Tan0005252 (gene) Snake gourd v1

Overview


Name	Tan0005252
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	extensin-like
Location	LG04: 18163049 .. 18163454 (-)
RNA-Seq Expression	Tan0005252
Synteny	Tan0005252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATACAAAGGATCAAAGAACAGCATGAATTTTAAAGCTCATCTTTGCCTTTTTCTCTTGCTCTTGCTCGCCCTTGTCAGCTCAGCTCGGATCACGCCCCATTCAGGTACACAACTCGTTACCAATTCAAAGAGTCTAAATTTATGTAGCTTGTGCACGTTGAATAAAAGTTTTATATCAACTAAAATGTAGTATGTGAATCAAATATTGTATTGTAATCATTGAAGTTTCAGGAAAGCAAGCGACAATGATTGTGATAGACGACTATGCAGATCCAGGAGCTAATCCAAGACATGATCCAAGCCAACCGCCACCGCCACCAAAAGTTAAGACTTTAACCGTTGTGGATGGCCACATTAGCACCAAACCCTAAACAAATTCATTTGTTAGGGGAGAACCTCTTGG

mRNA sequence

GAAATACAAAGGATCAAAGAACAGCATGAATTTTAAAGCTCATCTTTGCCTTTTTCTCTTGCTCTTGCTCGCCCTTGTCAGCTCAGCTCGGATCACGCCCCATTCAGTTTCAGGAAAGCAAGCGACAATGATTGTGATAGACGACTATGCAGATCCAGGAGCTAATCCAAGACATGATCCAAGCCAACCGCCACCGCCACCAAAAGTTAAGACTTTAACCGTTGTGGATGGCCACATTAGCACCAAACCCTAAACAAATTCATTTGTTAGGGGAGAACCTCTTGG

Coding sequence (CDS)

ATGAATTTTAAAGCTCATCTTTGCCTTTTTCTCTTGCTCTTGCTCGCCCTTGTCAGCTCAGCTCGGATCACGCCCCATTCAGTTTCAGGAAAGCAAGCGACAATGATTGTGATAGACGACTATGCAGATCCAGGAGCTAATCCAAGACATGATCCAAGCCAACCGCCACCGCCACCAAAAGTTAAGACTTTAACCGTTGTGGATGGCCACATTAGCACCAAACCCTAA

Protein sequence

MNFKAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDPSQPPPPPKVKTLTVVDGHISTKP

Homology

[Close]

BLAST of Tan0005252 vs. ExPASy Swiss-Prot
Match: Q941C7 (Protein PSY1 OS=Arabidopsis thaliana OX=3702 GN=PSY1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 27/64 (42.19%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSG--------KQATMIVIDDYADPGANPRHDP 57
          M F   L + LLL L + SS    P SVSG        +   M+ ++DY DP ANP+HDP
Sbjct: 1  MTFVVRLLVCLLLTLTITSSLARNPVSVSGGFENSGFQRSLLMVNVEDYGDPSANPKHDP 60

[Close]

BLAST of Tan0005252 vs. ExPASy Swiss-Prot
Match: Q8LE92 (Protein PSY2 OS=Arabidopsis thaliana OX=3702 GN=PSY2 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.2e-04
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSGKQAT-------MIVIDDYADPGANPRHDPS 56
          M+F   L LFL+L L LV+S+      VSG   T       M+ I+DY DP AN RHDPS
Sbjct: 1  MSFGTRLLLFLILTLPLVTSSSPNTLHVSGIVKTGTTSRFLMMTIEDYDDPSANTRHDPS 60

[Close]

BLAST of Tan0005252 vs. NCBI nr
Match: KAG6607579.1 (hypothetical protein SDJN03_00921, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 43/75 (57.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDPSQPPPPPK 60
          M FKA LCLFLLL  ALVSSAR   H  SGKQ T  V+ DY DPG  P   P  PP PP 
Sbjct: 1  MEFKARLCLFLLLSFALVSSARTISH--SGKQRTKEVMRDYDDPGRVPGWSPLYPPEPPH 60

Query: 61 VKTLTVVDGHISTKP 76
           K   V D HI+ KP
Sbjct: 61 FKVFAVYDDHINIKP 73

[Close]

BLAST of Tan0005252 vs. NCBI nr
Match: XP_022998671.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDP----SQPP 60
          M FKA LCL  LL  ALVSSA+I   SVSGKQAT IVI+DY+DPG NP   P      PP
Sbjct: 1  MEFKARLCLVFLLSFALVSSAQIMSDSVSGKQATEIVINDYSDPGKNPTLSPVVPKQFPP 60

Query: 61 PPPKVKTLTVVD 69
          PPP  K   + D
Sbjct: 61 PPPDFKAFVIND 72

[Close]

BLAST of Tan0005252 vs. NCBI nr
Match: XP_022948580.1 (extensin-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 41/72 (56.94%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDP----SQPP 60
          M FK  LCL  LL  ALVSSARI   SVSGKQAT IVI+DY+DPG NP   P      PP
Sbjct: 1  MEFKGCLCLVFLLSFALVSSARIMSDSVSGKQATKIVINDYSDPGKNPTLSPVVPKQFPP 60

Query: 61 PPPKVKTLTVVD 69
          PPP  +   + D
Sbjct: 61 PPPDFEPFAIND 72

[Close]

BLAST of Tan0005252 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 3  FKAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDPSQPP 57
          FKA L  FLLL  AL++ ARITPHS S  Q   I I+DYADPGANPRHDP+QPP
Sbjct: 4  FKARLTFFLLLSFALITLARITPHSES--QNNTITINDYADPGANPRHDPNQPP 55

[Close]

BLAST of Tan0005252 vs. NCBI nr
Match: XP_023525722.1 (extensin-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 40/72 (55.56%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDP----SQPP 60
          M FK  LCL  LL   LV+SARI   SVSGKQAT IVI+DY+DPG NP   P      PP
Sbjct: 1  MEFKGCLCLVFLLSFVLVNSARIMSDSVSGKQATEIVINDYSDPGKNPTLSPVVPKQFPP 60

Query: 61 PPPKVKTLTVVD 69
          PPP  K   + D
Sbjct: 61 PPPDFKASVMND 72

[Close]

BLAST of Tan0005252 vs. ExPASy TrEMBL
Match: A0A6J1KAU3 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111493256 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDP----SQPP 60
          M FKA LCL  LL  ALVSSA+I   SVSGKQAT IVI+DY+DPG NP   P      PP
Sbjct: 1  MEFKARLCLVFLLSFALVSSAQIMSDSVSGKQATEIVINDYSDPGKNPTLSPVVPKQFPP 60

Query: 61 PPPKVKTLTVVD 69
          PPP  K   + D
Sbjct: 61 PPPDFKAFVIND 72

[Close]

BLAST of Tan0005252 vs. ExPASy TrEMBL
Match: A0A6J1GAA0 (extensin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452213 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.7e-09
Identity = 41/72 (56.94%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDP----SQPP 60
          M FK  LCL  LL  ALVSSARI   SVSGKQAT IVI+DY+DPG NP   P      PP
Sbjct: 1  MEFKGCLCLVFLLSFALVSSARIMSDSVSGKQATKIVINDYSDPGKNPTLSPVVPKQFPP 60

Query: 61 PPPKVKTLTVVD 69
          PPP  +   + D
Sbjct: 61 PPPDFEPFAIND 72

[Close]

BLAST of Tan0005252 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 4  KAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDPSQPPPPPKVKT 63
          KA L LFLLL   LV+SARI PHS + + A M  I+DY DPGANPRHDP   PPP +   
Sbjct: 5  KARLALFLLLSFVLVTSARIIPHSENQEAAYM--INDYPDPGANPRHDPF--PPPSQQFE 64

Query: 64 LTVVDGH 71
          ++VV GH
Sbjct: 65 VSVVKGH 67

[Close]

BLAST of Tan0005252 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 3  FKAHL-CLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDPSQPPPPPKV 62
          FKA L  LFLLL  ALV+SARI PHS + + A M  I+DY DPGANPRHDP  PPPP + 
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSENQEAAYM--INDYPDPGANPRHDPF-PPPPQQF 63

Query: 63 KTLTVVDGHISTKP 76
          +   V D  I   P
Sbjct: 64 EISVVKDHDIKKNP 74

[Close]

BLAST of Tan0005252 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.2e-07
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 4  KAHLCLFLLLLLALVSSARITPHSVSGKQATMIVIDDYADPGANPRHDPSQPPPPPKVKT 63
          KA L L LLL   LV+SARI PHS + + A M  I+DY DPGANPRH+P  PPP    + 
Sbjct: 5  KARLSLLLLLSFVLVTSARIIPHSENQEVAYM--INDYPDPGANPRHNPFPPPPRHLFEI 64

Query: 64 LTVVDGHISTKP 76
            V DG I+  P
Sbjct: 65 SVVKDGDITKNP 74

[Close]

BLAST of Tan0005252 vs. TAIR 10
Match: AT5G58650.1 (plant peptide containing sulfated tyrosine 1 )

HSP 1 Score: 47.0 bits (110), Expect = 7.8e-06
Identity = 27/64 (42.19%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSG--------KQATMIVIDDYADPGANPRHDP 57
          M F   L + LLL L + SS    P SVSG        +   M+ ++DY DP ANP+HDP
Sbjct: 1  MTFVVRLLVCLLLTLTITSSLARNPVSVSGGFENSGFQRSLLMVNVEDYGDPSANPKHDP 60

[Close]

BLAST of Tan0005252 vs. TAIR 10
Match: AT3G47295.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.0e-05
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 1  MNFKAHLCLFLLLLLALVSSARITPHSVSGKQAT-------MIVIDDYADPGANPRHDPS 56
          M+F   L LFL+L L LV+S+      VSG   T       M+ I+DY DP AN RHDPS
Sbjct: 1  MSFGTRLLLFLILTLPLVTSSSPNTLHVSGIVKTGTTSRFLMMTIEDYDDPSANTRHDPS 60

[Close]

BLAST of Tan0005252 vs. TAIR 10
Match: AT2G29995.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07175.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 4.3e-04
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 7  LCLFLLLLLALVSSARIT------PHSVSGKQATMIVIDDYADPGANPRHDP 53
          LCLFL    AL+SSARI+        +V  +++ M+  +DY+DP AN RHDP
Sbjct: 11 LCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDP 62

The following BLAST results are available for this feature:

BLAST of Tan0005252 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q941C7	1.1e-04	42.19	Protein PSY1 OS=Arabidopsis thaliana OX=3702 GN=PSY1 PE=1 SV=1	[more]
Q8LE92	4.2e-04	46.77	Protein PSY2 OS=Arabidopsis thaliana OX=3702 GN=PSY2 PE=3 SV=1	[more]

BLAST of Tan0005252 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607579.1	1.4e-09	57.33	hypothetical protein SDJN03_00921, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998671.1	2.4e-09	58.33	extensin-like [Cucurbita maxima]	[more]
XP_022948580.1	1.6e-08	56.94	extensin-like isoform X1 [Cucurbita moschata]	[more]
XP_038895781.1	2.1e-08	68.52	circumsporozoite protein-like [Benincasa hispida]	[more]
XP_023525722.1	1.0e-07	55.56	extensin-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0005252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAU3	1.2e-09	58.33	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111493256 PE=4 SV=1	[more]
A0A6J1GAA0	7.7e-09	56.94	extensin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452213 PE=4 SV=1	[more]
A0A5A7SPC6	1.4e-07	58.21	Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P...	[more]
A0A5A7SMH7	3.2e-07	56.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LV67	7.2e-07	52.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]

BLAST of Tan0005252 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58650.1	7.8e-06	42.19	plant peptide containing sulfated tyrosine 1	[more]
AT3G47295.1	3.0e-05	46.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G29995.1	4.3e-04	46.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005252.1	Tan0005252.1	mRNA
Tan0005252.2	Tan0005252.2	mRNA