Tan0004143 (gene) Snake gourd v1

Overview


Name	Tan0004143
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	early light-induced protein 1, chloroplastic-like
Location	LG10: 6539680 .. 6540856 (+)
RNA-Seq Expression	Tan0004143
Synteny	Tan0004143

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAACCCCGCCGAGTTTCCGATCAATTTCGCCAACTCAACCCACACTCTTCATTGCCAATCCTCAACCTCCGCCACCGCCTCCATCATATATAGTAACGTCTCTCTTGCTCCGGCGTCGTTTAATCCCTCCGAACAGAGCGACATGGCAGCTTCTGCTTTGATGCACGCCATTCCGGCGAGCTCTTCTACTCGGAGTACCTGTAAGACATCGACGAGTCGTCTTCTCTCGGCGGCGATTCGACCTTGTCACCGGAGGGTGGCCTCCTTCCGTGTGCGCTGTACGGCTGAGGTACTGTTTTCTCAGCGACTAATTGTACTTCTATTCCGCGATCATTAAACTTCCTAGGGCTGAATTTGTGGATTCATCTGTTTTTCCTGTTTTGATTTCCAGGAGGATCAGAGAGAGCAACCGATTCCTTCATCTACATCAGTTCCGCCGCTGTCTCCCAAACCAGAGCCATCCCCGGCGCCACCGAAGGTAAATCCTGCGCAAACGTAATGGATCGTAAGCGCGCTTGTTTCGAAAACATCGTTAATTTCGAATCTGTTCATTTCCGTAGGTGAGTTCAAAATTTTCGGAGATCTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTAGCGATGATAGGGTTTGTAGCTGCCCTAGCGGTGGAAGTAGCGAAGGGACAAGGCCTATTCGAGCAAATAGGGAATGGATCAGGAATTCCATGGTTCGTGGGAACGAGCGTGGTTCTGTCAGTGGCATCGTTGATTCCATTGCTAAGAGGAGTGAGCGCTGAATCTAAGTCGAAGGGAGTGATGAACTCCGATGCAGAGCTGTGGAATGGAAGGTTTGCGATGTTGGGAATCGTTGCTTTGGCTTTCACTGAATACGTCAAGGGCGGAAGCCTTGTGTAAGTGTAAGTTGCCGTTCTGAAATGTAATCAAGCGAAGATATTATAAATTTATAATTTATAACACGAGCCTTTATATTAAATTTCCATTTTCATTATGACTAAGAAATTCAGGTTTGCAAATTATGATTTCAATTGTAAATGTTTCTCTCTATTCCCCATTTTTTGTTCGCAAGGATGGTTAGATTTCTTTGGAATTTCTATGTGGTGTATCTTTTTTTTAATAATTAATGATTATAATTATAACAGTAGTGGTGGATTAGAATATAAA

mRNA sequence

ATAAACCCCGCCGAGTTTCCGATCAATTTCGCCAACTCAACCCACACTCTTCATTGCCAATCCTCAACCTCCGCCACCGCCTCCATCATATATAGTAACGTCTCTCTTGCTCCGGCGTCGTTTAATCCCTCCGAACAGAGCGACATGGCAGCTTCTGCTTTGATGCACGCCATTCCGGCGAGCTCTTCTACTCGGAGTACCTGTAAGACATCGACGAGTCGTCTTCTCTCGGCGGCGATTCGACCTTGTCACCGGAGGGTGGCCTCCTTCCGTGTGCGCTGTACGGCTGAGGAGGATCAGAGAGAGCAACCGATTCCTTCATCTACATCAGTTCCGCCGCTGTCTCCCAAACCAGAGCCATCCCCGGCGCCACCGAAGGTGAGTTCAAAATTTTCGGAGATCTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTAGCGATGATAGGGTTTGTAGCTGCCCTAGCGGTGGAAGTAGCGAAGGGACAAGGCCTATTCGAGCAAATAGGGAATGGATCAGGAATTCCATGGTTCGTGGGAACGAGCGTGGTTCTGTCAGTGGCATCGTTGATTCCATTGCTAAGAGGAGTGAGCGCTGAATCTAAGTCGAAGGGAGTGATGAACTCCGATGCAGAGCTGTGGAATGGAAGGTTTGCGATGTTGGGAATCGTTGCTTTGGCTTTCACTGAATACGTCAAGGGCGGAAGCCTTGTGTAAGTGTAAGTTGCCGTTCTGAAATGTAATCAAGCGAAGATATTATAAATTTATAATTTATAACACGAGCCTTTATATTAAATTTCCATTTTCATTATGACTAAGAAATTCAGGTTTGCAAATTATGATTTCAATTGTAAATGTTTCTCTCTATTCCCCATTTTTTGTTCGCAAGGATGGTTAGATTTCTTTGGAATTTCTATGTGGTGTATCTTTTTTTTAATAATTAATGATTATAATTATAACAGTAGTGGTGGATTAGAATATAAA

Coding sequence (CDS)

ATGGCAGCTTCTGCTTTGATGCACGCCATTCCGGCGAGCTCTTCTACTCGGAGTACCTGTAAGACATCGACGAGTCGTCTTCTCTCGGCGGCGATTCGACCTTGTCACCGGAGGGTGGCCTCCTTCCGTGTGCGCTGTACGGCTGAGGAGGATCAGAGAGAGCAACCGATTCCTTCATCTACATCAGTTCCGCCGCTGTCTCCCAAACCAGAGCCATCCCCGGCGCCACCGAAGGTGAGTTCAAAATTTTCGGAGATCTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTAGCGATGATAGGGTTTGTAGCTGCCCTAGCGGTGGAAGTAGCGAAGGGACAAGGCCTATTCGAGCAAATAGGGAATGGATCAGGAATTCCATGGTTCGTGGGAACGAGCGTGGTTCTGTCAGTGGCATCGTTGATTCCATTGCTAAGAGGAGTGAGCGCTGAATCTAAGTCGAAGGGAGTGATGAACTCCGATGCAGAGCTGTGGAATGGAAGGTTTGCGATGTTGGGAATCGTTGCTTTGGCTTTCACTGAATACGTCAAGGGCGGAAGCCTTGTGTAA

Protein sequence

MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSSTSVPPLSPKPEPSPAPPKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQGLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGIVALAFTEYVKGGSLV

Homology

[Close]

BLAST of Tan0004143 vs. ExPASy Swiss-Prot
Match: P93735 (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.1e-48
Identity = 113/196 (57.65%), Postives = 146/196 (74.49%), Query Frame = 0


Query: 3   ASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAE---EDQREQPIPS 62
           AS  M ++ A   T  T K +T++L SA   P  +R     VRC AE    ++   P PS
Sbjct: 4   ASFNMQSVFAGGLT--TRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPS 63

Query: 63  STSVPPL--SPKPEPSPAPPKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKG 122
           +++  PL  SP P P P  PKVS+KFS++LAFSGPAPERINGRLAM+GFVAALAVE++KG
Sbjct: 64  TSAAQPLPKSPSP-PPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKG 123

Query: 123 QGLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLG 182
           + +  QI +G G+ WF+GT+ +L++ASL+PL +G+S ESKSKG+M SDAELWNGRFAMLG
Sbjct: 124 ENVLAQISDG-GVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLG 183

Query: 183 IVALAFTEYVKGGSLV 194
           +VALAFTE+VKGG+LV
Sbjct: 184 LVALAFTEFVKGGTLV 195

[Close]

BLAST of Tan0004143 vs. ExPASy Swiss-Prot
Match: P11432 (Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-45
Identity = 108/195 (55.38%), Postives = 139/195 (71.28%), Query Frame = 0


Query: 2   AASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSST 61
           +  ++M     + S+RS     T+  + +   P  RR  S +VR  AE + +EQ   +  
Sbjct: 5   SCQSIMSNSMTNISSRSRVNQFTN--IPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVD 64

Query: 62  SVPPLSPKPEPSPA---PPKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQ 121
              P +  P P PA   PPK+S+KFS+++AFSGPAPERINGRLAMIGFVAA+ VE+AKGQ
Sbjct: 65  PTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQ 124

Query: 122 GLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGI 181
           GL EQ+ +G G+ WF+GTSV+LS+ASLIP  +GVS ESKSK +M+SDAE WNGR AMLG+
Sbjct: 125 GLSEQL-SGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGL 184

Query: 182 VALAFTEYVKGGSLV 194
           VALAFTE+VKG SLV
Sbjct: 185 VALAFTEFVKGTSLV 196

[Close]

BLAST of Tan0004143 vs. ExPASy Swiss-Prot
Match: Q94K66 (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 95/162 (58.64%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 37  RRVASFRVRCTAEEDQREQ----PIPSSTSVPPLSPKPEPSP-APPKVSSKFSEILAFSG 96
           +R+A   VRC A+ D  ++    P  S+++ PP  P+  P P + PKVS+KF ++LAFSG
Sbjct: 33  KRIAPVGVRCMAQGDPIKEDPSVPSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSG 92

Query: 97  PAPERINGRLAMIGFVAALAVEVAKGQGLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRG 156
           PAPERINGRLAM+GFVAA+A+E++KG+ +F QI +G G+ WF+GT+ +L++AS++PL +G
Sbjct: 93  PAPERINGRLAMVGFVAAIAMELSKGENVFAQISDG-GVGWFLGTTALLTLASMVPLFKG 152

Query: 157 VSAESKSKGVMNSDAELWNGRFAMLGIVALAFTEYVKGGSLV 194
           + AE+KSKG M SDAELWNGRFAMLG+VALAFTEYV GG+LV
Sbjct: 153 IRAEAKSKGFMTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193

[Close]

BLAST of Tan0004143 vs. ExPASy Swiss-Prot
Match: P14895 (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-35
Identity = 86/152 (56.58%), Postives = 108/152 (71.05%), Query Frame = 0


Query: 51  DQREQPIPSSTSVPP---LSPKPEPSPAPPKVSSKFS-----EILAFSGPAPERINGRLA 110
           D  ++   +STS  P    SP P   PA PK  +K +     + LAFSGPAPERINGRLA
Sbjct: 78  DSAKETTSASTSPSPSQYTSPSPTTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLA 137

Query: 111 MIGFVAALAVEVAKGQGLFEQIGN-GSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGV 170
           M+GFVAAL+VE A+G GL +Q+G   SG+ WF+ T+ V SVASL+PLL+G S ESKS G+
Sbjct: 138 MVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGI 197

Query: 171 MNSDAELWNGRFAMLGIVALAFTEYVKGGSLV 194
            ++DAELWNGRFAMLG+VALA TE++ G   V
Sbjct: 198 WSADAELWNGRFAMLGLVALAATEFITGAPFV 229

[Close]

BLAST of Tan0004143 vs. ExPASy Swiss-Prot
Match: P14896 (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.4e-34
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 72  PSPAPPKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQGLFEQIGNGSGIP 131
           P P  PK S+   + +AFSGPAPERINGRLAM+GFV ALAVE  +G GL  Q+G+G+G  
Sbjct: 44  PPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQA 103

Query: 132 WFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGIVALAFTEYVKG 190
           WF  T  +LS+ASL+PLL+G SAE ++  +MN++AELWNGRFAM+G+VALA TE + G
Sbjct: 104 WFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161

[Close]

BLAST of Tan0004143 vs. NCBI nr
Match: XP_038880321.1 (early light-induced protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 278.9 bits (712), Expect = 3.4e-71
Identity = 155/196 (79.08%), Postives = 173/196 (88.27%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +IPASS+ R   +TST+RLL AAIRP  RR+ASFRVRCTAEEDQREQPI  S
Sbjct: 1   MAASAVMQSIPASSANRGISRTSTNRLLPAAIRPYSRRMASFRVRCTAEEDQREQPI--S 60

Query: 61  TSVPPLSPKPEPSPA---PPKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKG 120
           TS+PP S KPEP+P+   PPKVS+KF++ILAFSGP PERINGRLAMIGFVAALAVE  KG
Sbjct: 61  TSIPPSSLKPEPTPSPSPPPKVSTKFTDILAFSGPGPERINGRLAMIGFVAALAVETLKG 120

Query: 121 QGLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLG 180
           Q +FEQI NG GIPWFVGTSVVL++ASLIPL RGVSAES SKG+MNS+AELWNGRFAMLG
Sbjct: 121 QDVFEQIANG-GIPWFVGTSVVLTLASLIPLFRGVSAESNSKGIMNSNAELWNGRFAMLG 180

Query: 181 IVALAFTEYVKGGSLV 194
           +VALAFTEYVKGGSLV
Sbjct: 181 LVALAFTEYVKGGSLV 193

[Close]

BLAST of Tan0004143 vs. NCBI nr
Match: XP_004134120.1 (early light-induced protein 1, chloroplastic [Cucumis sativus] >KGN56941.1 hypothetical protein Csa_009586 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-66
Identity = 144/195 (73.85%), Postives = 169/195 (86.67%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +I ++++TR   +T+T+RLL AA+RPC R  A+FRVRC AEEDQREQ IPS 
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPS- 60

Query: 61  TSVPPLSPKPEPSPAPPK--VSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQ 120
            S+PP  PKPEPSP+PP    S+K ++ILAFSGP PERINGRLAMIGFVAALAVEV+KGQ
Sbjct: 61  -SIPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQ 120

Query: 121 GLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGI 180
            +FEQI NG GIPWFVGTSVVL++ASLIPL +GVSAES SKG+M+S+AELWNGRFAMLG+
Sbjct: 121 DVFEQIANG-GIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGL 180

Query: 181 VALAFTEYVKGGSLV 194
           VALAFTEYVKGGSLV
Sbjct: 181 VALAFTEYVKGGSLV 192

[Close]

BLAST of Tan0004143 vs. NCBI nr
Match: KAA0049329.1 (early light-induced protein 1 [Cucumis melo var. makuwa] >TYK17229.1 early light-induced protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 3.1e-64
Identity = 141/195 (72.31%), Postives = 167/195 (85.64%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +IP+S+++R   +T+T+RLL AA+R C R   +FRVRCTAEEDQREQ IPS 
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTAEEDQREQAIPS- 60

Query: 61  TSVPPLSPKPEPSPAPPK--VSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQ 120
            S+PP  PK EP+P+      S+KF++ILAFSGP PERINGRLAMIGFVAALAVEV+KGQ
Sbjct: 61  -SIPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQ 120

Query: 121 GLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGI 180
            +FEQI NG GIPWFVGTSVVL++ASLIPL +GVSAES SKG+M+S+AELWNGRFAMLG+
Sbjct: 121 DVFEQIANG-GIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGL 180

Query: 181 VALAFTEYVKGGSLV 194
           VALAFTEYVKGGSLV
Sbjct: 181 VALAFTEYVKGGSLV 192

[Close]

BLAST of Tan0004143 vs. NCBI nr
Match: XP_022955473.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955474.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955475.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 254.6 bits (649), Expect = 6.8e-64
Identity = 140/194 (72.16%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +I ASS++R+ C+T  +RLL AA+RP  RR A+FRVRCTAEEDQRE   PSS
Sbjct: 1   MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 60

Query: 61  TSVPPLSPKPEPSPAP-PKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQG 120
            S+P  SP+P PSP P PK+S+K ++ILAFSGPAPERINGRLAM+GFVAALAVE AKGQ 
Sbjct: 61  VSLP--SPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQD 120

Query: 121 LFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGIV 180
           + EQIGNG GIPWFVGTS +L++ASLIP +RGVS ES SKG M S AELWNGRFAMLG++
Sbjct: 121 VLEQIGNG-GIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLL 180

Query: 181 ALAFTEYVKGGSLV 194
           ALAFTEYV GGSLV
Sbjct: 181 ALAFTEYVTGGSLV 191

[Close]

BLAST of Tan0004143 vs. NCBI nr
Match: XP_023527191.1 (early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023527192.1 early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 6.8e-64
Identity = 141/194 (72.68%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +I ASS +R+ C+T  SRLL AA+RP  RR A+FRVRCTAEEDQRE   P+S
Sbjct: 1   MAASAVMQSILASSVSRNACRTPASRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPTS 60

Query: 61  TSVPPLSPKPEPSPAP-PKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQG 120
            S+P  SP+P PSP P PK+S+K ++ILAFSGPAPERINGRLAM+GFVAALAVE AKGQ 
Sbjct: 61  VSLP--SPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQD 120

Query: 121 LFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGIV 180
           + EQIGNG GIPWFVGTS +L++ASLIP +RGVS ES SKG M S AELWNGRFAMLG+V
Sbjct: 121 VLEQIGNG-GIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLV 180

Query: 181 ALAFTEYVKGGSLV 194
           ALAFTEYV GGSLV
Sbjct: 181 ALAFTEYVTGGSLV 191

[Close]

BLAST of Tan0004143 vs. ExPASy TrEMBL
Match: A0A0A0LA49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 7.1e-67
Identity = 144/195 (73.85%), Postives = 169/195 (86.67%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +I ++++TR   +T+T+RLL AA+RPC R  A+FRVRC AEEDQREQ IPS 
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPS- 60

Query: 61  TSVPPLSPKPEPSPAPPK--VSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQ 120
            S+PP  PKPEPSP+PP    S+K ++ILAFSGP PERINGRLAMIGFVAALAVEV+KGQ
Sbjct: 61  -SIPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQ 120

Query: 121 GLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGI 180
            +FEQI NG GIPWFVGTSVVL++ASLIPL +GVSAES SKG+M+S+AELWNGRFAMLG+
Sbjct: 121 DVFEQIANG-GIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGL 180

Query: 181 VALAFTEYVKGGSLV 194
           VALAFTEYVKGGSLV
Sbjct: 181 VALAFTEYVKGGSLV 192

[Close]

BLAST of Tan0004143 vs. ExPASy TrEMBL
Match: A0A5D3D3B2 (Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00800 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64
Identity = 141/195 (72.31%), Postives = 167/195 (85.64%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +IP+S+++R   +T+T+RLL AA+R C R   +FRVRCTAEEDQREQ IPS 
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTAEEDQREQAIPS- 60

Query: 61  TSVPPLSPKPEPSPAPPK--VSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQ 120
            S+PP  PK EP+P+      S+KF++ILAFSGP PERINGRLAMIGFVAALAVEV+KGQ
Sbjct: 61  -SIPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQ 120

Query: 121 GLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGI 180
            +FEQI NG GIPWFVGTSVVL++ASLIPL +GVSAES SKG+M+S+AELWNGRFAMLG+
Sbjct: 121 DVFEQIANG-GIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGL 180

Query: 181 VALAFTEYVKGGSLV 194
           VALAFTEYVKGGSLV
Sbjct: 181 VALAFTEYVKGGSLV 192

[Close]

BLAST of Tan0004143 vs. ExPASy TrEMBL
Match: A0A6J1GV79 (early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457488 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.3e-64
Identity = 140/194 (72.16%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +I ASS++R+ C+T  +RLL AA+RP  RR A+FRVRCTAEEDQRE   PSS
Sbjct: 1   MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 60

Query: 61  TSVPPLSPKPEPSPAP-PKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQG 120
            S+P  SP+P PSP P PK+S+K ++ILAFSGPAPERINGRLAM+GFVAALAVE AKGQ 
Sbjct: 61  VSLP--SPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQD 120

Query: 121 LFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGIV 180
           + EQIGNG GIPWFVGTS +L++ASLIP +RGVS ES SKG M S AELWNGRFAMLG++
Sbjct: 121 VLEQIGNG-GIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLL 180

Query: 181 ALAFTEYVKGGSLV 194
           ALAFTEYV GGSLV
Sbjct: 181 ALAFTEYVTGGSLV 191

[Close]

BLAST of Tan0004143 vs. ExPASy TrEMBL
Match: A0A1S3AXH6 (early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483676 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.3e-64
Identity = 140/195 (71.79%), Postives = 166/195 (85.13%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +IP+S+++R   +T+T+RLL AA+R C R   +FRVRCT EEDQREQ IPS 
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPS- 60

Query: 61  TSVPPLSPKPEPSPAPPK--VSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQ 120
            S+PP  PK EP+P+      S+KF++ILAFSGP PERINGRLAMIGFVAALAVEV+KGQ
Sbjct: 61  -SIPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQ 120

Query: 121 GLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGI 180
            +FEQI NG GIPWFVGTSVVL++ASLIPL +GVSAES SKG+M+S+AELWNGRFAMLG+
Sbjct: 121 DVFEQIANG-GIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGL 180

Query: 181 VALAFTEYVKGGSLV 194
           VALAFTEYVKGGSLV
Sbjct: 181 VALAFTEYVKGGSLV 192

[Close]

BLAST of Tan0004143 vs. ExPASy TrEMBL
Match: A0A6J1ISC2 (early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480100 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.4e-62
Identity = 137/194 (70.62%), Postives = 161/194 (82.99%), Query Frame = 0


Query: 1   MAASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAEEDQREQPIPSS 60
           MAASA+M +I  SS+ ++ C+T  +RLL AA++P  RR A+FRVRCTAEEDQRE   P+S
Sbjct: 1   MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTS 60

Query: 61  TSVPPLSPKPEPSPAP-PKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKGQG 120
            S+P  SP+P PSP P PK+S+K ++ILAFSGPAPERINGRLAM+GFVAALAVE AKGQ 
Sbjct: 61  VSLP--SPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQD 120

Query: 121 LFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLGIV 180
           + EQIGNG GIPWFVGTS +L++ASLIP +RGVS ES SKG M S AELWNGRFAMLG+V
Sbjct: 121 VLEQIGNG-GIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLV 180

Query: 181 ALAFTEYVKGGSLV 194
           ALAFTEYV GGSLV
Sbjct: 181 ALAFTEYVTGGSLV 191

[Close]

BLAST of Tan0004143 vs. TAIR 10
Match: AT3G22840.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 191.8 bits (486), Expect = 5.1e-49
Identity = 113/196 (57.65%), Postives = 146/196 (74.49%), Query Frame = 0


Query: 3   ASALMHAIPASSSTRSTCKTSTSRLLSAAIRPCHRRVASFRVRCTAE---EDQREQPIPS 62
           AS  M ++ A   T  T K +T++L SA   P  +R     VRC AE    ++   P PS
Sbjct: 4   ASFNMQSVFAGGLT--TRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPS 63

Query: 63  STSVPPL--SPKPEPSPAPPKVSSKFSEILAFSGPAPERINGRLAMIGFVAALAVEVAKG 122
           +++  PL  SP P P P  PKVS+KFS++LAFSGPAPERINGRLAM+GFVAALAVE++KG
Sbjct: 64  TSAAQPLPKSPSP-PPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKG 123

Query: 123 QGLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRGVSAESKSKGVMNSDAELWNGRFAMLG 182
           + +  QI +G G+ WF+GT+ +L++ASL+PL +G+S ESKSKG+M SDAELWNGRFAMLG
Sbjct: 124 ENVLAQISDG-GVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLG 183

Query: 183 IVALAFTEYVKGGSLV 194
           +VALAFTE+VKGG+LV
Sbjct: 184 LVALAFTEFVKGGTLV 195

[Close]

BLAST of Tan0004143 vs. TAIR 10
Match: AT4G14690.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46
Identity = 95/162 (58.64%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 37  RRVASFRVRCTAEEDQREQ----PIPSSTSVPPLSPKPEPSP-APPKVSSKFSEILAFSG 96
           +R+A   VRC A+ D  ++    P  S+++ PP  P+  P P + PKVS+KF ++LAFSG
Sbjct: 33  KRIAPVGVRCMAQGDPIKEDPSVPSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSG 92

Query: 97  PAPERINGRLAMIGFVAALAVEVAKGQGLFEQIGNGSGIPWFVGTSVVLSVASLIPLLRG 156
           PAPERINGRLAM+GFVAA+A+E++KG+ +F QI +G G+ WF+GT+ +L++AS++PL +G
Sbjct: 93  PAPERINGRLAMVGFVAAIAMELSKGENVFAQISDG-GVGWFLGTTALLTLASMVPLFKG 152

Query: 157 VSAESKSKGVMNSDAELWNGRFAMLGIVALAFTEYVKGGSLV 194
           + AE+KSKG M SDAELWNGRFAMLG+VALAFTEYV GG+LV
Sbjct: 153 IRAEAKSKGFMTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193

The following BLAST results are available for this feature:

BLAST of Tan0004143 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93735	7.1e-48	57.65	Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P11432	1.5e-45	55.38	Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q94K66	3.3e-45	58.64	Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P14895	4.1e-35	56.58	High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum...	[more]
P14896	3.4e-34	60.17	Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum ...	[more]

BLAST of Tan0004143 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880321.1	3.4e-71	79.08	early light-induced protein 1, chloroplastic [Benincasa hispida]	[more]
XP_004134120.1	1.5e-66	73.85	early light-induced protein 1, chloroplastic [Cucumis sativus] >KGN56941.1 hypot...	[more]
KAA0049329.1	3.1e-64	72.31	early light-induced protein 1 [Cucumis melo var. makuwa] >TYK17229.1 early light...	[more]
XP_022955473.1	6.8e-64	72.16	early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_02295...	[more]
XP_023527191.1	6.8e-64	72.68	early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >...	[more]

BLAST of Tan0004143 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA49	7.1e-67	73.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1	[more]
A0A5D3D3B2	1.5e-64	72.31	Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1GV79	3.3e-64	72.16	early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A1S3AXH6	4.3e-64	71.79	early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1ISC2	1.4e-62	70.62	early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Tan0004143 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22840.1	5.1e-49	57.65	Chlorophyll A-B binding family protein	[more]
AT4G14690.1	2.4e-46	58.64	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 93..134 e-value: 5.5E-5 score: 23.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..77
None	No IPR available	PANTHER	PTHR14154:SF5	EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC	coord: 1..183
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..183
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 63..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004143.1	Tan0004143.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane