Tan0005930 (gene) Snake gourd v1

Overview


Name	Tan0005930
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Actin cytoskeleton-regulatory complex protein
Location	LG02: 2442138 .. 2442934 (-)
RNA-Seq Expression	Tan0005930
Synteny	Tan0005930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACACACTCACATCACACACTTAAAAATAAAAAAAACCATTCAATTCCAAACAAACCCTACATCAAACCTCCCTCTATTTAACCTCCAAAATCCCAATTCCAATTCTTCAACTTCACCACAAAACACAAATTCAAAAACCCATTTTCACAAACCTCTTTAAATCAATTCAAGCTTCTCCATTTCCAAATCCCATGGCCAAAATTTGCCTCTTTTGCTTCATTCTGGCCCAGATCTTGCTGATTCAAGCAATGACTTCATTTGCCACAGAAACAGATCGCCGCCCTCTGTCGGCGGCGCCGGAGCCATCGGAGACCGGCCACGGAGATGGGTCTGAAGTGGCGGAGCCGCCCGAGATCCGGCGGCTGGGAAAGCACCACGGAGATAAGTCGGTGGCCGGTGGGGGTGTCATCATCGGCGGCCTTGTAACGGCCATTTTTGCAGCTATTTTTTGTTATATTCGGGTTACTAGAAAAAAAGATGGGGTTGATTCTGTTCGTTGATATTGATCCCAATTTCTAGTTTTTGCCTTACACAATAGATATATAAATATATTCTTTTGATTCTTAAATTTTTTGGGATGATACGTTTTGGGTTTTTTTTTTTAGTAGTTTATGAAAGTGGTCGGAGGCATTCAAACTTCTTACTTTTGGTCCCGTCAATTTTACCATTGAACTATGCTTACAAGTATAGTGTTTCACCATTTTTAGTAGAAAATTTAGATTATGTTTGATAACTATTTTGTTTTTTATTTTTAGTTTTTGAAATTTAAAATTAAAAATATTACTTATACCAATG

mRNA sequence

ACACACACTCACATCACACACTTAAAAATAAAAAAAACCATTCAATTCCAAACAAACCCTACATCAAACCTCCCTCTATTTAACCTCCAAAATCCCAATTCCAATTCTTCAACTTCACCACAAAACACAAATTCAAAAACCCATTTTCACAAACCTCTTTAAATCAATTCAAGCTTCTCCATTTCCAAATCCCATGGCCAAAATTTGCCTCTTTTGCTTCATTCTGGCCCAGATCTTGCTGATTCAAGCAATGACTTCATTTGCCACAGAAACAGATCGCCGCCCTCTGTCGGCGGCGCCGGAGCCATCGGAGACCGGCCACGGAGATGGGTCTGAAGTGGCGGAGCCGCCCGAGATCCGGCGGCTGGGAAAGCACCACGGAGATAAGTCGGTGGCCGGTGGGGGTGTCATCATCGGCGGCCTTGTAACGGCCATTTTTGCAGCTATTTTTTGTTATATTCGGGTTACTAGAAAAAAAGATGGGGTTGATTCTGTTCGTTGATATTGATCCCAATTTCTAGTTTTTGCCTTACACAATAGATATATAAATATATTCTTTTGATTCTTAAATTTTTTGGGATGATACGTTTTGGGTTTTTTTTTTTAGTAGTTTATGAAAGTGGTCGGAGGCATTCAAACTTCTTACTTTTGGTCCCGTCAATTTTACCATTGAACTATGCTTACAAGTATAGTGTTTCACCATTTTTAGTAGAAAATTTAGATTATGTTTGATAACTATTTTGTTTTTTATTTTTAGTTTTTGAAATTTAAAATTAAAAATATTACTTATACCAATG

Coding sequence (CDS)

ATGGCCAAAATTTGCCTCTTTTGCTTCATTCTGGCCCAGATCTTGCTGATTCAAGCAATGACTTCATTTGCCACAGAAACAGATCGCCGCCCTCTGTCGGCGGCGCCGGAGCCATCGGAGACCGGCCACGGAGATGGGTCTGAAGTGGCGGAGCCGCCCGAGATCCGGCGGCTGGGAAAGCACCACGGAGATAAGTCGGTGGCCGGTGGGGGTGTCATCATCGGCGGCCTTGTAACGGCCATTTTTGCAGCTATTTTTTGTTATATTCGGGTTACTAGAAAAAAAGATGGGGTTGATTCTGTTCGTTGA

Protein sequence

MAKICLFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLGKHHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKDGVDSVR

Homology

[Close]

BLAST of Tan0005930 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-34
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MAKIC-LFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLG 60
           MAK C LFC I+A+ILLIQAMTS AT TD  PLSAAPEP+E G  +GS+VAE PEIRRLG
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTD-LPLSAAPEPAEKGTREGSDVAEAPEIRRLG 60

Query: 61  KHHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKDGVDSV 102
           KHHGDKSVAGGGVIIGGLVTAIFAA+FCYIRVTRK+DGVDSV
Sbjct: 61  KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 101

[Close]

BLAST of Tan0005930 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 1   MAKICLFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLGK 60
           MAKI L C ILAQILLIQAM S AT T    +SAAPEPSET + +G  +AE PEIRRLGK
Sbjct: 1   MAKISLLCLILAQILLIQAMASTATTTTSH-VSAAPEPSETDNVEGPGLAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKDGVDSV 102
           HH DKSVAGGGVIIGGLVTA+FAA+FCYIRVTRK+DGVDSV
Sbjct: 61  HHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSV 100

[Close]

BLAST of Tan0005930 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-29
Identity = 77/101 (76.24%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MAKICLFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLGK 60
           MAKI L   ILAQILLIQAM S AT T    +SAAPEPSET + +G  +AE PEIRRLGK
Sbjct: 1   MAKISLLSLILAQILLIQAMASTATTTTSH-VSAAPEPSETDNVEGPGLAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKDGVDSV 102
           HH DKSVAGGGVIIGGLVTA+FAA+FCYIRVTRK+DGVDSV
Sbjct: 61  HHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSV 100

[Close]

BLAST of Tan0005930 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 7.4e-25
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAKIC-LFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLG 60
          MAKIC LFC I+ +I LIQA+T+    T   PLS APE SE G  +GSEVAE PEIRRLG
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHGDKSVAGGGVIIGGLVTAIFAAIFCYIR 91
          KHHGDKS+AGGGVIIGGLVTA+FAA+FCYIR
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of Tan0005930 vs. NCBI nr
Match: KAE8075791.1 (hypothetical protein FH972_014479 [Carpinus fangiana])

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-18
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 1   MAKICLFCFILAQILLIQAMTSFATETDR------------------RPLSAAPEPSETG 60
           M ++ L CFIL +IL++QAM + +  +++                  +P+S+A E S  G
Sbjct: 1   MGRLGLVCFILVEILVVQAMVAKSEASEQNPSGIKVGTLGVVSRIADQPVSSAAESSSEG 60

Query: 61  HGDGSEVAEPPEIRRLGKHHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKD 97
            GD      P  IRRLGKHH DKSVAGGGVIIGGLVT +FAA+FCYIRVTR++D
Sbjct: 61  EGDSKLAEAPTMIRRLGKHHSDKSVAGGGVIIGGLVTVVFAAVFCYIRVTRRRD 114

[Close]

BLAST of Tan0005930 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MAKIC-LFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLG 60
           MAK C LFC I+A+ILLIQAMTS AT TD  PLSAAPEP+E G  +GS+VAE PEIRRLG
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTD-LPLSAAPEPAEKGTREGSDVAEAPEIRRLG 60

Query: 61  KHHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKDGVDSV 102
           KHHGDKSVAGGGVIIGGLVTAIFAA+FCYIRVTRK+DGVDSV
Sbjct: 61  KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 101

[Close]

BLAST of Tan0005930 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 76/102 (74.51%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   MAKIC-LFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLG 60
           MAKIC LFC I+ +I LIQA+T+    T   PLS APE SE G  +GSEVAE PEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKDGVDSV 102
           KHHGDKS+AGGGVIIGGLVTA+FAA+FCYIRVTRK+DGVDSV
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSV 102

[Close]

BLAST of Tan0005930 vs. ExPASy TrEMBL
Match: A0A5N6RDG0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014479 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 1   MAKICLFCFILAQILLIQAMTSFATETDR------------------RPLSAAPEPSETG 60
           M ++ L CFIL +IL++QAM + +  +++                  +P+S+A E S  G
Sbjct: 1   MGRLGLVCFILVEILVVQAMVAKSEASEQNPSGIKVGTLGVVSRIADQPVSSAAESSSEG 60

Query: 61  HGDGSEVAEPPEIRRLGKHHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKD 97
            GD      P  IRRLGKHH DKSVAGGGVIIGGLVT +FAA+FCYIRVTR++D
Sbjct: 61  EGDSKLAEAPTMIRRLGKHHSDKSVAGGGVIIGGLVTVVFAAVFCYIRVTRRRD 114

[Close]

BLAST of Tan0005930 vs. ExPASy TrEMBL
Match: A0A067KB75 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13835 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.5e-18
Identity = 60/100 (60.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 3   KICLFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLGKHH 62
           ++ + C ILA IL++QA    A E++++  S A +P  + H    E AE PEIRRLGKHH
Sbjct: 5   RLVISCLILAGILIVQAT---ADESEKKSPSVADQPVASSH--EWEEAEAPEIRRLGKHH 64

Query: 63  -GDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKDGVDSV 102
             DKSVAGGGVIIGGLVTAIFAA+FCYIRVTRKK   D V
Sbjct: 65  SSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKKGSDDLV 99

[Close]

BLAST of Tan0005930 vs. ExPASy TrEMBL
Match: A0A7N2R9A0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.2e-18
Identity = 64/121 (52.89%), Postives = 75/121 (61.98%), Query Frame = 0


Query: 1   MAKICLFCF--ILAQILLIQAMTSFATETDRRP-----------------LSAAPEPSET 60
           M  + LFCF  ILA+IL++QAM   +  ++  P                 L+  P  S  
Sbjct: 1   MGSLGLFCFMVILAEILVVQAMAGKSEGSEPNPFGLKAQNKVGTLRVVARLADQPVSSVA 60

Query: 61  GHGDG----SEVAEPPEIRRLGKHHGDKSVAGGGVIIGGLVTAIFAAIFCYIRVTRKKDG 99
           G  +G    S VAE PEIRRLGKHH DKSVAGGGVIIGGLVTAIFAA+FCYIRVTRK+  
Sbjct: 61  GSPEGNKEYSNVAEAPEIRRLGKHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRAD 120

[Close]

BLAST of Tan0005930 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-10
Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 2  AKICLFCFILAQILLIQAMTSFATETDRRPLSAAPEPSETGHGDGSEVAEPPEIRRLGKH 61
          AK  + CF+L  +  + A +S A     R L     P E    +  EV+   E  R G H
Sbjct: 3  AKHIVLCFLLTYVFSMAAASSEAEPPATRKLGRHEWPGE--EAEAPEVSHLEETVRRGHH 62

Query: 62 HG--DKSVAGGGVIIGGLVTAIFAAIFCYIRVTRK 95
          H   ++SVAGGGVI+GGL T     +FCYIR TRK
Sbjct: 63 HSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of Tan0005930 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031619.1	3.0e-34	82.35	hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070...	[more]
KAG6572323.1	2.6e-30	77.23	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011935.1	3.8e-29	76.24	hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8645753.1	7.4e-25	72.53	hypothetical protein Csa_020263 [Cucumis sativus]	[more]
KAE8075791.1	2.3e-18	49.12	hypothetical protein FH972_014479 [Carpinus fangiana]	[more]

BLAST of Tan0005930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C590	1.4e-34	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K3N0	1.9e-31	74.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A5N6RDG0	1.1e-18	49.12	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014479 PE=4 SV=1	[more]
A0A067KB75	5.5e-18	60.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13835 PE=4 SV=1	[more]
A0A7N2R9A0	7.2e-18	52.89	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Tan0005930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	7.1e-10	41.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..66
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 1..100
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005930.1	Tan0005930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane