Tan0004915 (gene) Snake gourd v1

Overview


Name	Tan0004915
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 2266828 .. 2268983 (+)
RNA-Seq Expression	Tan0004915
Synteny	Tan0004915

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCAAACCCCCACCGGAAAAAGCGTTTTTCTTAATTCTGCTTCTTCTTCTTCCAATTCATTCATCTCTGTTTCTTTCTATTTTTTCCTTATAAACCCTAGCCCATGGCGTCGCACGTGCAATTCAGCGAAACGGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTCGTCCGATCAATGTTCAAAAATCGCCACCGTCTACGGCTGGACCGCCTCCTGCCGGACACCGCTGACTCAACCCTAGATTCGCCTCAGAAGGACAGAAAAAACCATCCTACCCCCGGTGAGATTAAATGTTACGTTTTTTCCCAGTCATTTTCTAGGTCTTAATTAAGCCGTGTTTGGCTGCACTAATATAATCAACGAAAAAAAAAAAGGCTTTATTTGGGTCAATATTAGGGTTAAGTTTGGAGTGATTTTTGGTTAAAGTATTCTAGATTTTTTTTGGGATATATATTTTTTCTTTTGACTCAAAAGGACCAACCAAACAGCGCCTAAACAATACGATAAAAGTGGGAATAGTGAATATTCCTTATGAAGATATTTATGTGATTAAATATATATCACAATAAAAATCACTTTCTTTTCACTTCAAAGAGATCATTAATATGCTTTCCTTTCTGGTTGCTTGCATTTTTCTTTTCCTTTTCCTTTTTTTTTTCTGTTTTGTTATTACTGCTTTTTAATAACTTTCGTCTGTGATCCAGGAGGTGGCAGAATTGACGGTCGATCTAGCAGGAGATCGAGGAGGATTTCATCTCTACCGTACACTTCAATTCAAGATCAGGTCAGTAGAAGAGACTATATAACGCATTGCATTTCTTCTTTCTTTCTTTTTTATTCACCAATAATAGAAATTGTAATATTCAAACATAAATAGCAATTTTTTCTCTTATAACGTTTTTTTTGTCTTTATCTCCTTTTAATCTTCCTTTTTTTCATCAAAATTATACTCTTTTTGCGGCTGGTGTGGGTGTATGTTGTGATGACACGTGGAGCTGAATTCTGAATGAAAAATGATCATATGGTAATTAATCATAGTTTTGTGCCTCGAAAAGGGATTAGGGGTTTGAGTATCATTTTTTTTAAACAAAAAATCATATAATATACTTTCTTAATTTAACAAGTTAAAAAAATAAACTGTTCTCATATATCATGTTCTTGATCTCATGCTACACAAATATTGTATTTATTTATTTATTTAGTTGTGCTTTGTTCTTTCAATAGTCGTTTTTTTGAAATAATTTTGTTTCTTTTTAAATGTTTTAGTATTGTCTTTGAGGTCCAACTTTTTTTTTTGTTTTTAAAATATGGAATGTCGTTGATTTAAGCCTTCAATTAATTTCTTCACTACAATAACCAAATAAATAAACTCAATTATGTAATATCATTCCTAATTAAAAACTAATATTAAGCTTTATTCACATTAAAAAAAGTCTTAAATTCACATTGGAGCTTTAAATATATATTTTTTGAATTACAATCACAAAAAGATTATAGACCAGTTACTTATGTTATTTGATAACATATTATTAGTTTAAGTTTAATTGACATTTCGTGTGAATTTATAAAAATTTACGAAAGTATAAGAATCAGAATGAAAATCTTTTGAAATACGAAGATTAAAGTCACCAAATTAACATATAAAATAAAATAAATATAATGTAATTTTTAAATCCAAAGTATTTATTCACCTGCAACGCTTAATTAGTTGTAAGTCTAAATTTTGTTAATTTAAATAGAAATTAATAAAGCAGAAGAAAAATATCTCCTTCAATAATTAAAAGAGCCTCATCATGATCACTATCTTATAAATTATACGCATAAACTACTTGGGAAATAATTTTTTTATAATTAATTAATAAAATAAAATGACATGCTTGTTTGATCTGACAGGTGGTTCCACAGATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTATCAACTGAGAAATATAATAATAATATTTTTTTTCTGCAATTTTTTTTTCTTCTTTTAATCTTTATGTTTTTTCACCTTAGTTTGTTAAATCTAAATTAATGATGGTGTGAAAAAAGGGTTTAATTGGAAATTAGTGAATTTGATTGGGTGGAAGGATTAATTTTTG

