Tan0004954 (gene) Snake gourd v1

Overview


Name	Tan0004954
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	F-box protein SNE-like
Location	LG02: 4386626 .. 4387363 (-)
RNA-Seq Expression	Tan0004954
Synteny	Tan0004954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAATCCATTGAAGCCCCTTTTTTAAAAACCCATTAACTCAATAAATTCCTCTCTCAATCATCAAGAACAAGAAGAAGAACAAGAAGAAGCTTAATCATGCAGCGAAATGCACAAGAAAATTACGGAGAGAAGACGATGAACAACAAAAAGAAAATCAAATTCGCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTCGACGGTCCCTCCCTCTGCGCCGCCGCTTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGCTTTCGCCACGTCTCCTCGCCGCCACCGTCCTCCGTCCACCCTGTCGTCGTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCTGTTCTCAGCCGATTAAATCGCTCCGATTTGGTCCGCCGCGTTTGGACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCCTGTTCTCCGTTGATTATTACGAGAGAAACGGTTGCCTCGGCGGCGATGCGGCGGCGGTGGCAGTGGCTCCGTCGTTGAGATTCCTCTGCAAACCGGTGAACGTATAATTTGTTTGTTTCTTTGTTTCTTTGTTCTCATCCTTTTTTCGTTCCATTCTGAAACGTTTTTGAATTGATTCGTCTCATTGGACAATAACCGTGAGGGAATTCACTTGTTTTTCTCTGGATTTATTTCAATTTTTTATTAAATAAATTAATATT

mRNA sequence

GTCAAATCCATTGAAGCCCCTTTTTTAAAAACCCATTAACTCAATAAATTCCTCTCTCAATCATCAAGAACAAGAAGAAGAACAAGAAGAAGCTTAATCATGCAGCGAAATGCACAAGAAAATTACGGAGAGAAGACGATGAACAACAAAAAGAAAATCAAATTCGCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTCGACGGTCCCTCCCTCTGCGCCGCCGCTTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGCTTTCGCCACGTCTCCTCGCCGCCACCGTCCTCCGTCCACCCTGTCGTCGTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCTGTTCTCAGCCGATTAAATCGCTCCGATTTGGTCCGCCGCGTTTGGACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCCTGTTCTCCGTTGATTATTACGAGAGAAACGGTTGCCTCGGCGGCGATGCGGCGGCGGTGGCAGTGGCTCCGTCGTTGAGATTCCTCTGCAAACCGGTGAACGTATAATTTGTTTGTTTCTTTGTTTCTTTGTTCTCATCCTTTTTTCGTTCCATTCTGAAACGTTTTTGAATTGATTCGTCTCATTGGACAATAACCGTGAGGGAATTCACTTGTTTTTCTCTGGATTTATTTCAATTTTTTATTAAATAAATTAATATT

Coding sequence (CDS)

ATGCAGCGAAATGCACAAGAAAATTACGGAGAGAAGACGATGAACAACAAAAAGAAAATCAAATTCGCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTCGACGGTCCCTCCCTCTGCGCCGCCGCTTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGCTTTCGCCACGTCTCCTCGCCGCCACCGTCCTCCGTCCACCCTGTCGTCGTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCTGTTCTCAGCCGATTAAATCGCTCCGATTTGGTCCGCCGCGTTTGGACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCCTGTTCTCCGTTGATTATTACGAGAGAAACGGTTGCCTCGGCGGCGATGCGGCGGCGGTGGCAGTGGCTCCGTCGTTGAGATTCCTCTGCAAACCGGTGAACGTATAA

Protein sequence

MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

Homology

[Close]

BLAST of Tan0004954 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36
Identity = 89/157 (56.69%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 11  EKTMNNKKKIK----FAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEH 70
           EK+ N ++++     F+INDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 71  LCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLS 130
           LCFR VS  P  S+  VV ALGGY+ LY LC+RPVL+R     L + +WT +DQ+QLSLS
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWT-RDQLQLSLS 130

Query: 131 LFSVDYYER--NGCLGGDAAAVAVAPSLRFLCKPVNV 162
           L+ V YYER   G   GDA       SL FL KPVNV
Sbjct: 131 LYCVHYYERLYVGAWLGDAP----PSSLIFLRKPVNV 156

[Close]

BLAST of Tan0004954 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 29  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SVHPVVVA 88
           D++ E+L+R +  +L AAACV R W  LA  D+ LWE  C R  ++   S   +  VV++
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLA-EDERLWEAACVREWANLGFSERQLRAVVLS 138

Query: 89  LGGYKRLYMLCLRPVLSR---LNRSDLVRR--VWTLQDQVQLSLSLFSVDYYERNGC 139
           LGG++RL+ + +RP+  R   + R    R+  V   +DQVQLSLSLFS+ +++   C
Sbjct: 139 LGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQLSLSLFSIGFFQNMPC 194

[Close]

BLAST of Tan0004954 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 40/109 (36.70%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 29  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVHPVVVA 88
           +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +  VV+A
Sbjct: 38  NLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DERLWELICTRHWTNIGCGQNQLRSVVLA 97

Query: 89  LGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLSLFSVDYYER 136
           LGG++RL+ L L P LS+ N      R    +D+++L+LSL S+ YYE+
Sbjct: 98  LGGFRRLHSLYLWP-LSKPN-----PRARFGKDELKLTLSLLSIRYYEK 139

[Close]

BLAST of Tan0004954 vs. NCBI nr
Match: XP_022952371.1 (F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 5.5e-67
Identity = 137/162 (84.57%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60
           MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARND
Sbjct: 1   MQPNAPQG-DTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60

Query: 61  DSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQ 120
           DSLWEHLCFRHVSSPP SSV P+++ALGGYKRLYMLCLRPVLSRLNRS LV RV TLQDQ
Sbjct: 61  DSLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQ 120

Query: 121 VQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV 162
           VQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Sbjct: 121 VQRLSLSLFCVDYYERNGWLGGDAA--AAAPSLRFLCKPVNV 159

[Close]

BLAST of Tan0004954 vs. NCBI nr
Match: XP_022969281.1 (F-box protein SNE-like [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66
Identity = 136/162 (83.95%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60
           MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARND
Sbjct: 1   MQPNAPQG-DTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60

Query: 61  DSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQ 120
           DSLWEHLCF HVSSPP SSV P+++ALGGYKRLYMLCLRPVLSRLNRS LV RV TLQDQ
Sbjct: 61  DSLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQ 120

Query: 121 VQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV 162
           VQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Sbjct: 121 VQRLSLSLFCVDYYERNGWLGGDAA--AAAPSLRFLCKPVNV 159

[Close]

BLAST of Tan0004954 vs. NCBI nr
Match: KAG7011864.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.2 bits (666), Expect = 6.1e-66
Identity = 136/162 (83.95%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60
           MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARND
Sbjct: 1   MQPNAPQG-DTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60

Query: 61  DSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQ 120
           DSLWEHLCFRHVSSP  SSV P+++ALGGYKRLYMLCLRPVLSRLNRS LV RV TLQDQ
Sbjct: 61  DSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQ 120

Query: 121 VQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV 162
           VQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Sbjct: 121 VQRLSLSLFCVDYYERNGWLGGDAA--AAAPSLRFLCKPVNV 159

[Close]

BLAST of Tan0004954 vs. NCBI nr
Match: KAG6572228.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.8 bits (652), Expect = 2.6e-64
Identity = 133/159 (83.65%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 1   MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60
           MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARND
Sbjct: 1   MQPNAPQG-DTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60

Query: 61  DSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQ 120
           DSLWEHLCFRHVSSP  SSV P+++ALGGYKRLYMLCLRPVLSRLNRS LV RV TLQDQ
Sbjct: 61  DSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQ 120

Query: 121 VQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKP 159
           VQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKP
Sbjct: 121 VQRLSLSLFCVDYYERNGWLGGDAA--AAAPSLRFLCKP 156

[Close]

BLAST of Tan0004954 vs. NCBI nr
Match: XP_022136160.1 (F-box protein SNE-like [Momordica charantia])

HSP 1 Score: 240.7 bits (613), Expect = 8.5e-60
Identity = 122/163 (74.85%), Postives = 134/163 (82.21%), Query Frame = 0


Query: 1   MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60
           MQRNA E      +  KK  KF+INDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARND
Sbjct: 1   MQRNAAEK--NNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARND 60

Query: 61  DSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLN--RSDLVRRVWTLQ 120
           DSLWEHLC RH SSPPPS++  VV+ALGGYKRLYMLCLRP+L+  N  RS  VRRV TLQ
Sbjct: 61  DSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQ 120

Query: 121 DQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV 162
           D +QLSLSLFSVD YER+G + GDAA  A APSLRFLCKPVNV
Sbjct: 121 DHLQLSLSLFSVDCYERSGRIAGDAA--AAAPSLRFLCKPVNV 159

[Close]

BLAST of Tan0004954 vs. ExPASy TrEMBL
Match: A0A6J1GK18 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.7e-67
Identity = 137/162 (84.57%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60
           MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARND
Sbjct: 1   MQPNAPQG-DTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60

Query: 61  DSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQ 120
           DSLWEHLCFRHVSSPP SSV P+++ALGGYKRLYMLCLRPVLSRLNRS LV RV TLQDQ
Sbjct: 61  DSLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQ 120

Query: 121 VQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV 162
           VQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Sbjct: 121 VQRLSLSLFCVDYYERNGWLGGDAA--AAAPSLRFLCKPVNV 159

[Close]

BLAST of Tan0004954 vs. ExPASy TrEMBL
Match: A0A6J1HXD0 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 136/162 (83.95%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60
           MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARND
Sbjct: 1   MQPNAPQG-DTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60

Query: 61  DSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQ 120
           DSLWEHLCF HVSSPP SSV P+++ALGGYKRLYMLCLRPVLSRLNRS LV RV TLQDQ
Sbjct: 61  DSLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQ 120

Query: 121 VQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV 162
           VQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Sbjct: 121 VQRLSLSLFCVDYYERNGWLGGDAA--AAAPSLRFLCKPVNV 159

[Close]

BLAST of Tan0004954 vs. ExPASy TrEMBL
Match: A0A6J1C339 (F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 122/163 (74.85%), Postives = 134/163 (82.21%), Query Frame = 0


Query: 1   MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARND 60
           MQRNA E      +  KK  KF+INDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARND
Sbjct: 1   MQRNAAEK--NNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARND 60

Query: 61  DSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLN--RSDLVRRVWTLQ 120
           DSLWEHLC RH SSPPPS++  VV+ALGGYKRLYMLCLRP+L+  N  RS  VRRV TLQ
Sbjct: 61  DSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQ 120

Query: 121 DQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV 162
           D +QLSLSLFSVD YER+G + GDAA  A APSLRFLCKPVNV
Sbjct: 121 DHLQLSLSLFSVDCYERSGRIAGDAA--AAAPSLRFLCKPVNV 159

[Close]

BLAST of Tan0004954 vs. ExPASy TrEMBL
Match: A0A6P4BI13 (F-box protein SNE OS=Ziziphus jujuba OX=326968 GN=LOC107432193 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.2e-53
Identity = 117/160 (73.12%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 6   QENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWE 65
           Q+N  E     +K+ +F INDH+DIL EILKRLDGPSL AAACVCRLWCA+ RN DSLWE
Sbjct: 3   QQNRAED--QKEKRPRFCINDHIDILIEILKRLDGPSLGAAACVCRLWCAITRN-DSLWE 62

Query: 66  HLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSL 125
           HLCFRHVSSPPPSSV PVVVALGGYKRLYM+C+R VLSRL  SDLVRRVWT  D+VQLSL
Sbjct: 63  HLCFRHVSSPPPSSVRPVVVALGGYKRLYMVCVRQVLSRLGHSDLVRRVWT-GDEVQLSL 122

Query: 126 SLFSVDYYER----NGCLGGDAAAVAVAPSLRFLCKPVNV 162
           SLF VDYYER    +G LGG  A+   A SL FLCKPVNV
Sbjct: 123 SLFCVDYYERLGSGSGRLGGGDAS---ASSLMFLCKPVNV 155

[Close]

BLAST of Tan0004954 vs. ExPASy TrEMBL
Match: A0A5N6RCK8 (F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014236 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53
Identity = 115/152 (75.66%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 11  EKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFR 70
           +K    +KK KF INDH DILTEILKRLDGPSL  AACVCRLWCA+ARN DSLWEHLCFR
Sbjct: 4   KKAEEKEKKPKFCINDHADILTEILKRLDGPSLGVAACVCRLWCAIARN-DSLWEHLCFR 63

Query: 71  HVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLV-RRVWTLQDQVQLSLSLFS 130
           HV+SPPPSSV PVV+ALGGYKRLYM+C+RPVL+RL  SDLV RRVWT +D+VQLSLSLF 
Sbjct: 64  HVASPPPSSVRPVVLALGGYKRLYMVCVRPVLTRLGHSDLVRRRVWT-RDEVQLSLSLFC 123

Query: 131 VDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV 162
           VDYYER   LGG     A A SL FLCKPVNV
Sbjct: 124 VDYYERR--LGG-----ASASSLMFLCKPVNV 146

[Close]

BLAST of Tan0004954 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 154.1 bits (388), Expect = 9.8e-38
Identity = 89/157 (56.69%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 11  EKTMNNKKKIK----FAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEH 70
           EK+ N ++++     F+INDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 71  LCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLS 130
           LCFR VS  P  S+  VV ALGGY+ LY LC+RPVL+R     L + +WT +DQ+QLSLS
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWT-RDQLQLSLS 130

Query: 131 LFSVDYYER--NGCLGGDAAAVAVAPSLRFLCKPVNV 162
           L+ V YYER   G   GDA       SL FL KPVNV
Sbjct: 131 LYCVHYYERLYVGAWLGDAP----PSSLIFLRKPVNV 156

[Close]

BLAST of Tan0004954 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11
Identity = 40/109 (36.70%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 29  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVHPVVVA 88
           +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +  VV+A
Sbjct: 38  NLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DERLWELICTRHWTNIGCGQNQLRSVVLA 97

Query: 89  LGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLSLFSVDYYER 136
           LGG++RL+ L L P LS+ N      R    +D+++L+LSL S+ YYE+
Sbjct: 98  LGGFRRLHSLYLWP-LSKPN-----PRARFGKDELKLTLSLLSIRYYEK 139

The following BLAST results are available for this feature:

BLAST of Tan0004954 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	1.4e-36	56.69	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q7XAK4	1.2e-11	39.32	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9STX3	1.7e-10	36.70	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]

BLAST of Tan0004954 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952371.1	5.5e-67	84.57	F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-li...	[more]
XP_022969281.1	3.6e-66	83.95	F-box protein SNE-like [Cucurbita maxima]	[more]
KAG7011864.1	6.1e-66	83.95	F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6572228.1	2.6e-64	83.65	F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022136160.1	8.5e-60	74.85	F-box protein SNE-like [Momordica charantia]	[more]

BLAST of Tan0004954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK18	2.7e-67	84.57	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1	[more]
A0A6J1HXD0	1.7e-66	83.95	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1	[more]
A0A6J1C339	4.1e-60	74.85	F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1	[more]
A0A6P4BI13	2.2e-53	73.13	F-box protein SNE OS=Ziziphus jujuba OX=326968 GN=LOC107432193 PE=4 SV=1	[more]
A0A5N6RCK8	2.9e-53	75.66	F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014236 P...	[more]

BLAST of Tan0004954 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	9.8e-38	56.69	F-box family protein	[more]
AT4G24210.1	1.2e-11	36.70	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 28..66 e-value: 1.3E-4 score: 31.3
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 29..70 e-value: 8.0E-10 score: 38.5
None	No IPR available	GENE3D	1.20.1280.50		coord: 11..116 e-value: 2.9E-11 score: 45.1
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 4..161
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 29..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004954.1	Tan0004954.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding