Tan0004369 (gene) Snake gourd v1

Overview
NameTan0004369
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG03: 57512621 .. 57515735 (-)
RNA-Seq ExpressionTan0004369
SyntenyTan0004369
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTAAGGTATAACATTGCGGCAATACCACAGGTAGGGGGTGCGTTAGGTGTCACGTAGCCAGGAGAGTGTAGAACTTGAAGGAGATCAGGGAACGTGGTGTGTTGTGATCCTTTGGATTAGTGGTCTAGAGTATTTTTATGCTCGCCTTATGCTACACTATTTCTCTCTTTTCAGGTGATTGGCGATTTGGGAGGCGCATGGCAGAGACATTGATTTGGCAAGGGTATGGAGATATAGTTGTTTCTCTATTTCCAAGATAGAGGAGTTGTCCAGTGTCTTGTTATTTTCCTTTCCCTCCTATTTCGGCTGTGTTTTCGTTACTTTTAATAATTTTGACAAATTTTGACTTTAATTTAAAATGTTTTGCAAGTATATTTTGTTTTAAAACAAGATTCTGAAATAAAGTGAATTCTTGTGAAATGTTCCGTTGTTCTTAGGACGTGTTGAGTAAGGTTTAAGTAACCATCCATGATGGGTCGTTACCTAACCAGGTTAATTTGGTTTGGTCCAAATAAGGAGGGAAAATAAGTTGTTTGAAGTTAATGTTTAAATGCAAGGTATTTGCCTAAATCGACATAAGTTTTATTTTTCTAGACCACAATTTTCTTGATGATTTGCACGAATTTTGATTCTATGTTGTTTTTTCTAAATTTAGAATTTCAATTTTTGATTAAATTGTGTTAAGATATTTTTTGTTCTCCAGATTTTTCCTCATGATTATTGATTAGTTTGGATTTAAATATTAATAGAGATATTCTTTTATTGCTTTGATTTAATCTTTATTTATTTTAGATACTGGATTTCGAATAGGGATATTTTAGTCAAATGCATATTTATAGATTCTCTCTAAATGGATTAGTAATTGGCAATTTTTTCAAACTGGCCCATTAAATATGGCCGTTTACCCAGTTGTCCCTTAATTAAATCACTAAACACACGTTAAAAACATAATTGGGCTTAGTTCTTTTTTTCTTCTTTTTTTTGAAATGAGGGCTAAGTAATTATTACAACGTATTTTTATAGATAATTTAAGTTACACAAAATACAAACTAAAGAAAGCATAACTGAATTGAGATATTAAATGTATTAACGACTCTGAGATCTATGATTCGAATCCCTCAATTCTTATCGTACTTAAGAAAAAGTTACACAAAATAAAAATTAGAAGTACGCAGAAGCTTCTTAATTTGACAAAATTAACACAATTACAATTATGTAAAATAATATTTATAAGCTAGGTGATTTCAATTTTACCCCTAATTAATGTTTTGCAAAAATCTCATTTCGATCCCAAATATGTGGTTTTCACTTTTTAATAGAAATTACTAACAAAGTATTGTTTATACAAATAAAAAAAAAGGATAAAATTGAAATTCTTAAAGCATAAAAGGTAAATTTGAAATTAACTATATAGAAGAATAATATTTGGCATAATTTAGACTAAAAAAAACTCCCAAACATATTCCAAAATTGAGGTAGTTGTGTCTTAAACATGTTTCTTATGGCTGCACACATTATGTCAGAAAGCAAATTAAAAGTTTTGGAAGACAAACCAAAAAGGTTGTTGGCTCTTGCTTTGTACAAATCCCTTTTTGTGATACAAAATTCAAGTTGAACTTTTCTTTTTCAAAAATACACTTTTTTTCCTTTGTGCATTTTTCTTATGTGCTAATAACTAAATATAAAAAGCTCTAATTTGATTCATGAGCCCAATGCATGAACTAGGTTTAAATCCTATTTTACTGTTTTAAATGTTTGTATTTATATCTTTTAGTCTCTAAATTTTATTTTTAAAAATTATAATTTTCAGTAATTATTTAACAAAATTTTATACATATATATTTTAGAGTTTGACACATTTAATCTATTATGAATAGTACTTGTCACTAGGATTTTGTTCATCAAATAAATGACTAAAATGTCTTTGTCAAGTTTTTATTACATTTATTACATAAACTAAAAAAAAAAGGTTAAATTCATCCCTTAAAAAGTTTCTAATAAGCTTTTGAACTTCTAATTTGGTGTCTAATAAATTTAATTCATAACTCTATTAATTTAACACTTATGTCTTTGATTGGATGTGTGTTTAATTTATAAGAACTCAAATAGAAATTAACAAACTACATGATTCTTGAATAATACATATAATTAGCATGTTAGATTAATATGAAATAAGTTTGTTACTCCTATTTGTCACAAAATTAAAGTTTAGAAACTACCCTACACAACTCCAAAAATTTAGAAATCAAACCTATAATTTAATGCAATAAATTTTATAGGAAGAAATAAAGTAAATTTTCCTTCAAAGTTCTAGAACAAAAATAAAACTTTTTTAGTACAACACATTTGATTTAATATTCTACTTGTTTTCTAATACCAACTACTGTGGTGTCAAGTGGTTCTTCCGTGAGATTAATCAAGGTGTACATTAAACTGGTCCATATACTCATGAATATTTAGAAAAAAATACAACAAATTACAATTTACAATGGTTAAGGTTGACAATCTCCAATATTTATTTCTTTTTAATATAATAGAGTTGGGGAATTCGAACCATAGACCTCGTAGTCGTTAACACATCAGATATATCAGTTAAACTATGTTTTTTTTTTCATAATCTCCAATATTGATATCACATAAAATTACTATTAAATTTAAAGACTAAACTTTTTTTTTCTTTTACTAGTTTTGCAAAATTTACAAGACGAAGATATTCAACAAAAGACAAAATAGGGAAATTCAAGTGATTAAAAAATGTCAACAACATTCATGGATGACAGCCATAGATGGAAGAGGAGAGGTGGAAAAGGCAAAGAAGATAAGAAGCACCATAATGAAAAGGGGCGCCAAGAGCACCACCGTAGGCGGCGGTGGCAGCGGCGGAAGAAGCAGAGGCAGCACCAGAAGGCACACTGTCCAAAGCAATAAAGCCATCTTCGAATACCAGAAACCGCCATCGGCCATTATTTTCTCCGGCAATTCACTCTCTTCATTTGAGCTCTTCTGGGAGGAGGGTGTGGCGCAGCCGCCGTGGAAAATAGTGGCGGCCGGTGAGAGAGAAGAGGAAAGAGATGGAGCTAAGGTGGAGAATTTGGACATGGAGATGTAG

mRNA sequence

ATGGCTCTAAGGTATAACATTGCGGCAATACCACAGTTTTGCAAAATTTACAAGACGAAGATATTCAACAAAAGACAAAATAGGGAAATTCAAGTGATTAAAAAATGTCAACAACATTCATGGATGACAGCCATAGATGGAAGAGGAGAGGTGGAAAAGGCAAAGAAGATAAGAAGCACCATAATGAAAAGGGGCGCCAAGAGCACCACCGTAGGCGGCGGTGGCAGCGGCGGAAGAAGCAGAGGCAGCACCAGAAGGCACACTGTCCAAAGCAATAAAGCCATCTTCGAATACCAGAAACCGCCATCGGCCATTATTTTCTCCGGCAATTCACTCTCTTCATTTGAGCTCTTCTGGGAGGAGGGTGTGGCGCAGCCGCCGTGGAAAATAGTGGCGGCCGGTGAGAGAGAAGAGGAAAGAGATGGAGCTAAGGTGGAGAATTTGGACATGGAGATGTAG

Coding sequence (CDS)

ATGGCTCTAAGGTATAACATTGCGGCAATACCACAGTTTTGCAAAATTTACAAGACGAAGATATTCAACAAAAGACAAAATAGGGAAATTCAAGTGATTAAAAAATGTCAACAACATTCATGGATGACAGCCATAGATGGAAGAGGAGAGGTGGAAAAGGCAAAGAAGATAAGAAGCACCATAATGAAAAGGGGCGCCAAGAGCACCACCGTAGGCGGCGGTGGCAGCGGCGGAAGAAGCAGAGGCAGCACCAGAAGGCACACTGTCCAAAGCAATAAAGCCATCTTCGAATACCAGAAACCGCCATCGGCCATTATTTTCTCCGGCAATTCACTCTCTTCATTTGAGCTCTTCTGGGAGGAGGGTGTGGCGCAGCCGCCGTGGAAAATAGTGGCGGCCGGTGAGAGAGAAGAGGAAAGAGATGGAGCTAAGGTGGAGAATTTGGACATGGAGATGTAG

Protein sequence

MALRYNIAAIPQFCKIYKTKIFNKRQNREIQVIKKCQQHSWMTAIDGRGEVEKAKKIRSTIMKRGAKSTTVGGGGSGGRSRGSTRRHTVQSNKAIFEYQKPPSAIIFSGNSLSSFELFWEEGVAQPPWKIVAAGEREEERDGAKVENLDMEM
Homology
[Close]
BLAST of Tan0004369 vs. NCBI nr
Match: KAG6603315.1 (hypothetical protein SDJN03_03924, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-15
Identity = 61/105 (58.10%), Postives = 70/105 (66.67%), Query Frame = 0 

Query: 45  IDGRGEVEKAKKIRSTIMKRGAKSTTVGGGGSGGRSRGSTRRHTVQSNKAIFEYQKPPS- 104
           +DG+GEVEKAKK R +I K G KSTTVGGGGSGGRSRGSTRR TVQ+NKA  E+QK    
Sbjct: 1   MDGKGEVEKAKKRRRSIRKMGTKSTTVGGGGSGGRSRGSTRRQTVQTNKATLEHQKKQQP 60

Query: 105 AIIFSGNSLSSFELFWEEGVAQPPWKIVAAGEREEERDGAKVENL 149
           AII SGN +S         V+   W++VAA     E D AK E L
Sbjct: 61  AIILSGNLVS------PPCVSSCGWRVVAA--PAVEIDVAKGEEL 97

The following BLAST results are available for this feature:
BLAST of Tan0004369 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0004369 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603315.12.7e-1558.10hypothetical protein SDJN03_03924, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Tan0004369 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Tan0004369 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0004369.1Tan0004369.1mRNA