mRNA sequence

CTCCCAAACCCCCACCGGAAAAAGCGTTTTTCTTAATTCTGCTTCTTCTTCTTCCAATTCATTCATCTCTGTTTCTTTCTATTTTTTCCTTATAAACCCTAGCCCATGGCGTCGCACGTGCAATTCAGCGAAACGGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTCGTCCGATCAATGTTCAAAAATCGCCACCGTCTACGGCTGGACCGCCTCCTGCCGGACACCGCTGACTCAACCCTAGATTCGCCTCAGAAGGACAGAAAAAACCATCCTACCCCCGGAGGTGGCAGAATTGACGGTCGATCTAGCAGGAGATCGAGGAGGATTTCATCTCTACCGTACACTTCAATTCAAGATCAGGTGGTTCCACAGATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTATCAACTGAGAAATATAATAATAATATTTTTTTTCTGCAATTTTTTTTTCTTCTTTTAATCTTTATGTTTTTTCACCTTAGTTTGTTAAATCTAAATTAATGATGGTGTGAAAAAAGGGTTTAATTGGAAATTAGTGAATTTGATTGGGTGGAAGGATTAATTTTTG

Coding sequence (CDS)

ATGGCGTCGCACGTGCAATTCAGCGAAACGGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTCGTCCGATCAATGTTCAAAAATCGCCACCGTCTACGGCTGGACCGCCTCCTGCCGGACACCGCTGACTCAACCCTAGATTCGCCTCAGAAGGACAGAAAAAACCATCCTACCCCCGGAGGTGGCAGAATTGACGGTCGATCTAGCAGGAGATCGAGGAGGATTTCATCTCTACCGTACACTTCAATTCAAGATCAGGTGGTTCCACAGATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTATCAACTGA

Protein sequence

MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNRHRLRLDRLLPDTADSTLDSPQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMSPIN

Homology

[Close]

BLAST of Tan0004915 vs. NCBI nr
Match: XP_004140781.1 (uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical protein Csa_009764 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46
Identity = 101/122 (82.79%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNR-HR--LRLDRLLPDTADSTLDS 60
           M SHVQF++TGP WTNEKHMHFLNS+EASFVRSMF+NR HR  LRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61  PQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMSP 120
           P    KNHPT G  RI+GRS+RRSRRISS PYTS QDQVVPQMEKRAVEDEDERDHPMSP
Sbjct: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120

[Close]

BLAST of Tan0004915 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46
Identity = 103/124 (83.06%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNRH----RLRLDRLLPDTADSTLD 60
           M SHVQFSETGPFWTNEKHMHFLNSMEASFV+SMF+NR+    RLRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SPQK-DRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPM 120
           SPQK D KNH T    RI+GRSSRRSRRISSLP+TS QDQVVPQ+EKRAVEDEDERDHPM
Sbjct: 61  SPQKDDTKNHATSEAVRINGRSSRRSRRISSLPHTSTQDQVVPQIEKRAVEDEDERDHPM 120

[Close]

BLAST of Tan0004915 vs. NCBI nr
Match: XP_022984699.1 (uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima])

HSP 1 Score: 194.5 bits (493), Expect = 5.2e-46
Identity = 101/122 (82.79%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNRH---RLRLDRLLPDTADSTLDS 60
           M SHVQFSET PFWTNEKHMHFLNSMEASFVRSMFKNR+   RLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMSP 120
           PQK+RK H    G R+DGRSSRRSRRI SLP+TSIQDQVVPQME+RAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

[Close]

BLAST of Tan0004915 vs. NCBI nr
Match: KAG6576732.1 (hypothetical protein SDJN03_24306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 5.2e-46
Identity = 101/122 (82.79%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNRH---RLRLDRLLPDTADSTLDS 60
           M SHVQFS+T PFWTNEKHMHFLNSMEASFVRSMFKNR+   RLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMSP 120
           PQK+RK H    G R+DGRSSRRSRRI SLP+TSIQDQVVPQME+RAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

[Close]

BLAST of Tan0004915 vs. NCBI nr
Match: XP_022923139.1 (uncharacterized protein LOC111430892 isoform X1 [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 6.8e-46
Identity = 101/122 (82.79%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNRH---RLRLDRLLPDTADSTLDS 60
           M SHVQFSET PFWTNEKHMHFLNSMEASFVRSMFKNR+   RL+LDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMSP 120
           PQK+RK H    G R+DGRSSRRSRRI SLP+TSIQDQVVPQME+RAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

[Close]

BLAST of Tan0004915 vs. ExPASy TrEMBL
Match: A0A0A0L5V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.6e-47
Identity = 101/122 (82.79%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNR-HR--LRLDRLLPDTADSTLDS 60
           M SHVQF++TGP WTNEKHMHFLNS+EASFVRSMF+NR HR  LRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61  PQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMSP 120
           P    KNHPT G  RI+GRS+RRSRRISS PYTS QDQVVPQMEKRAVEDEDERDHPMSP
Sbjct: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120

[Close]

BLAST of Tan0004915 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.5e-46
Identity = 101/122 (82.79%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNRH---RLRLDRLLPDTADSTLDS 60
           M SHVQFSET PFWTNEKHMHFLNSMEASFVRSMFKNR+   RLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMSP 120
           PQK+RK H    G R+DGRSSRRSRRI SLP+TSIQDQVVPQME+RAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

[Close]

BLAST of Tan0004915 vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.3e-46
Identity = 101/122 (82.79%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNRH---RLRLDRLLPDTADSTLDS 60
           M SHVQFSET PFWTNEKHMHFLNSMEASFVRSMFKNR+   RL+LDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMSP 120
           PQK+RK H    G R+DGRSSRRSRRI SLP+TSIQDQVVPQME+RAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

[Close]

BLAST of Tan0004915 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 101/123 (82.11%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKN----RHRLRLDRLLPDTADSTLD 60
           M SHVQF+ETG  WTNEKHMHFLNSMEASFVRSMF+N    R RLRLDR LPDT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPQKDRKNHPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SPQKDRKNH T G   IDGRSS RSR  SSLP+TS QDQVVPQMEKRAVEDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

[Close]

BLAST of Tan0004915 vs. ExPASy TrEMBL
Match: A0A6J1G1G2 (uncharacterized protein LOC111449801 OS=Cucurbita moschata OX=3662 GN=LOC111449801 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 101/123 (82.11%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MASHVQFSETGPFWTNEKHMHFLNSMEASFVRSMFKNRH---RLRLDRLLPDTADSTLDS 60
           MASHVQFS+TGPFWT+EKH+HFLNSMEASFVRSM++N H   RLRL+RLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  PQKDRKN-HPTPGGGRIDGRSSRRSRRISSLPYTSIQDQVVPQMEKRAVEDEDERDHPMS 120
            QK RKN HPT GGGR+DGRSSRRSRRISSLP  SIQDQVVPQME RA E+EDE DHP S
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120

The following BLAST results are available for this feature:

BLAST of Tan0004915 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004915 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140781.1	1.4e-46	82.79	uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical ...	[more]
XP_038882732.1	4.0e-46	83.06	uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]	[more]
XP_022984699.1	5.2e-46	82.79	uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima]	[more]
KAG6576732.1	5.2e-46	82.79	hypothetical protein SDJN03_24306, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923139.1	6.8e-46	82.79	uncharacterized protein LOC111430892 isoform X1 [Cucurbita moschata]	[more]

BLAST of Tan0004915 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5V0	6.6e-47	82.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]
A0A6J1JBA6	2.5e-46	82.79	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E5I2	3.3e-46	82.79	uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CHV7	1.2e-45	82.11	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G1G2	1.6e-45	82.11	uncharacterized protein LOC111449801 OS=Cucurbita moschata OX=3662 GN=LOC1114498...	[more]

BLAST of Tan0004915 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..97
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..113
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004915.1	Tan0004915.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold