES GHLLLLKLW+REE 
Sbjct: 1   MAEMKDCHHHVVEIPVDEEHQQKLSSSMTIISAIQHHPLMEISESPGHLLLLKLWRREED 60

Query: 61  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSS-DPKVCHNHKWWVPAVSM 120
           LFG RI RRET+++ ++++IFQLCC+F +FHA  LT++FTSS + +     KWW+P++  
Sbjct: 61  LFGRRIARRETRMDLIRREIFQLCCFFLIFHAFFLTILFTSSVNSEKGSCQKWWIPSILS 120

Query: 121 GATSGVFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMKGCSFNLSKEPQSGKR 180
            +TS VFV++VQ+ +W YWK  GQLQREK ENRAL RC+QELRMKG SF+LSKEPQSGKR
Sbjct: 121 VSTSVVFVVLVQVNLWRYWKVWGQLQREKIENRALVRCIQELRMKGASFDLSKEPQSGKR 180

Query: 181 MKSSSVEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILC 217
           +KSSSVEIKW P+TW S+N ITI LVCF+GLVF ASK +LC
Sbjct: 181 LKSSSVEIKWKPITWCSQNLITICLVCFAGLVFPASKLMLC 221

BLAST of Tan0006278 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 246.1 bits (627), Expect = 2.6e-65
Identity = 135/238 (56.72%), Postives = 171/238 (71.85%), Query Frame = 0

Query: 1   MAETKDSGAHIVEIPVEQEN----QNQNL---------MISVIQQHPLRQISESSGHLLL 60
           MA TKDS  H+VEIPV++E+    Q Q L         ++ VIQQHPL +ISES GHLLL
Sbjct: 1   MAGTKDS--HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLLL 60

Query: 61  LKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLMFTSS---DPKVCH 120
           LKLWQREE LF  R+  +E++LES+K++IFQLCC+F +FH    TL+++SS   D  V  
Sbjct: 61  LKLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVK 120

Query: 121 NH----KWWVPAVSMGATSGVFVMVVQLKVWLYWKAEGQLQREKNENRALTRCVQELRMK 180
           ++    KWW+P+    ATS V V +VQ K++++WK    + RE+N+NR LTRCV ELRMK
Sbjct: 121 SNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMK 180

Query: 181 GCSFNLSKEPQSGKRMKSSSVEIKWGPLTWFSRNFITISLVCFSGLVFAASKFILCGF 219
           G SF+LSKEP SGKRMKSSSVEIKW P+TWFS+  ITI L+C +GL F  SKFILCGF
Sbjct: 181 GSSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCGF 236

BLAST of Tan0006278 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-25
Identity = 70/191 (36.65%), Postives = 113/191 (59.16%), Query Frame = 0

Query: 32  QHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSL 91
           +HPL QI+++  H LLLK W +EE L   R+  +E++++S++++I QL  +FFLFH++SL
Sbjct: 17  RHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISL 76

Query: 92  TLMF-----TSSDPKVCHNHKWWVPAVSMGATSGVFVMVVQLKVWLYWKAEGQLQREKNE 151
            L+F     +SS        + W+P++    +S   +  V+ K  +    E  L+REK +
Sbjct: 77  LLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKED 136

Query: 152 NRALTRCVQELRMKGCSFNLSKEPQSGKRMKSSSVEIKWGPL-TWFSRNFITISLVCFSG 211
            + L +CV+EL+ KG  F+L KE  + +R KS  VE K  P+  W +R+F+T+     S 
Sbjct: 137 AKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSC 196

Query: 212 LVFAASKFILC 217
           LV A  + ILC
Sbjct: 197 LVLAMIRLILC 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038905570.11.0e-10087.27uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 unchara... [more]
XP_008449068.12.1e-9885.39PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 P... [more]
XP_004149573.12.8e-9884.93uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 uncharact... [more]
KAG7015562.14.8e-9885.71hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023553388.11.8e-9784.72uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A1S3BL811.0e-9885.39uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=... [more]
A0A0A0L2U71.4e-9884.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1[more]
A0A6J1HN072.0e-9785.71uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114... [more]
A0A6J1EWB57.5e-9785.25uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC1114387... [more]
A0A2P6QLA82.4e-7162.90Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G56120.12.6e-6556.72unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G12870.11.2e-2536.65unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 140..160
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 21..217
NoneNo IPR availablePANTHERPTHR33287:SF3OS03G0453550 PROTEINcoord: 21..217

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006278.1Tan0006278.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane