Tan0006051 (gene) Snake gourd v1

Overview
NameTan0006051
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG11: 9288483 .. 9288815 (-)
RNA-Seq ExpressionTan0006051
SyntenyTan0006051
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCATACCAAGTTTTTGCCATTTTGGTGGCACTCATTTCTCCAAGCTCGCCGTCGAGAGCCTCCGCCGCCGCAAGCTACGGTCACTCTTTCCCTCCACCGTCGCCACCATCAAGTAATCTCCACCGTCGAATCCTATTCAGTCACGGCAGCTCTCCTCCACCGTCACCGCCGTCAAAGGAGTCTCTCACTAAACCCCTCCGCCGTCTAAAGTCTGACCATGAAGAAAAGTGTCCCAACACATCCGGAAAAGGAGATAAACATCCAGAGCGGCAACAGGATCCTTGGCCCAAGTGCCCCGTCCCTGCATCGCCGCCACCTCCCTTCTAG

mRNA sequence

ATGGCGGCATACCAAGTTTTTGCCATTTTGGTGGCACTCATTTCTCCAAGCTCGCCGTCGAGAGCCTCCGCCGCCGCAAGCTACGGTCACTCTTTCCCTCCACCGTCGCCACCATCAAGTAATCTCCACCGTCGAATCCTATTCAGTCACGGCAGCTCTCCTCCACCGTCACCGCCGTCAAAGGAGTCTCTCACTAAACCCCTCCGCCGTCTAAAGTCTGACCATGAAGAAAAGTGTCCCAACACATCCGGAAAAGGAGATAAACATCCAGAGCGGCAACAGGATCCTTGGCCCAAGTGCCCCGTCCCTGCATCGCCGCCACCTCCCTTCTAG

Coding sequence (CDS)

ATGGCGGCATACCAAGTTTTTGCCATTTTGGTGGCACTCATTTCTCCAAGCTCGCCGTCGAGAGCCTCCGCCGCCGCAAGCTACGGTCACTCTTTCCCTCCACCGTCGCCACCATCAAGTAATCTCCACCGTCGAATCCTATTCAGTCACGGCAGCTCTCCTCCACCGTCACCGCCGTCAAAGGAGTCTCTCACTAAACCCCTCCGCCGTCTAAAGTCTGACCATGAAGAAAAGTGTCCCAACACATCCGGAAAAGGAGATAAACATCCAGAGCGGCAACAGGATCCTTGGCCCAAGTGCCCCGTCCCTGCATCGCCGCCACCTCCCTTCTAG

Protein sequence

MAAYQVFAILVALISPSSPSRASAAASYGHSFPPPSPPSSNLHRRILFSHGSSPPPSPPSKESLTKPLRRLKSDHEEKCPNTSGKGDKHPERQQDPWPKCPVPASPPPPF
Homology
BLAST of Tan0006051 vs. NCBI nr
Match: KAE8646677.1 (hypothetical protein Csa_023590, partial [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-09
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 12  ALISPSSPS-RASAAASYGHSFPPPSPPSSNLHRRILFSHG-SSPPPSPPSKESLTKPLR 71
           A  SPSS S  A+AA SYG  +PPP P      R +LF +  SS PPSP ++E   K  R
Sbjct: 1   ASFSPSSLSIAATAAPSYGIPYPPPLP------RPLLFHNDHSSLPPSPAAEEYPAKSPR 60

Query: 72  RLKSDHEEKCPNTSGKGDKHPERQQDPWPKCPVPASPPPPF 111
           R+  + ++KC      G+K  +  +DPWPKCPVP SPPPPF
Sbjct: 61  RVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 95

BLAST of Tan0006051 vs. NCBI nr
Match: KAA0054906.1 (hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22694.1 hypothetical protein E5676_scaffold1163G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 0

Query: 3   AYQVFAILVALI--SPSSPS-RASAAASYGHSFPPPSPPSSNLHRRILFSHGSSPPPSPP 62
           AY   AI +A++  SPSS S  A+A  S+G  +PPP P S   H     +  SS P SP 
Sbjct: 6   AYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLPRSLLFH-----NDHSSLPQSPA 65

Query: 63  SKESLTKPLRRLKSDHEEKCPNTSGKGDKHPERQQDPWPKCPVPASPPPPF 111
           ++E   KPL+R+  + ++KC      G+K  +  +DPWPKCPV  SPPPPF
Sbjct: 66  AEEYPAKPLQRVNGERKDKCTEAPRNGNKDAKSSKDPWPKCPVSKSPPPPF 111

BLAST of Tan0006051 vs. NCBI nr
Match: KAA0054910.1 (hypothetical protein E6C27_scaffold43052G00380 [Cucumis melo var. makuwa] >TYK22698.1 hypothetical protein E5676_scaffold1163G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 54/115 (46.96%), Postives = 67/115 (58.26%), Query Frame = 0

Query: 1   MAAYQVFAIL-VALISPSSPSRASAAASYGHSFP-PPSPPSSNLHRRIL--FSHG-SSPP 60
           MAA+ VFAIL VA+IS SSP RA A   Y +     P PP   LH+RI+  FSH  SS P
Sbjct: 1   MAAHLVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPP---LHQRIILFFSHHVSSSP 60

Query: 61  PSPPSKESLTKPLRRLKSDHEEKCPNTSGKGDKHPERQQDPWPKCPVPASPPPPF 111
            S  +  S  K LR +K++ +  C     K  K P   Q+PWP+CP+PA  PPPF
Sbjct: 61  RSWSNNWSSRKLLRHIKAERKYNCLKEPEKQYKDPANSQEPWPRCPMPAFSPPPF 112

BLAST of Tan0006051 vs. ExPASy TrEMBL
Match: A0A0A0KEF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 0

Query: 3   AYQVFAIL--VALISPSSPS-RASAAASYGHSFPPPSPPSSNLHRRILFSHG-SSPPPSP 62
           AY   AIL  VA  SPSS S  A+AA SYG  +PPP P      R +LF +  SS PPSP
Sbjct: 6   AYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLP------RPLLFHNDHSSLPPSP 65

Query: 63  PSKESLTKPLRRLKSDHEEKCPNTSGKGDKHPERQQDPWPKCPVPASPPPPF 111
            ++E   K  RR+  + ++KC      G+K  +  +DPWPKCPVP SPPPPF
Sbjct: 66  AAEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

BLAST of Tan0006051 vs. ExPASy TrEMBL
Match: A0A5D3DGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00110 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 0

Query: 3   AYQVFAILVALI--SPSSPS-RASAAASYGHSFPPPSPPSSNLHRRILFSHGSSPPPSPP 62
           AY   AI +A++  SPSS S  A+A  S+G  +PPP P S   H     +  SS P SP 
Sbjct: 6   AYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLPRSLLFH-----NDHSSLPQSPA 65

Query: 63  SKESLTKPLRRLKSDHEEKCPNTSGKGDKHPERQQDPWPKCPVPASPPPPF 111
           ++E   KPL+R+  + ++KC      G+K  +  +DPWPKCPV  SPPPPF
Sbjct: 66  AEEYPAKPLQRVNGERKDKCTEAPRNGNKDAKSSKDPWPKCPVSKSPPPPF 111

BLAST of Tan0006051 vs. ExPASy TrEMBL
Match: A0A0A0KCN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058710 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 53/113 (46.90%), Postives = 63/113 (55.75%), Query Frame = 0

Query: 1   MAAYQVFAIL-VALISPSSPSRASAAASYGHSFPPPSPPSSNLHRRIL--FSHGSSPPPS 60
           MAA+ VFAIL VA+ISP+SP RASA   Y +     S P   LH  I+  FSH  SP P 
Sbjct: 1   MAAHFVFAILVVAVISPTSPWRASADERYDYLL--SSSPLLPLHHPIILFFSHHVSPSPW 60

Query: 61  PPSKESLTKPLRRLKSDHEEKCPNTSGKGDKHPERQQDPWPKCPVPASPPPPF 111
             S  S  K LR +  + +  C     K  K P   Q PWP+CP+PA PPPPF
Sbjct: 61  SWSNRSSRKLLRHINPERKYNCLKEPEKQFKDPVSSQKPWPRCPMPAFPPPPF 111

BLAST of Tan0006051 vs. ExPASy TrEMBL
Match: A0A5A7UHY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00150 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.2e-07
Identity = 54/115 (46.96%), Postives = 67/115 (58.26%), Query Frame = 0

Query: 1   MAAYQVFAIL-VALISPSSPSRASAAASYGHSFP-PPSPPSSNLHRRIL--FSHG-SSPP 60
           MAA+ VFAIL VA+IS SSP RA A   Y +     P PP   LH+RI+  FSH  SS P
Sbjct: 1   MAAHLVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPP---LHQRIILFFSHHVSSSP 60

Query: 61  PSPPSKESLTKPLRRLKSDHEEKCPNTSGKGDKHPERQQDPWPKCPVPASPPPPF 111
            S  +  S  K LR +K++ +  C     K  K P   Q+PWP+CP+PA  PPPF
Sbjct: 61  RSWSNNWSSRKLLRHIKAERKYNCLKEPEKQYKDPANSQEPWPRCPMPAFSPPPF 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8646677.14.7e-0947.52hypothetical protein Csa_023590, partial [Cucumis sativus][more]
KAA0054906.15.2e-0843.24hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22... [more]
KAA0054910.11.3e-0646.96hypothetical protein E6C27_scaffold43052G00380 [Cucumis melo var. makuwa] >TYK22... [more]
Match NameE-valueIdentityDescription
A0A0A0KEF92.0e-1048.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1[more]
A0A5D3DGG92.5e-0843.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KCN74.3e-0846.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058710 PE=4 SV=1[more]
A0A5A7UHY56.2e-0746.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006051.1Tan0006051.1mRNA