Tan0004427 (gene) Snake gourd v1

Overview


Name	Tan0004427
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Pol protein
Location	LG08: 11785654 .. 11787202 (+)
RNA-Seq Expression	Tan0004427
Synteny	Tan0004427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCCGAGAATGTCCCGTCAAAGCCAACTCATGGGAAAGACAAGTGCAAGTACACCTGACGCGGCGACGGCGTACGTACGACCAAGTTATATTCCGCCGCTTATTTTACTTGATGCTTGGTTGAGGACTGAAGAACCTCGCCTAAAGACCCGACGAGGCCACAAAGCGTTGCGATCATAACGATGGGGCAGGAGTTCCCCTCAAGGCTGGCCATGTTCGAGGGATGAATCATGCCGCCGCACGGTCCGAAAGGTGCGACCGTGACACTAGGCACCTAGTTGAACTTCAGTAACTCGTTTCACCTCCAGACAGACGGTCAGATGGAACGGTTGAACCAGGTGTTGGAGGACATGTTACGAGCATACGCTCTCGACTGTCCAGGCAGTTGGGATACCCATCTGCATCTGATGGAATTTGCTTACAATAATAGCTACCAAGCAACGATAGGTATGGCGCCGTTTGAAGCATCGTATGGAAGGAGGTGCAGAACTCCCGTTTACTGGGACGAGGTTGGTGAATGCTAGTTATTGGGTCCCGAGTTAATCCAAGTTACGAATGATGTGATACAAAAGATCCGAGCGAGAATGCAAACTGCACAGAGTAGGCAGAAGAGCTATGATGACTCAAGGCGGAGGGACTTGGAGTTCGATGTGGACAACCATGTGTTCCTTAAGGTGCCCTCGATGATGGGAGTTGTAAGTTTTGATCGGAAAGGGAAGCCGAGTCCACACTTTATAAGGCCATTCGAGATTTTAGAGCAGATTGGTCCAGTGACTTATCGATTGGCATTGCTGCCATTTCTCTCTTCAGTTCATAATATCTTTCATGTCTCCATGTTGAGGAAATACGTGCCTGACCCAATGCGTGTGGTTGATTTTGAACCCTTGCGGTTGAACGAGGACCTGAGCTACGAGGAGCAACCAACACGAATTCTCGCCAGAGACCAAAAGGTTCTCCGTAACCGAGCTATCAATCTGGTCAAGGTCTTATGGAAAAACCAACAAGAAGAGGAGCTAATTGGGAACAAGAGGAGGAAGTGCGAGCCAACTAAAGTCGCCTACCGAAGCCGTTCGTTCGTGGGTTCATGTCGGAGCCGCATTTTCGTGGATTCGCCGCCTCACCTTCTTGTGGCCGATTCACCATCTTTTGGTCCAGTTCTCAAGATGAGCCAACTAGTTCGGTGTAGATCGCCGTGCGGGCTTCCTAAAACTTGTTTCCTTTGGTCGATCCGCCGCCACTGATTTCAGATCTGCAAGTAGGTTCGCCTGAGGTGTTTTCAGCCTTCATATTACCATTGGTCGGTAAATTTTAATTCTGATTCGTGGTTTTGATTTAAAGGTCGTTGTTAAGTATGAATTCTGATTTGGTTAAGGTTGTCCTAGGACTTTATCAATGTTCGAAGGAAGGGCGACGAAATCTAAGCAAGGTCAGCGTTGTCTTGATTCAAAATTTGGACGGATGTATGTGGAAACAGAGTCATTAGACCCTTAGGCTTCGTGTTTTAATGTTGTTGTGGATTGGTGGGTTAATTTTGGAGTTCTGATTAAAC

mRNA sequence

GATCCGAGAATGTCCCGTCAAAGCCAACTCATGGGAAAGACAAGTGCAAGTACACCTGACGCGGCGACGGCGTACGTACGACCAAGTTATATTCCGCCGCTTATTTTACTTGATGCTTGGTTGAGGACTGAAGAACCTCGCCTAAAGACCCGACGAGGCCACAAAGCGTTGCGATCATAACGATGGGGCAGGAGTTCCCCTCAAGGCTGGCCATGTTCGAGGGATGAATCATGCCGCCGCACGGTCCGAAAGGTGCGACCGTGACACTAGGCACCTAGTTGAACTTCAGTAACTCGTTTCACCTCCAGACAGACGGTCAGATGGAACGGTTGAACCAGGTGTTGGAGGACATGTTACGAGCATACGCTCTCGACTGTCCAGGCAGTTGGGATACCCATCTGCATCTGATGGAATTTGCTTACAATAATAGCTACCAAGCAACGATAGGTATGGCGCCGTTTGAAGCATCGTATGGAAGGAGGTGCAGAACTCCCGTTTACTGGGACGAGGTTGGTGAATGCTAGTTATTGGGTCCCGAGTTAATCCAAGTTACGAATGATGTGATACAAAAGATCCGAGCGAGAATGCAAACTGCACAGAGTAGGCAGAAGAGCTATGATGACTCAAGGCGGAGGGACTTGGAGTTCGATGTGGACAACCATGTGTTCCTTAAGGTGCCCTCGATGATGGGAGTTGTAAGTTTTGATCGGAAAGGGAAGCCGAGTCCACACTTTATAAGGCCATTCGAGATTTTAGAGCAGATTGGTCCAGTGACTTATCGATTGGCATTGCTGCCATTTCTCTCTTCAGTTCATAATATCTTTCATGTCTCCATGTTGAGGAAATACGTGCCTGACCCAATGCGTGTGGTTGATTTTGAACCCTTGCGGTTGAACGAGGACCTGAGCTACGAGGAGCAACCAACACGAATTCTCGCCAGAGACCAAAAGGTTCTCCGTAACCGAGCTATCAATCTGGTCAAGGTCTTATGGAAAAACCAACAAGAAGAGGAGCTAATTGGGAACAAGAGGAGGAAGTGCGAGCCAACTAAAGTCGCCTACCGAAGCCGTTCGTTCGTGGGTTCATGTCGGAGCCGCATTTTCGTGGATTCGCCGCCTCACCTTCTTGTGGCCGATTCACCATCTTTTGGTCCAGTTCTCAAGATGAGCCAACTAGTTCGGTGTAGATCGCCGTGCGGGCTTCCTAAAACTTGTTTCCTTTGGTCGATCCGCCGCCACTGATTTCAGATCTGCAAGTAGGTTCGCCTGAGGTGTTTTCAGCCTTCATATTACCATTGGTCGGTAAATTTTAATTCTGATTCGTGGTTTTGATTTAAAGGTCGTTGTTAAGTATGAATTCTGATTTGGTTAAGGTTGTCCTAGGACTTTATCAATGTTCGAAGGAAGGGCGACGAAATCTAAGCAAGGTCAGCGTTGTCTTGATTCAAAATTTGGACGGATGTATGTGGAAACAGAGTCATTAGACCCTTAGGCTTCGTGTTTTAATGTTGTTGTGGATTGGTGGGTTAATTTTGGAGTTCTGATTAAAC

Coding sequence (CDS)

ATGCAAACTGCACAGAGTAGGCAGAAGAGCTATGATGACTCAAGGCGGAGGGACTTGGAGTTCGATGTGGACAACCATGTGTTCCTTAAGGTGCCCTCGATGATGGGAGTTGTAAGTTTTGATCGGAAAGGGAAGCCGAGTCCACACTTTATAAGGCCATTCGAGATTTTAGAGCAGATTGGTCCAGTGACTTATCGATTGGCATTGCTGCCATTTCTCTCTTCAGTTCATAATATCTTTCATGTCTCCATGTTGAGGAAATACGTGCCTGACCCAATGCGTGTGGTTGATTTTGAACCCTTGCGGTTGAACGAGGACCTGAGCTACGAGGAGCAACCAACACGAATTCTCGCCAGAGACCAAAAGGTTCTCCGTAACCGAGCTATCAATCTGGTCAAGGTCTTATGGAAAAACCAACAAGAAGAGGAGCTAATTGGGAACAAGAGGAGGAAGTGCGAGCCAACTAAAGTCGCCTACCGAAGCCGTTCGTTCGTGGGTTCATGTCGGAGCCGCATTTTCGTGGATTCGCCGCCTCACCTTCTTGTGGCCGATTCACCATCTTTTGGTCCAGTTCTCAAGATGAGCCAACTAGTTCGGTGTAGATCGCCGTGCGGGCTTCCTAAAACTTGTTTCCTTTGGTCGATCCGCCGCCACTGA

Protein sequence

MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQIGPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARDQKVLRNRAINLVKVLWKNQQEEELIGNKRRKCEPTKVAYRSRSFVGSCRSRIFVDSPPHLLVADSPSFGPVLKMSQLVRCRSPCGLPKTCFLWSIRRH

Homology

[Close]

BLAST of Tan0004427 vs. NCBI nr
Match: KAA0058449.1 (pol protein [Cucumis melo var. makuwa] >TYJ96711.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 4.5e-48
Identity = 103/166 (62.05%), Postives = 124/166 (74.70%), Query Frame = 0


Query: 1   MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQI 60
           M TAQSRQKS+ D RR+DLEFDV + VFL V  M GV+ F++KGK SPHF+ PFEILE+I
Sbjct: 267 MLTAQSRQKSFVDVRRKDLEFDVGDMVFLMVAPMKGVMRFEKKGKLSPHFVGPFEILERI 326

Query: 61  GPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARD 120
           GPV YRLAL P  S+VH++FHVSMLRKYV DP  VVD+EPL++NE+LSYEEQP  ILAR+
Sbjct: 327 GPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDYEPLKINENLSYEEQPVEILARE 386

Query: 121 QKVLRNRAINLVKVLWKNQQEEELIGNKRRKCEPTKVAYRSRSFVG 167
            KVLRNR I+LVKVLW+N + EE I  +            +R  VG
Sbjct: 387 VKVLRNRGISLVKVLWRNHEVEEAIWEREDDMRAHSSLTATRQAVG 432

[Close]

BLAST of Tan0004427 vs. NCBI nr
Match: TYK22921.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 4.5e-48
Identity = 100/143 (69.93%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQI 60
           MQTAQSRQKSY D RR+DLEFDV + VFLKV  M GV+ F+RKGKPSP F+  FEILEQI
Sbjct: 1   MQTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERKGKPSPRFVGLFEILEQI 60

Query: 61  GPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARD 120
           GPV YRLAL P LS+VH++FHVSMLRKYVPDP  VVD+EPL ++E+LSY EQP  +LA++
Sbjct: 61  GPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAKE 120

Query: 121 QKVLRNRAINLVKVLWKNQQEEE 144
            K+LRNR I LVK LW+N Q EE
Sbjct: 121 VKMLRNREIPLVKFLWRNHQVEE 143

[Close]

BLAST of Tan0004427 vs. NCBI nr
Match: KAA0033160.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 5.9e-48
Identity = 100/143 (69.93%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQI 60
           MQTAQSRQKSY D RR+DLEFDV + VFLKV  M GV+ F+RKGKPSP F+  FEILEQI
Sbjct: 1   MQTAQSRQKSYADVRRKDLEFDVRDKVFLKVAPMKGVLRFERKGKPSPRFVGLFEILEQI 60

Query: 61  GPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARD 120
           GPV YRLAL P LS+VH++FHVSMLRKYVPDP  VVD+EPL ++E+LSY EQP  +LA++
Sbjct: 61  GPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAKE 120

Query: 121 QKVLRNRAINLVKVLWKNQQEEE 144
            K+LRNR I LVK LW+N Q EE
Sbjct: 121 VKMLRNREIPLVKFLWRNHQVEE 143

[Close]

BLAST of Tan0004427 vs. NCBI nr
Match: KAA0054231.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 7.7e-48
Identity = 104/176 (59.09%), Postives = 126/176 (71.59%), Query Frame = 0


Query: 2    QTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQIG 61
            +TAQSRQKSY D RR+DLEFDV + VFLKV  M GV+ F+R+GK SP F+ PFEILE+IG
Sbjct: 1550 ETAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 1609

Query: 62   PVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARDQ 121
            PV YRLAL P LS+VH++FHVSMLRKYVPDP  VVD+EPL ++E+LSY EQP  +LAR+ 
Sbjct: 1610 PVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREV 1669

Query: 122  KVLRNRAINLVKVLWKNQQEEELIGNKRRKCEPTKVAYRSRSFVGSCRSRIFVDSP 178
            K+LRNR I LVKVLW+N + EE    +      T  + R   F  S R     D P
Sbjct: 1670 KMLRNREIPLVKVLWRNHRVEEATWEREDDMSSTVRSPRPHPFPISFRPHATTDPP 1725

[Close]

BLAST of Tan0004427 vs. NCBI nr
Match: KAA0062520.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-47
Identity = 98/143 (68.53%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1    MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQI 60
            M TAQSRQKSY D RR+DLEF+V + VFLKV  M GV+ F+R+GK SP F+RPFEILE+I
Sbjct: 1521 MHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVRPFEILERI 1580

Query: 61   GPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARD 120
            GPV YRLAL P LS+VH++FHVSMLRKYVPDP  VVD+EPL ++E+LSY EQP  +LAR+
Sbjct: 1581 GPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVGVLARE 1640

Query: 121  QKVLRNRAINLVKVLWKNQQEEE 144
             KVLRNR I LVK+LW+N + EE
Sbjct: 1641 VKVLRNREIPLVKILWRNHRVEE 1663

[Close]

BLAST of Tan0004427 vs. ExPASy TrEMBL
Match: A0A5D3BDH8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00280 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 103/166 (62.05%), Postives = 124/166 (74.70%), Query Frame = 0


Query: 1   MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQI 60
           M TAQSRQKS+ D RR+DLEFDV + VFL V  M GV+ F++KGK SPHF+ PFEILE+I
Sbjct: 267 MLTAQSRQKSFVDVRRKDLEFDVGDMVFLMVAPMKGVMRFEKKGKLSPHFVGPFEILERI 326

Query: 61  GPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARD 120
           GPV YRLAL P  S+VH++FHVSMLRKYV DP  VVD+EPL++NE+LSYEEQP  ILAR+
Sbjct: 327 GPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDYEPLKINENLSYEEQPVEILARE 386

Query: 121 QKVLRNRAINLVKVLWKNQQEEELIGNKRRKCEPTKVAYRSRSFVG 167
            KVLRNR I+LVKVLW+N + EE I  +            +R  VG
Sbjct: 387 VKVLRNRGISLVKVLWRNHEVEEAIWEREDDMRAHSSLTATRQAVG 432

[Close]

BLAST of Tan0004427 vs. ExPASy TrEMBL
Match: A0A5D3DGY9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2564G00010 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 100/143 (69.93%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQI 60
           MQTAQSRQKSY D RR+DLEFDV + VFLKV  M GV+ F+RKGKPSP F+  FEILEQI
Sbjct: 1   MQTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERKGKPSPRFVGLFEILEQI 60

Query: 61  GPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARD 120
           GPV YRLAL P LS+VH++FHVSMLRKYVPDP  VVD+EPL ++E+LSY EQP  +LA++
Sbjct: 61  GPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAKE 120

Query: 121 QKVLRNRAINLVKVLWKNQQEEE 144
            K+LRNR I LVK LW+N Q EE
Sbjct: 121 VKMLRNREIPLVKFLWRNHQVEE 143

[Close]

BLAST of Tan0004427 vs. ExPASy TrEMBL
Match: A0A5A7SQH4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8271G00010 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 100/143 (69.93%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQI 60
           MQTAQSRQKSY D RR+DLEFDV + VFLKV  M GV+ F+RKGKPSP F+  FEILEQI
Sbjct: 1   MQTAQSRQKSYADVRRKDLEFDVRDKVFLKVAPMKGVLRFERKGKPSPRFVGLFEILEQI 60

Query: 61  GPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARD 120
           GPV YRLAL P LS+VH++FHVSMLRKYVPDP  VVD+EPL ++E+LSY EQP  +LA++
Sbjct: 61  GPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAKE 120

Query: 121 QKVLRNRAINLVKVLWKNQQEEE 144
            K+LRNR I LVK LW+N Q EE
Sbjct: 121 VKMLRNREIPLVKFLWRNHQVEE 143

[Close]

BLAST of Tan0004427 vs. ExPASy TrEMBL
Match: A0A5A7UL17 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001760 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 104/176 (59.09%), Postives = 126/176 (71.59%), Query Frame = 0


Query: 2    QTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQIG 61
            +TAQSRQKSY D RR+DLEFDV + VFLKV  M GV+ F+R+GK SP F+ PFEILE+IG
Sbjct: 1550 ETAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 1609

Query: 62   PVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARDQ 121
            PV YRLAL P LS+VH++FHVSMLRKYVPDP  VVD+EPL ++E+LSY EQP  +LAR+ 
Sbjct: 1610 PVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREV 1669

Query: 122  KVLRNRAINLVKVLWKNQQEEELIGNKRRKCEPTKVAYRSRSFVGSCRSRIFVDSP 178
            K+LRNR I LVKVLW+N + EE    +      T  + R   F  S R     D P
Sbjct: 1670 KMLRNREIPLVKVLWRNHRVEEATWEREDDMSSTVRSPRPHPFPISFRPHATTDPP 1725

[Close]

BLAST of Tan0004427 vs. ExPASy TrEMBL
Match: A0A5A7V5L6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7126G00110 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 8.4e-48
Identity = 98/143 (68.53%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1    MQTAQSRQKSYDDSRRRDLEFDVDNHVFLKVPSMMGVVSFDRKGKPSPHFIRPFEILEQI 60
            M TAQSRQKSY D RR+DLEF+V + VFLKV  M GV+ F+R+GK SP F+RPFEILE+I
Sbjct: 1521 MHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVRPFEILERI 1580

Query: 61   GPVTYRLALLPFLSSVHNIFHVSMLRKYVPDPMRVVDFEPLRLNEDLSYEEQPTRILARD 120
            GPV YRLAL P LS+VH++FHVSMLRKYVPDP  VVD+EPL ++E+LSY EQP  +LAR+
Sbjct: 1581 GPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVGVLARE 1640

Query: 121  QKVLRNRAINLVKVLWKNQQEEE 144
             KVLRNR I LVK+LW+N + EE
Sbjct: 1641 VKVLRNREIPLVKILWRNHRVEE 1663

The following BLAST results are available for this feature:

BLAST of Tan0004427 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004427 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058449.1	4.5e-48	62.05	pol protein [Cucumis melo var. makuwa] >TYJ96711.1 pol protein [Cucumis melo var...	[more]
TYK22921.1	4.5e-48	69.93	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033160.1	5.9e-48	69.93	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054231.1	7.7e-48	59.09	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062520.1	1.7e-47	68.53	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0004427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDH8	2.2e-48	62.05	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00280 PE...	[more]
A0A5D3DGY9	2.2e-48	69.93	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2564G00010 P...	[more]
A0A5A7SQH4	2.9e-48	69.93	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8271G00010 P...	[more]
A0A5A7UL17	3.8e-48	59.09	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7V5L6	8.4e-48	68.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold71...	[more]

BLAST of Tan0004427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..144
None	No IPR available	PANTHER	PTHR46148:SF11	CCHC-TYPE INTEGRASE	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004427.1	Tan0004427.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding