Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACCGTCCACCAAAATTAATCATTTAAAATCTCTCTCTCTCTCTCTCTCTTTTATTTCTATCAAAAACCCAATAAAAATATGAAAAAACCATCCACAATATTTCTCTTCTTTATTCTCTTTTTCATCACAGCTTCCTCCGCCGTAAGCGGCGGCATTAGTGGCCGGAAACTGCTCAACGTTCCAGACATGTCCGGGGGACCCAATGGAGGTGGAGGTGTGAACCCCACGGGGGGCTATGGCGCTGCCCATGGTCCTAATTGGGACTATAATTGGGGTTGGGGTTCGATACCGGGGGGCGGATGGGGCTTCGGTTCGGGCTCCGGCCGCTCCCCGACCGGGTTTGGAAAAGGATACGGATATGGGTTTGGATCGGGGACCGGGTCGGGGTGGGGATCAGGATCCGGATATGGAAGTGGGGGTGGCGCTGGATTTGGGTTCGGAAGTGGCTACGGAAATTCCGGCGTCGACGGATACGGTGGTTCGAGTGCTAGCAAGTATCGTTCGCCAACCACTACAAAGGACAATAGCAAGCATGGCTAAACAAAAAAAAAAGTATGTGAATGAATATATATTATGTTATATACTATATAGTTAATTATATAAATATGTGAGAATGGTTAAGACGTTACCCCTAACTCCCTTTAATATCTCTATAATATGGTTTGTAAGCTTGCTTAAAGTTTGCCCATATGTATTATATTAGTTTTTTAATAAAACTAAACTATATTTCTCGTCTTTCATTTTTATTTTTATTTTTTTTATTCTAAGGTATATTTGGAAGATGTATTCTGTTGTTTTAGATCGGCAAAGGAAAAAAAAAAAGATAACAATGAATCAAGTCTTAGAAACATTATTTTGAGAGTGGAGGAGAC
mRNA sequence
TTACCGTCCACCAAAATTAATCATTTAAAATCTCTCTCTCTCTCTCTCTCTTTTATTTCTATCAAAAACCCAATAAAAATATGAAAAAACCATCCACAATATTTCTCTTCTTTATTCTCTTTTTCATCACAGCTTCCTCCGCCGTAAGCGGCGGCATTAGTGGCCGGAAACTGCTCAACGTTCCAGACATGTCCGGGGGACCCAATGGAGGTGGAGGTGTGAACCCCACGGGGGGCTATGGCGCTGCCCATGGTCCTAATTGGGACTATAATTGGGGTTGGGGTTCGATACCGGGGGGCGGATGGGGCTTCGGTTCGGGCTCCGGCCGCTCCCCGACCGGGTTTGGAAAAGGATACGGATATGGGTTTGGATCGGGGACCGGGTCGGGGTGGGGATCAGGATCCGGATATGGAAGTGGGGGTGGCGCTGGATTTGGGTTCGGAAGTGGCTACGGAAATTCCGGCGTCGACGGATACGGTGGTTCGAGTGCTAGCAAGTATCGTTCGCCAACCACTACAAAGGACAATAGCAAGCATGGCTAAACAAAAAAAAAAGTATGTGAATGAATATATATTATGTTATATACTATATAGTTAATTATATAAATATGTGAGAATGGTTAAGACGTTACCCCTAACTCCCTTTAATATCTCTATAATATGGTTTGTAAGCTTGCTTAAAGTTTGCCCATATGTATTATATTAGTTTTTTAATAAAACTAAACTATATTTCTCGTCTTTCATTTTTATTTTTATTTTTTTTATTCTAAGGTATATTTGGAAGATGTATTCTGTTGTTTTAGATCGGCAAAGGAAAAAAAAAAAGATAACAATGAATCAAGTCTTAGAAACATTATTTTGAGAGTGGAGGAGAC
Coding sequence (CDS)
ATGAAAAAACCATCCACAATATTTCTCTTCTTTATTCTCTTTTTCATCACAGCTTCCTCCGCCGTAAGCGGCGGCATTAGTGGCCGGAAACTGCTCAACGTTCCAGACATGTCCGGGGGACCCAATGGAGGTGGAGGTGTGAACCCCACGGGGGGCTATGGCGCTGCCCATGGTCCTAATTGGGACTATAATTGGGGTTGGGGTTCGATACCGGGGGGCGGATGGGGCTTCGGTTCGGGCTCCGGCCGCTCCCCGACCGGGTTTGGAAAAGGATACGGATATGGGTTTGGATCGGGGACCGGGTCGGGGTGGGGATCAGGATCCGGATATGGAAGTGGGGGTGGCGCTGGATTTGGGTTCGGAAGTGGCTACGGAAATTCCGGCGTCGACGGATACGGTGGTTCGAGTGCTAGCAAGTATCGTTCGCCAACCACTACAAAGGACAATAGCAAGCATGGCTAA
Protein sequence
MKKPSTIFLFFILFFITASSAVSGGISGRKLLNVPDMSGGPNGGGGVNPTGGYGAAHGPNWDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSGSGYGSGGGAGFGFGSGYGNSGVDGYGGSSASKYRSPTTTKDNSKHG
Homology
BLAST of Tan0004385 vs. NCBI nr
Match:
XP_022984415.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])
HSP 1 Score: 177.9 bits (450), Expect = 6.4e-41
Identity = 109/157 (69.43%), Postives = 120/157 (76.43%), Query Frame = 0
Query: 1 MKKPSTIFLFFILFFITASSAVSGGISGRKLLNVPDMSGGPNGGGGVNPTGGYGAAHGPN 60
MKKPST L F+L FITASSA+S RKLLN P MS GPNG GG NPTGGYG++HGPN
Sbjct: 1 MKKPSTFHLIFLLLFITASSAISRRDHSRKLLNFPSMSWGPNGNGGGNPTGGYGSSHGPN 60
Query: 61 WDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGF--GSGTGSGWGSGSGYGSGGGAGF 120
W+YNWGWGS PG GWG+GSGSGRS GFGKGYGYGF GSG+GSGWG GSG G G G+
Sbjct: 61 WNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGGAHGGGY 120
Query: 121 GFGSGYGNSGVDGYGG----SSASKYRSPTTTKDNSK 152
GFGSGYGNSG G GG SS S+YRS T ++D SK
Sbjct: 121 GFGSGYGNSGGSGNGGGYSRSSGSEYRSATNSEDKSK 157
BLAST of Tan0004385 vs. NCBI nr
Match:
XP_016901488.1 (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo] >KAA0044686.1 glycine-rich cell wall structural protein 2 [Cucumis melo var. makuwa] >TYK16898.1 glycine-rich cell wall structural protein 2 [Cucumis melo var. makuwa])
HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 112/165 (67.88%), Postives = 124/165 (75.15%), Query Frame = 0
Query: 1 MKKPSTIF---LFFILFFITASSAVSGGISGRKLLNVPDMS-GGPNGGGG--VNPTGGYG 60
MK+PS LFF+LF +T+SS VSG + RKLLN PDMS G PNGGGG NPTG YG
Sbjct: 1 MKQPSKFHLSSLFFLLFVLTSSSTVSGAATPRKLLNFPDMSWGSPNGGGGGNGNPTGAYG 60
Query: 61 AAHGPNWDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSGSGYGSGG 120
+ H PNWDYNWGWGS PG GWGFGSGSGRSPTGFGKGYGYGFGSG+GSG G G G GSGG
Sbjct: 61 SGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGG 120
Query: 121 --GAGFGFGSGYGNS----GVDGYGGSSASKYRSPTTTKDNSKHG 154
G G+G GSGYGNS G GYGG S +YRSPTTT+D ++ G
Sbjct: 121 AHGGGYGSGSGYGNSGGGGGGGGYGGPSGDEYRSPTTTRDKNRQG 165
BLAST of Tan0004385 vs. NCBI nr
Match:
XP_038899364.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])
HSP 1 Score: 172.2 bits (435), Expect = 3.5e-39
Identity = 113/163 (69.33%), Postives = 127/163 (77.91%), Query Frame = 0
Query: 1 MKKPST---IFLFFILFFITA-SSAVSGGISGRKLLNVPDMS-GGPN-GGGGVNPTGGYG 60
MKKPST + LFF+LF +TA SS VSG + RKLLN PDMS G PN GGGG NPTG YG
Sbjct: 1 MKKPSTFHLLSLFFLLFVMTATSSTVSGVATARKLLNFPDMSWGSPNGGGGGGNPTGAYG 60
Query: 61 AAHGPNWDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSGSGYGSGG 120
+AHGPNWDYNWGWGS PG GWG+GSGSGRSPTGFGKGYGYG+G G+GSG G G G GSGG
Sbjct: 61 SAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGYGYGSGSGSGFGYGSGSGG 120
Query: 121 --GAGFGFGSGYGNSGVD----GYGGSSASKYRSPTTTKDNSK 152
G G+G GSGYGNSG + GYGG + +YRSPTTTKD ++
Sbjct: 121 AHGGGYGSGSGYGNSGGNGSGGGYGGPNGEEYRSPTTTKDKNR 163
BLAST of Tan0004385 vs. NCBI nr
Match:
XP_023549488.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 171.4 bits (433), Expect = 6.0e-39
Identity = 109/154 (70.78%), Postives = 119/154 (77.27%), Query Frame = 0
Query: 1 MKKPSTIFLFFILFFITASSAVSGGISGRKLLNVPDMSGGPNGGGGVNPTGGYGAAHGPN 60
MKKPST L F+L FITASSAVS RKLLN P MS GPNG GG NPTGGYG++HGPN
Sbjct: 1 MKKPSTFHLIFLLLFITASSAVSRRDHSRKLLNFPGMSWGPNGNGGGNPTGGYGSSHGPN 60
Query: 61 WDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSGSGYGSGGG----A 120
W+YNWGWGS PG GWG+GSGSGRS GFGKGYGYGFGSG+GS GSG GYGSGGG +
Sbjct: 61 WNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGS--GSGWGYGSGGGGAHSS 120
Query: 121 GFGFGSGYGNSGVDGYGG----SSASKYRSPTTT 147
G+GFGSGYGNSG G GG SS S+YRS T +
Sbjct: 121 GYGFGSGYGNSGGGGNGGGYSRSSDSEYRSATNS 152
BLAST of Tan0004385 vs. NCBI nr
Match:
XP_004146895.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN53182.1 hypothetical protein Csa_015364 [Cucumis sativus])
HSP 1 Score: 169.9 bits (429), Expect = 1.8e-38
Identity = 111/166 (66.87%), Postives = 124/166 (74.70%), Query Frame = 0
Query: 1 MKKPSTIF---LFFILFFITASSAVSGGISGRKLLNVPDMS-GGPNGGGG---VNPTGGY 60
MK+PS LFF+LF +T+SS VS G + RKLLN PDMS G P+GGGG NPTG Y
Sbjct: 1 MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSPSGGGGGGNGNPTGAY 60
Query: 61 GAAHGPNWDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSGSGYGSG 120
G+ HGPNWDYNWGWGS PG GWGFGSGSGRSPTGFGKGYGYGFGSG+GSG G G G GSG
Sbjct: 61 GSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSG 120
Query: 121 G--GAGFGFGSGYGNSG----VDGYGGSSASKYRSPTTTKDNSKHG 154
G G G+G GSGYGNSG GYGG S +YRSP TT+D ++ G
Sbjct: 121 GAHGGGYGSGSGYGNSGGGGSGGGYGGPSGDEYRSPMTTRDKNRQG 166
BLAST of Tan0004385 vs. ExPASy TrEMBL
Match:
A0A6J1J8K0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482719 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 3.1e-41
Identity = 109/157 (69.43%), Postives = 120/157 (76.43%), Query Frame = 0
Query: 1 MKKPSTIFLFFILFFITASSAVSGGISGRKLLNVPDMSGGPNGGGGVNPTGGYGAAHGPN 60
MKKPST L F+L FITASSA+S RKLLN P MS GPNG GG NPTGGYG++HGPN
Sbjct: 1 MKKPSTFHLIFLLLFITASSAISRRDHSRKLLNFPSMSWGPNGNGGGNPTGGYGSSHGPN 60
Query: 61 WDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGF--GSGTGSGWGSGSGYGSGGGAGF 120
W+YNWGWGS PG GWG+GSGSGRS GFGKGYGYGF GSG+GSGWG GSG G G G+
Sbjct: 61 WNYNWGWGSSPGSGWGYGSGSGRSSNGFGKGYGYGFGSGSGSGSGWGYGSGGGGAHGGGY 120
Query: 121 GFGSGYGNSGVDGYGG----SSASKYRSPTTTKDNSK 152
GFGSGYGNSG G GG SS S+YRS T ++D SK
Sbjct: 121 GFGSGYGNSGGSGNGGGYSRSSGSEYRSATNSEDKSK 157
BLAST of Tan0004385 vs. ExPASy TrEMBL
Match:
A0A5A7TRC6 (Glycine-rich cell wall structural protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00320 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 7.7e-40
Identity = 112/165 (67.88%), Postives = 124/165 (75.15%), Query Frame = 0
Query: 1 MKKPSTIF---LFFILFFITASSAVSGGISGRKLLNVPDMS-GGPNGGGG--VNPTGGYG 60
MK+PS LFF+LF +T+SS VSG + RKLLN PDMS G PNGGGG NPTG YG
Sbjct: 1 MKQPSKFHLSSLFFLLFVLTSSSTVSGAATPRKLLNFPDMSWGSPNGGGGGNGNPTGAYG 60
Query: 61 AAHGPNWDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSGSGYGSGG 120
+ H PNWDYNWGWGS PG GWGFGSGSGRSPTGFGKGYGYGFGSG+GSG G G G GSGG
Sbjct: 61 SGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGG 120
Query: 121 --GAGFGFGSGYGNS----GVDGYGGSSASKYRSPTTTKDNSKHG 154
G G+G GSGYGNS G GYGG S +YRSPTTT+D ++ G
Sbjct: 121 AHGGGYGSGSGYGNSGGGGGGGGYGGPSGDEYRSPTTTRDKNRQG 165
BLAST of Tan0004385 vs. ExPASy TrEMBL
Match:
A0A1S4DZT0 (glycine-rich cell wall structural protein 2 OS=Cucumis melo OX=3656 GN=LOC103494444 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 7.7e-40
Identity = 112/165 (67.88%), Postives = 124/165 (75.15%), Query Frame = 0
Query: 1 MKKPSTIF---LFFILFFITASSAVSGGISGRKLLNVPDMS-GGPNGGGG--VNPTGGYG 60
MK+PS LFF+LF +T+SS VSG + RKLLN PDMS G PNGGGG NPTG YG
Sbjct: 1 MKQPSKFHLSSLFFLLFVLTSSSTVSGAATPRKLLNFPDMSWGSPNGGGGGNGNPTGAYG 60
Query: 61 AAHGPNWDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSGSGYGSGG 120
+ H PNWDYNWGWGS PG GWGFGSGSGRSPTGFGKGYGYGFGSG+GSG G G G GSGG
Sbjct: 61 SGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGG 120
Query: 121 --GAGFGFGSGYGNS----GVDGYGGSSASKYRSPTTTKDNSKHG 154
G G+G GSGYGNS G GYGG S +YRSPTTT+D ++ G
Sbjct: 121 AHGGGYGSGSGYGNSGGGGGGGGYGGPSGDEYRSPTTTRDKNRQG 165
BLAST of Tan0004385 vs. ExPASy TrEMBL
Match:
A0A0A0KXP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025120 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 8.5e-39
Identity = 111/166 (66.87%), Postives = 124/166 (74.70%), Query Frame = 0
Query: 1 MKKPSTIF---LFFILFFITASSAVSGGISGRKLLNVPDMS-GGPNGGGG---VNPTGGY 60
MK+PS LFF+LF +T+SS VS G + RKLLN PDMS G P+GGGG NPTG Y
Sbjct: 1 MKEPSKFHLSSLFFLLFVLTSSSTVSCGATPRKLLNFPDMSWGSPSGGGGGGNGNPTGAY 60
Query: 61 GAAHGPNWDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSGSGYGSG 120
G+ HGPNWDYNWGWGS PG GWGFGSGSGRSPTGFGKGYGYGFGSG+GSG G G G GSG
Sbjct: 61 GSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSG 120
Query: 121 G--GAGFGFGSGYGNSG----VDGYGGSSASKYRSPTTTKDNSKHG 154
G G G+G GSGYGNSG GYGG S +YRSP TT+D ++ G
Sbjct: 121 GAHGGGYGSGSGYGNSGGGGSGGGYGGPSGDEYRSPMTTRDKNRQG 166
BLAST of Tan0004385 vs. ExPASy TrEMBL
Match:
A0A6J1FQS0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111447601 PE=4 SV=1)
HSP 1 Score: 169.1 bits (427), Expect = 1.4e-38
Identity = 106/157 (67.52%), Postives = 117/157 (74.52%), Query Frame = 0
Query: 1 MKKPSTIFLFFILFFITASSAVSGGISGRKLLNVPDMSGGPNGGGGVNPTGGYGAAHGPN 60
MKKPST L F+L FITASSAVS RKLLN P MS GPNG GG NPTGGYG++HGPN
Sbjct: 1 MKKPSTFHLIFLLSFITASSAVSRRDHSRKLLNFPGMSWGPNGNGGGNPTGGYGSSHGPN 60
Query: 61 WDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGF--GSGTGSGWGSGSGYGSGGGAGF 120
W+YNWGWGS PG GWG+GSGSGR GFGKGYGYGF GSG+GSGWG GSG G G G+
Sbjct: 61 WNYNWGWGSSPGSGWGYGSGSGRPSNGFGKGYGYGFGSGSGSGSGWGYGSGGGGAHGGGY 120
Query: 121 GFGSGYGNSGVDGYGG----SSASKYRSPTTTKDNSK 152
GFGSGYGNS G GG SS ++Y S T +KD +K
Sbjct: 121 GFGSGYGNSEGGGNGGGYSRSSGTEYHSTTNSKDKNK 157
BLAST of Tan0004385 vs. TAIR 10
Match:
AT5G61660.1 (glycine-rich protein )
HSP 1 Score: 87.8 bits (216), Expect = 8.2e-18
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0
Query: 48 NPTGGYGAAHGPNWDYNWGWGSIPGGGWGFGSGSGRSPTGFGKGYGYGFGSGTGSGWGSG 107
N G G+ GPNW+YNWGWGS PG GWG+G+GSGRSPTG+G+G GYG+GSG+GSG G G
Sbjct: 29 NMPGESGSGRGPNWEYNWGWGSAPGSGWGYGAGSGRSPTGWGRGSGYGYGSGSGSGTGYG 88
Query: 108 SGYGSGG--GAGFGFGSGYGNSGVDGYGG 135
G G GG G G+G+GSG G SG G GG
Sbjct: 89 YGSGGGGARGGGYGYGSGNGRSGGGGGGG 117
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022984415.1 | 6.4e-41 | 69.43 | glycine-rich cell wall structural protein 2-like [Cucurbita maxima] | [more] |
XP_016901488.1 | 1.6e-39 | 67.88 | PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo] >KAA004468... | [more] |
XP_038899364.1 | 3.5e-39 | 69.33 | glycine-rich cell wall structural protein 2-like [Benincasa hispida] | [more] |
XP_023549488.1 | 6.0e-39 | 70.78 | putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo... | [more] |
XP_004146895.1 | 1.8e-38 | 66.87 | glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN53182.1 hypoth... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1J8K0 | 3.1e-41 | 69.43 | glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... | [more] |
A0A5A7TRC6 | 7.7e-40 | 67.88 | Glycine-rich cell wall structural protein 2 OS=Cucumis melo var. makuwa OX=11946... | [more] |
A0A1S4DZT0 | 7.7e-40 | 67.88 | glycine-rich cell wall structural protein 2 OS=Cucumis melo OX=3656 GN=LOC103494... | [more] |
A0A0A0KXP2 | 8.5e-39 | 66.87 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025120 PE=4 SV=1 | [more] |
A0A6J1FQS0 | 1.4e-38 | 67.52 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
Match Name | E-value | Identity | Description | |
AT5G61660.1 | 8.2e-18 | 64.04 | glycine-rich protein | [more] |