Tan0004736 (gene) Snake gourd v1

Overview


Name	Tan0004736
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	PH domain-containing protein
Location	LG07: 66419211 .. 66421751 (+)
RNA-Seq Expression	Tan0004736
Synteny	Tan0004736

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTGTGCAAGTTTTAAACCCGCGCCGAGTTGCAGCGCATTGCCATTGGCTCCTCTCGCCGCCATTCCATTTGCTTGAAATCGCCGTCACTTTCACGAAGATCTTCCTCAACCTTCTGCAGAAACCCCACCAAGAAAAGCGACCCATCGCCGAGCGATATGGGTGGAGCCCAGGCCCTTAAGAGGATCCCTCGCATCAAGTTCCCCAAACGACATCCCAACCCCTCTGGTCCGCCTCCATCTTCCCTTTTCTTCTTTACAAAATCCATGATGATCTTCCTCAAACAGAGCAAATCTTCTACACCCATATGAAATCCGCCGCGTGTTTTCTCTTTTTTCTCCCTGGTGTTTGTTTTTGATCGTCTCCCTGTTGTTCTGTTCCTCTATTCTTGACTTTCCCTGTGTTTATGGCTGTGATTTCGTTTTCGTTTGGTTTCTGTTTGGTTGCTTGGATTTGGGTTTTTCTCTCTAGCATGGTCAGATGTTTGCTTTTATGGTAATGAATTTTGTTTGACTTCTAGCCTGTTTTAGCTTGTTAATGGAGAACCTGGTGCATTTATGTGGACTAAATATGTTTGTCATTAATTGGTTCTCTCCTTGCTATGCTGACTTAACTCTGCTTTTTCCACATTTGAATGGCATTCTCTTAACCTAGATTTTGAAATGTAATGAAACAGATTAGTAAGCTAAGCTTCAGGTTTAGAATAAAACTTGATTCAAAGAATGGGGAGGAGTGGATTTTGTTAGAATCTCAGTTTGACTTAGTAGTTTTTTTTTTAATCTGGGGATGTTTTTTTTCCGATAACATAAACCATTTTATTGATGCAAAAAGTAGATAAGACTCCAAGCACCTATAAGTGAATTACTTTATCTAAAGATGTTTTTTCTTCTTCTATTAGGAGTTTAGGACCTTATTATCTAAGGACTGCACTTGGAATGCTTAGAATTGAGGCTCAAGTACTACCTATTTTTGTTTGGCCACAATGTGTTTCTCTCGTTTGCCATACGTTTATCGATATATCTCGTGAAACACTAATTTGAGAAATCCTTCTATATATTTCTATGCCTATTTCAGAATGTCTCTTCAATTTCAGAGTTGACACAAAATCGATTTGACGAGCATGTCTACCTAACATTGCCACCTATTTGAAAAGAAAGAAAAATGTAGAGCTAGGCAATGTATTAAAGTTGTATATTTGTAGCTAACTTGTTTTAATAGACACCAACCTGACATTGTTGGATGACGAGTTGAAGTGTCGTATAATATCGACCGATGAATTCTGTCTTGGTGATATGTTTTCTAAAGTTTTCTGTCTAGTGTCTGTCATTTTATAGTAGTAAATACTGAAGAAAGTTTTACAGGTTCTACTTCCCAAACTCCATCAAGCAGTGGGGTGGATGATCAAATTTGCTTTTCTTCTTTGAGTGAAAATGCATCCAAAGCTGTTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATATCCAATGAGGAGATTGAGGCTATTTTGGTAATAGAACCTATTCCTATTTGGTTGTTGCTTTTATCATTATTACTGATTTATCTGTTTTTTCTTCTGATGCAATGTGCTTCAAGCATTCAATTTGAACTTTTCTTATTGCAATAAAGGAAACAAATCACCATGAGATACCAACCTTAAACCTTAAAAAAACCCCATCTGGTCTCATTATGTGCTTCAATGAGTAACTTTGTCAAATTAAGGACTAGCGAGTCGAAAGCACGAGTCATTTCATTTGGTTGTGATTTAGAAATCCTTCATGGAACGAGAAGTTATGGAAGG

mRNA sequence

GTTTCTGTGCAAGTTTTAAACCCGCGCCGAGTTGCAGCGCATTGCCATTGGCTCCTCTCGCCGCCATTCCATTTGCTTGAAATCGCCGTCACTTTCACGAAGATCTTCCTCAACCTTCTGCAGAAACCCCACCAAGAAAAGCGACCCATCGCCGAGCGATATGGGTGGAGCCCAGGCCCTTAAGAGGATCCCTCGCATCAAGTTCCCCAAACGACATCCCAACCCCTCTGGTTCTACTTCCCAAACTCCATCAAGCAGTGGGGTGGATGATCAAATTTGCTTTTCTTCTTTGAGTGAAAATGCATCCAAAGCTGTTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATATCCAATGAGGAGATTGAGGCTATTTTGGTAATAGAACCTATTCCTATTTGGTTGTTGCTTTTATCATTATTACTGATTTATCTGTTTTTTCTTCTGATGCAATGTGCTTCAAGCATTCAATTTGAACTTTTCTTATTGCAATAAAGGAAACAAATCACCATGAGATACCAACCTTAAACCTTAAAAAAACCCCATCTGGTCTCATTATGTGCTTCAATGAGTAACTTTGTCAAATTAAGGACTAGCGAGTCGAAAGCACGAGTCATTTCATTTGGTTGTGATTTAGAAATCCTTCATGGAACGAGAAGTTATGGAAGG

Coding sequence (CDS)

ATGGGTGGAGCCCAGGCCCTTAAGAGGATCCCTCGCATCAAGTTCCCCAAACGACATCCCAACCCCTCTGGTTCTACTTCCCAAACTCCATCAAGCAGTGGGGTGGATGATCAAATTTGCTTTTCTTCTTTGAGTGAAAATGCATCCAAAGCTGTTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATATCCAATGAGGAGATTGAGGCTATTTTGGTAATAGAACCTATTCCTATTTGGTTGTTGCTTTTATCATTATTACTGATTTATCTGTTTTTTCTTCTGATGCAATGTGCTTCAAGCATTCAATTTGAACTTTTCTTATTGCAATAA

Protein sequence

MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQPKRTPISNEEIEAILVIEPIPIWLLLLSLLLIYLFFLLMQCASSIQFELFLLQ

Homology

[Close]

BLAST of Tan0004736 vs. NCBI nr
Match: XP_038875405.1 (uncharacterized protein LOC120067868 [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 3.9e-27
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MGGAQA+KRIPRIKFPKRHPNPSGSTS+TPSSSGVDDQI FSSL + ASK VGGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSGSTSKTPSSSGVDDQIFFSSLEQTASKTVGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEEIEAIL+
Sbjct: 61 KRTPLSNEEIEAILL 75

[Close]

BLAST of Tan0004736 vs. NCBI nr
Match: KAG7035504.1 (hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MGGAQALKRIPRIKFPKRHPNPSGSTSQTP+S GVDDQ+ F SL+E ASK +GGKASLQP
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEEIEAILV
Sbjct: 61 KRTPMSNEEIEAILV 75

[Close]

BLAST of Tan0004736 vs. NCBI nr
Match: XP_023534508.1 (uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 hypothetical protein SDJN03_02911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-26
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MGGAQALKRIPRIKFPKRHPNPSGSTSQTP+S GVDDQ+ F SL+E ASK +GGKASLQP
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEEIEAIL+
Sbjct: 61 KRTPMSNEEIEAILL 75

[Close]

BLAST of Tan0004736 vs. NCBI nr
Match: XP_022958002.1 (uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 uncharacterized protein LOC111491585 [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MG AQALKRIPRIKFPKRHPNPSGSTSQTP+S GVDDQ+ F SL+E ASK +GGKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEEIEAIL+
Sbjct: 61 KRTPMSNEEIEAILL 75

[Close]

BLAST of Tan0004736 vs. NCBI nr
Match: XP_008437426.1 (PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-23
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MGGAQA+KRIPRIKFPKRHP+ SGSTS+TPSS+G DD I FSSL ++ASK VGGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPSSSGSTSKTPSSNGGDDHIFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KR P+SNEEIEAIL+
Sbjct: 61 KRIPLSNEEIEAILL 75

[Close]

BLAST of Tan0004736 vs. ExPASy TrEMBL
Match: A0A6J1K8D8 (uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MG AQALKRIPRIKFPKRHPNPSGSTSQTP+S GVDDQ+ F SL+E ASK +GGKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEEIEAIL+
Sbjct: 61 KRTPMSNEEIEAILL 75

[Close]

BLAST of Tan0004736 vs. ExPASy TrEMBL
Match: A0A6J1H0Q6 (uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC111459363 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MG AQALKRIPRIKFPKRHPNPSGSTSQTP+S GVDDQ+ F SL+E ASK +GGKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEEIEAIL+
Sbjct: 61 KRTPMSNEEIEAILL 75

[Close]

BLAST of Tan0004736 vs. ExPASy TrEMBL
Match: A0A1S3AUJ6 (uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MGGAQA+KRIPRIKFPKRHP+ SGSTS+TPSS+G DD I FSSL ++ASK VGGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPSSSGSTSKTPSSNGGDDHIFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KR P+SNEEIEAIL+
Sbjct: 61 KRIPLSNEEIEAILL 75

[Close]

BLAST of Tan0004736 vs. ExPASy TrEMBL
Match: A0A6J1DS43 (uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023342 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MGGAQA+KRIPRIKFPKRHPNPSGSTSQTPS+ GVDDQ+ FS  + N  K VGGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSGSTSQTPSNLGVDDQVIFS--TGNVLKTVGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEEIEA+L+
Sbjct: 61 KRTPMSNEEIEAVLL 73

[Close]

BLAST of Tan0004736 vs. ExPASy TrEMBL
Match: A0A0A0KMD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          MGGAQA+KRIPRIKFPKRH + SGSTS+TPSS G DD + FSSL ++ASK VGGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHLSSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEEIEAIL+
Sbjct: 61 KRTPLSNEEIEAILL 75

[Close]

BLAST of Tan0004736 vs. TAIR 10
Match: AT4G23885.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 5.2e-14
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASKAVGGKASLQP 60
          M     LKRIPRIKFP+RH NPS S  ++  ++   D + FS+L+ N  K  GGKAS QP
Sbjct: 1  MNVVHGLKRIPRIKFPQRHINPSASEGKSQVANEA-DTLFFSNLN-NIQKTTGGKASSQP 60

Query: 61 KRTPISNEEIEAILV 76
          KRTP+SNEE+EAIL+
Sbjct: 61 KRTPVSNEEMEAILL 73

[Close]

BLAST of Tan0004736 vs. TAIR 10
Match: AT5G24165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 5.4e-11
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 7  LKRIPRIKFPKRHPNPSGSTSQTPSSSGVDDQICFSSLSENASK--AVGGKASLQPKRTP 66
          ++RIPRIKFP+RH   SGS     S SGV   +  SS    A K  A GGKASLQPKRTP
Sbjct: 1  MRRIPRIKFPQRHSISSGSGPAPGSVSGVKKNVTASSDVPAAPKNTADGGKASLQPKRTP 60

Query: 67 ISNEEIEAILV 76
          +S++EIE+I++
Sbjct: 61 VSDKEIESIML 71

The following BLAST results are available for this feature:

BLAST of Tan0004736 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004736 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875405.1	3.9e-27	88.00	uncharacterized protein LOC120067868 [Benincasa hispida]	[more]
KAG7035504.1	1.1e-26	86.67	hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023534508.1	2.5e-26	85.33	uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 ...	[more]
XP_022958002.1	2.8e-25	84.00	uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 unchar...	[more]
XP_008437426.1	3.4e-23	80.00	PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo]	[more]

BLAST of Tan0004736 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8D8	1.3e-25	84.00	uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585...	[more]
A0A6J1H0Q6	1.3e-25	84.00	uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC1114593...	[more]
A0A1S3AUJ6	1.6e-23	80.00	uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=...	[more]
A0A6J1DS43	2.1e-23	80.00	uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0KMD8	1.1e-22	78.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1	[more]

BLAST of Tan0004736 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23885.1	5.2e-14	56.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G24165.1	5.4e-11	54.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR35751	FAMILY NOT NAMED	coord: 2..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004736.1	Tan0004736.1	mRNA
Tan0004736.2	Tan0004736.2	mRNA