Tan0005118 (gene) Snake gourd v1

Overview


Name	Tan0005118
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNase H domain-containing protein
Location	LG03: 63405824 .. 63406132 (-)
RNA-Seq Expression	Tan0005118
Synteny	Tan0005118

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCAGCGTGTGATGAGTCTCAAGGGAGAACAGGTGTTGGAGTTGTTGTTCGAGATCCAAATCGACGCTTGTTGGTGGCTATGTCTAATGTCCATGACACTTTCATCAATCCGGCTTGCTCAGAAGCATTGGTCATTCTTGATGGATTGCAGCTTGCTGAGCGCTTAGGATACTCTAAGCTACACATTTTCTCGGACTCATTAACCAATGTGGCTATGATCAATGGGATGCTACGAACGATTGCTCAAATCCACAACTACATCAATGATGTTTTATTTCTACGTCGAAAGTTTGAGTCATACTAA

mRNA sequence

ATGGATGCAGCGTGTGATGAGTCTCAAGGGAGAACAGGTGTTGGAGTTGTTGTTCGAGATCCAAATCGACGCTTGTTGGTGGCTATGTCTAATGTCCATGACACTTTCATCAATCCGGCTTGCTCAGAAGCATTGGTCATTCTTGATGGATTGCAGCTTGCTGAGCGCTTAGGATACTCTAAGCTACACATTTTCTCGGACTCATTAACCAATGTGGCTATGATCAATGGGATGCTACGAACGATTGCTCAAATCCACAACTACATCAATGATGTTTTATTTCTACGTCGAAAGTTTGAGTCATACTAA

Coding sequence (CDS)

ATGGATGCAGCGTGTGATGAGTCTCAAGGGAGAACAGGTGTTGGAGTTGTTGTTCGAGATCCAAATCGACGCTTGTTGGTGGCTATGTCTAATGTCCATGACACTTTCATCAATCCGGCTTGCTCAGAAGCATTGGTCATTCTTGATGGATTGCAGCTTGCTGAGCGCTTAGGATACTCTAAGCTACACATTTTCTCGGACTCATTAACCAATGTGGCTATGATCAATGGGATGCTACGAACGATTGCTCAAATCCACAACTACATCAATGATGTTTTATTTCTACGTCGAAAGTTTGAGTCATACTAA

Protein sequence

MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFESY

Homology

[Close]

BLAST of Tan0005118 vs. NCBI nr
Match: XP_021719894.1 (uncharacterized protein LOC110687544 [Chenopodium quinoa])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 2   DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSK 61
           DA C  + G  G+G V+RD N  LL   +  H T  +P C+EAL +   LQLA RLG+S+
Sbjct: 139 DAHC-PAGGLAGLGTVIRDANGSLLTVATRTHTT--SPECAEALAVRYALQLARRLGFSR 198

Query: 62  LHIFSDSLTNVAMINGMLRTIAQIHNYINDV 93
           + + SD++  V  ++      A IH   +D+
Sbjct: 199 VWVESDAINVVKAVHIDDGGKAPIHLIFDDI 226

[Close]

BLAST of Tan0005118 vs. NCBI nr
Match: XP_018844582.1 (uncharacterized protein LOC109008805 [Juglans regia] >KAF5444777.1 hypothetical protein F2P56_033882 [Juglans regia])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 1   MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYS 60
           +D A  + Q R GVG+++RD N  +L+  S       +PA  E L +L GLQL   LG  
Sbjct: 5   VDGAVFQDQHRAGVGIILRDANGEVLLTASKKEKEVNDPAEVELLAMLRGLQLCPPLGIE 64

Query: 61  KLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKF 100
           +L + SDSL  V  +  +    + + N + ++  L ++F
Sbjct: 65  ELIMESDSLLMVTQVQAVEEYWSLLGNIVKEIKLLMKRF 103

[Close]

BLAST of Tan0005118 vs. NCBI nr
Match: XP_018831463.1 (uncharacterized protein LOC108999120 [Juglans regia] >KAF5476857.1 hypothetical protein F2P56_003549 [Juglans regia])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 11  RTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLT 70
           + G+GVV+RD   +L++A S + +   NP+  E L +L GLQL   LG+SKL + SD + 
Sbjct: 147 KAGMGVVLRDDKGKLVMAASKIENAVENPSTIELLALLRGLQLIVHLGFSKLDVESDCIL 206

Query: 71  NVAMINGMLRTIAQIHNYINDVLFLRRKFE 101
            V  +N    +++   + I +   L + F+
Sbjct: 207 QVQELNNKQDSLSADDSLIMEAKSLLKHFQ 236

[Close]

BLAST of Tan0005118 vs. NCBI nr
Match: XP_012472296.1 (PREDICTED: uncharacterized protein LOC105789469 [Gossypium raimondii])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 28/99 (28.28%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 2   DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSK 61
           DAA D  + R+  G++VR+ NR +L + + +H   ++P  +EA   L  ++L  RLG +K
Sbjct: 47  DAAYDRLEFRSASGIIVRNENREILASQAVIHSIIVDPFTAEAYARLQAIKLGIRLGVNK 106

Query: 62  LHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE 101
           L +  DS T +          + I   I D+  ++ + +
Sbjct: 107 LTVLGDSKTVIKKCQSFFTDKSVIGAIITDIQSIKNRLQ 145

[Close]

BLAST of Tan0005118 vs. NCBI nr
Match: XP_038682992.1 (uncharacterized protein LOC119983379 [Tripterygium wilfordii])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 34/101 (33.66%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 2    DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSK 61
            DAA      RTG+G+V RD    +L + + V  T ++P  +EAL  L  ++L   LG+++
Sbjct: 1078 DAAIHTQTNRTGMGIVFRDEYGDVLASCALVRSTILDPTLAEALACLQAVKLPSELGFTE 1137

Query: 62   LHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFESY 103
            L    DS+  V  ING + T A     I ++  L   F S+
Sbjct: 1138 LIFEGDSVVIVNAINGSVPTRAVWSKVIEEIKRLLGYFMSW 1178

[Close]

BLAST of Tan0005118 vs. ExPASy TrEMBL
Match: A0A1U8P8B0 (uncharacterized protein LOC107956232 OS=Gossypium hirsutum OX=3635 GN=LOC107956232 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 30/99 (30.30%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 2   DAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSK 61
           DAA D  + R+  G++VR+ NR +L + + +H    +P  +EA   L  ++L  RLG +K
Sbjct: 87  DAAYDRLEFRSASGIIVRNENREILASQAVIHSNIADPFTAEAYAGLQAIKLGIRLGVNK 146

Query: 62  LHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKFE 101
           L +  DS T +          + I   I D+  L+ +F+
Sbjct: 147 LTVLGDSKTVIKKCQSFFTDKSVIGAIITDIQSLKNRFQ 185

[Close]

BLAST of Tan0005118 vs. ExPASy TrEMBL
Match: A0A2I4GL10 (uncharacterized protein LOC109008805 OS=Juglans regia OX=51240 GN=LOC109008805 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.3e-05
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 1   MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYS 60
           +D A  + Q R GVG+++RD N  +L+  S       +PA  E L +L GLQL   LG  
Sbjct: 5   VDGAVFQDQHRAGVGIILRDANGEVLLTASKKEKEVNDPAEVELLAMLRGLQLCPPLGIE 64

Query: 61  KLHIFSDSLTNVAMINGMLRTIAQIHNYINDVLFLRRKF 100
           +L + SDSL  V  +  +    + + N + ++  L ++F
Sbjct: 65  ELIMESDSLLMVTQVQAVEEYWSLLGNIVKEIKLLMKRF 103

[Close]

BLAST of Tan0005118 vs. ExPASy TrEMBL
Match: A0A2I4FII8 (uncharacterized protein LOC108999120 OS=Juglans regia OX=51240 GN=LOC108999120 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.0e-05
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 11  RTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYSKLHIFSDSLT 70
           + G+GVV+RD   +L++A S + +   NP+  E L +L GLQL   LG+SKL + SD + 
Sbjct: 147 KAGMGVVLRDDKGKLVMAASKIENAVENPSTIELLALLRGLQLIVHLGFSKLDVESDCIL 206

Query: 71  NVAMINGMLRTIAQIHNYINDVLFLRRKFE 101
            V  +N    +++   + I +   L + F+
Sbjct: 207 QVQELNNKQDSLSADDSLIMEAKSLLKHFQ 236

[Close]

BLAST of Tan0005118 vs. ExPASy TrEMBL
Match: A0A2P6RG15 (RNase H domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0490691 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.1e-05
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYS 60
          MDAA D      G+ +V+RDP+ R++V  S+  D   +P  +EAL I  GL  A  L  S
Sbjct: 1  MDAAWDADLNSCGLTIVIRDPS-RVIVGGSSRFDFTSSPLATEALAIELGLNAASSLSLS 60

Query: 61 KLHIFSDSLTNVAMINGMLRTI 83
           LH+ SDSLT ++ +   L T+
Sbjct: 61 SLHLESDSLTLISALQNPLSTV 81

[Close]

BLAST of Tan0005118 vs. ExPASy TrEMBL
Match: A0A5C7HDG5 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020286 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1  MDAACDESQGRTGVGVVVRDPNRRLLVAMSNVHDTFINPACSEALVILDGLQLAERLGYS 60
          +DAA D+ +GR G+G+++RD N  +L + +   D F  P  +EA+ IL GL  A  +G  
Sbjct: 12 VDAAIDKDRGRVGIGLIIRDCNGEVLASCAQRIDDFCTPMVAEAVAILRGLMFAREVGIW 71

Query: 61 KLHIFSDSLTNVAMIN 77
             + SD+   V ++N
Sbjct: 72 PQVVESDAKAVVDLVN 87

The following BLAST results are available for this feature:

BLAST of Tan0005118 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005118 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021719894.1	1.1e-04	37.36	uncharacterized protein LOC110687544 [Chenopodium quinoa]	[more]
XP_018844582.1	1.1e-04	32.32	uncharacterized protein LOC109008805 [Juglans regia] >KAF5444777.1 hypothetical ...	[more]
XP_018831463.1	1.4e-04	33.33	uncharacterized protein LOC108999120 [Juglans regia] >KAF5476857.1 hypothetical ...	[more]
XP_012472296.1	1.9e-04	28.28	PREDICTED: uncharacterized protein LOC105789469 [Gossypium raimondii]	[more]
XP_038682992.1	1.9e-04	33.66	uncharacterized protein LOC119983379 [Tripterygium wilfordii]	[more]

BLAST of Tan0005118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1U8P8B0	3.1e-05	30.30	uncharacterized protein LOC107956232 OS=Gossypium hirsutum OX=3635 GN=LOC1079562...	[more]
A0A2I4GL10	5.3e-05	32.32	uncharacterized protein LOC109008805 OS=Juglans regia OX=51240 GN=LOC109008805 P...	[more]
A0A2I4FII8	7.0e-05	33.33	uncharacterized protein LOC108999120 OS=Juglans regia OX=51240 GN=LOC108999120 P...	[more]
A0A2P6RG15	9.1e-05	40.24	RNase H domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g04...	[more]
A0A5C7HDG5	1.6e-04	35.53	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020286 ...	[more]

BLAST of Tan0005118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..101 e-value: 4.1E-15 score: 55.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..102 e-value: 1.4E-9 score: 40.1
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 2..101 e-value: 2.14234E-12 score: 56.5536
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005118.1	Tan0005118.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity