Tan0005698 (gene) Snake gourd v1

Overview


Name	Tan0005698
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	LG05: 58017645 .. 58018541 (-)
RNA-Seq Expression	Tan0005698
Synteny	Tan0005698

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTCTTTCGCTAAAAGAGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAAGGAAAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACGTGAGCAAAGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCCCCATTTGAGGAAGAATCTGAAATATGTGATGATGAGTATGTTGAAGAAGGTAACTCCATATCGTTGATCACAAGGAGGGTCCTTAGTATGCAAATCAAGGAAGACAAAGTTGAAGACCAAAGGGAAAACTTGTTTCACACAAGATGCCTAATTAAAGGAAGTCCATGCAGTTTGGTGATTGATAGTGGGAGTTGCACAAATGTGGTAAGTAGTTTTCTTGTAAAGAGACTTCAACTTACTACCCGTCCACATCCAAAGCCATACAAACTTCAATGGTTGACAAACAAAGGAGAACTTAAGGTAAATTCTCAAGTTCTTATTCCTTTTACTTTGGGAAGATATAAGGATGAAGTACTTTGTGATGTTTTACCTATGCATGCGGGGATATATTGTAAGGCCGACCTTGGCAATATGATAGAGAGGTCACATTTGATGGAGTGAAAAATAAGTATTCGTTTACCTTCAACGGGAAGAAATTTACTTTACATCCATTGTCTCCATATGAAGTACATTGTGATCATTTGAAATTAGAGAAGAAAAGAAAAGAGTTTGAAGAACAAGAGAGGAGAGAAGAAAGTAAGTTAAAAGAAAAGAAAAGAGTGAAAAGAAAGAGAGAAGTGAGGGGCAAAAGGTGAGTGAAAACCAAGAGAGAAAAAGAGTGATTTTGAGGAAAAAGAAAGAATGTGA

mRNA sequence

ATGTTTGTTCTTTCGCTAAAAGAGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAAGGAAAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACGTGAGCAAAGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCCCCATTTGAGGAAGAATCTGAAATATGTGATGATGAGTATGTTGAAGAAGAAAGAATGTGA

Coding sequence (CDS)

ATGTTTGTTCTTTCGCTAAAAGAGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAAGGAAAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACGTGAGCAAAGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCCCCATTTGAGGAAGAATCTGAAATATGTGATGATGAGTATGTTGAAGAAGAAAGAATGTGA

Protein sequence

MFVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVEEERM

Homology

[Close]

BLAST of Tan0005698 vs. NCBI nr
Match: KAA0025749.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 63/84 (75.00%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV++ + EAESSN+KKNEASKE KEKS+S+QCWKCKGFGH+SK+CVNK+VMVIRNG++DS
Sbjct: 78  FVVAKRMEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDS 137

Query: 62  EDECEEHDAPFEEESEICDDEYVE 86
           +DEC+EHDAP EEES+  DDEY+E
Sbjct: 138 KDECDEHDAPLEEESDAHDDEYIE 161

[Close]

BLAST of Tan0005698 vs. NCBI nr
Match: TYK06180.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 62/84 (73.81%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV++ + EAESSN+KKNEASKE KEKS+S+QCWKCKGFGH+SK+CVNK+VMVIRNG++DS
Sbjct: 78  FVVAKRMEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDS 137

Query: 62  EDECEEHDAPFEEESEICDDEYVE 86
           +DE +EHDAP EEES+  DDEY+E
Sbjct: 138 KDESDEHDAPLEEESDAHDDEYIE 161

[Close]

BLAST of Tan0005698 vs. NCBI nr
Match: TYK09767.1 (uncharacterized protein E5676_scaffold127G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 8.4e-25
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV++ K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DS
Sbjct: 227 FVVAKKVETESSNTKKVEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGVIDS 286

Query: 62  EDECEEHDAPFEEESEI-CDDEYVEE 87
           EDECEE+DA  EEE E   DDEY+EE
Sbjct: 287 EDECEENDAQLEEEYETPVDDEYIEE 312

[Close]

BLAST of Tan0005698 vs. NCBI nr
Match: TYK22420.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV + K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DS
Sbjct: 304 FVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGVIDS 363

Query: 62  EDECEEHDAPFEEESEI-CDDEYVEE 87
           EDECEE+DA  EEE E   DDEY+EE
Sbjct: 364 EDECEENDAQLEEEYETPVDDEYIEE 389

[Close]

BLAST of Tan0005698 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV + K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DS
Sbjct: 304 FVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGVIDS 363

Query: 62  EDECEEHDAPFEEESEI-CDDEYVEE 87
           EDECEE+DA  EEE E   DDEY+EE
Sbjct: 364 EDECEENDAQLEEEYETPVDDEYIEE 389

[Close]

BLAST of Tan0005698 vs. ExPASy TrEMBL
Match: A0A5A7SKE7 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00370 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.7e-28
Identity = 63/84 (75.00%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV++ + EAESSN+KKNEASKE KEKS+S+QCWKCKGFGH+SK+CVNK+VMVIRNG++DS
Sbjct: 78  FVVAKRMEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDS 137

Query: 62  EDECEEHDAPFEEESEICDDEYVE 86
           +DEC+EHDAP EEES+  DDEY+E
Sbjct: 138 KDECDEHDAPLEEESDAHDDEYIE 161

[Close]

BLAST of Tan0005698 vs. ExPASy TrEMBL
Match: A0A5D3C4C3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00340 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 62/84 (73.81%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV++ + EAESSN+KKNEASKE KEKS+S+QCWKCKGFGH+SK+CVNK+VMVIRNG++DS
Sbjct: 78  FVVAKRMEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDS 137

Query: 62  EDECEEHDAPFEEESEICDDEYVE 86
           +DE +EHDAP EEES+  DDEY+E
Sbjct: 138 KDESDEHDAPLEEESDAHDDEYIE 161

[Close]

BLAST of Tan0005698 vs. ExPASy TrEMBL
Match: A0A5D3CCP8 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00510 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV++ K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DS
Sbjct: 227 FVVAKKVETESSNTKKVEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGVIDS 286

Query: 62  EDECEEHDAPFEEESEI-CDDEYVEE 87
           EDECEE+DA  EEE E   DDEY+EE
Sbjct: 287 EDECEENDAQLEEEYETPVDDEYIEE 312

[Close]

BLAST of Tan0005698 vs. ExPASy TrEMBL
Match: A0A5A7UEI2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003620 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.9e-25
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2  FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
          FV + K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DS
Sbjct: 7  FVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGVIDS 66

Query: 62 EDECEEHDAPFEEESEI-CDDEYVEE 87
          EDECEE+DA  EEE E   DDEY+EE
Sbjct: 67 EDECEENDAQLEEEYETPVDDEYIEE 92

[Close]

BLAST of Tan0005698 vs. ExPASy TrEMBL
Match: A0A5D3C8C6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002620 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.9e-25
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2   FVLSLKEEAESSNAKKNEASKEVKEKSSSIQCWKCKGFGHVSKECVNKRVMVIRNGVVDS 61
           FV + K E ESSN KK EASKEV+EK+SSIQCWKCKGFGH+SK+C+NKRVMV+RNGV+DS
Sbjct: 280 FVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGVIDS 339

Query: 62  EDECEEHDAPFEEESEI-CDDEYVEE 87
           EDECEE+DA  EEE E   DDEY+EE
Sbjct: 340 EDECEENDAQLEEEYETPVDDEYIEE 365

The following BLAST results are available for this feature:

BLAST of Tan0005698 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005698 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025749.1	1.8e-27	75.00	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK06180.1	2.6e-26	73.81	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK09767.1	8.4e-25	74.42	uncharacterized protein E5676_scaffold127G00510 [Cucumis melo var. makuwa]	[more]
TYK22420.1	1.4e-24	74.42	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK26105.1	1.4e-24	74.42	F15O4.13 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0005698 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKE7	8.7e-28	75.00	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C4C3	1.3e-26	73.81	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CCP8	4.1e-25	74.42	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UEI2	6.9e-25	74.42	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C8C6	6.9e-25	74.42	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Tan0005698 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..27
None	No IPR available	GENE3D	4.10.60.10		coord: 7..80 e-value: 5.2E-6 score: 28.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..27
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 32..48 e-value: 0.0092 score: 23.8
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 33..46 score: 8.746164
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 26..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005698.1	Tan0005698.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding