Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCTCAATAATAGCCTTACTTAAAAGTGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATACGATTCTCGTTGTTGACGACCTTCGGTTCGTACTAACTGAGAAATGTCCTCAGAATCCTGCTCGTAATGCTCCTCGATCTGTTAAGGAGGCGTACGACCGCTGGATCAAGGCTAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTAAAGTTATGGCAAAAAAGCATGAGGGCATGGTCTCAGCTCGTGAGATAATGAGTTCACTGCAGGAAATGTTTGGACAACCGTTTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAATGTGGCTGAGATGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCTGCAACAATGCGGTGATGAATAAGATATAG
mRNA sequence
ATGTCGTCCTCAATAATAGCCTTACTTAAAAGTGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATACGATTCTCGTTGTTGACGACCTTCGGTTCGTACTAACTGAGAAATGTCCTCAGAATCCTGCTCGTAATGCTCCTCGATCTGTTAAGGAGGCGTACGACCGCTGGATCAAGGCTAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTAAAGTTATGGCAAAAAAGCATGAGGGCATGGTCTCAGCTCGTGAGATAATGAGTTCACTGCAGGAAATGTTTGGACAACCGTTTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAATGTGGCTGAGATGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCTGCAACAATGCGGTGATGAATAAGATATAG
Coding sequence (CDS)
ATGTCGTCCTCAATAATAGCCTTACTTAAAAGTGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATACGATTCTCGTTGTTGACGACCTTCGGTTCGTACTAACTGAGAAATGTCCTCAGAATCCTGCTCGTAATGCTCCTCGATCTGTTAAGGAGGCGTACGACCGCTGGATCAAGGCTAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTAAAGTTATGGCAAAAAAGCATGAGGGCATGGTCTCAGCTCGTGAGATAATGAGTTCACTGCAGGAAATGTTTGGACAACCGTTTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAATGTGGCTGAGATGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCTGCAACAATGCGGTGATGAATAAGATATAG
Protein sequence
MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYDRWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI
Homology
BLAST of Tan0004991 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 257.7 bits (657), Expect = 7.4e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. NCBI nr
Match:
TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 257.7 bits (657), Expect = 7.4e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 257.7 bits (657), Expect = 7.4e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. NCBI nr
Match:
KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 257.7 bits (657), Expect = 7.4e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. NCBI nr
Match:
KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 257.7 bits (657), Expect = 7.4e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 257.7 bits (657), Expect = 3.6e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. ExPASy TrEMBL
Match:
A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)
HSP 1 Score: 257.7 bits (657), Expect = 3.6e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. ExPASy TrEMBL
Match:
A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)
HSP 1 Score: 257.7 bits (657), Expect = 3.6e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. ExPASy TrEMBL
Match:
A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)
HSP 1 Score: 257.7 bits (657), Expect = 3.6e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
BLAST of Tan0004991 vs. ExPASy TrEMBL
Match:
A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)
HSP 1 Score: 257.7 bits (657), Expect = 3.6e-65
Identity = 122/178 (68.54%), Postives = 156/178 (87.64%), Query Frame = 0
Query: 1 MSSSIIALLKSDRLTGENFTTWKSNLNTILVVDDLRFVLTEKCPQNPARNAPRSVKEAYD 60
M+S+ + +L +D+L G N+ +WK+ +NT+L++DDLRFVL E+CPQ PA NA R+V+E Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANDKAKVYILASVSKVMAKKHEGMVSAREIMSSLQEMFGQPFGQIRHESLKYVYNS 120
RW KAN+KA+ YILAS+S+V+AKKHE M++AREIM SLQEMFGQ QI+H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFCNNAVMNKI 179
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQF +NAVMNKI
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKI 178
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0044955.1 | 7.4e-65 | 68.54 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| TYK14550.1 | 7.4e-65 | 68.54 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0054490.1 | 7.4e-65 | 68.54 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0051952.1 | 7.4e-65 | 68.54 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0035879.1 | 7.4e-65 | 68.54 | gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SMH8 | 3.6e-65 | 68.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
| A0A5D3CPJ6 | 3.6e-65 | 68.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... | [more] |
| A0A5A7TU93 | 3.6e-65 | 68.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... | [more] |
| A0A5A7TWB9 | 3.6e-65 | 68.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... | [more] |
| A0A5D3CSZ6 | 3.6e-65 | 68.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
