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Tan0004114 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGGGAACTCTCTGATCTTTCCCAAGTGATGGTTTAGCTTGTATTTGATTTCAGATTAAATTTTCTGCCTAGAGTCTATGTATTATGGGTTAGCTTAATACCGGTCTTAGCTTCCATTTTTCCTTGCCCATTTATTGACTTTTTTTTTTTTCATGCTAATTGATGATTAAATACTGCAACTTAACTATTATGCTCTGTTCTCATTAGGTATACAATGGAGCGGCCTCGGTTCACTGATCATCTTGAGGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGTAAGATCCAAAGCCAAACCTAGGAGCAGCCCTTTCTTTATCATGTGTACTTTAAATCCTACCTGAACTTGACCTAAATTTGGAAAATTGTTTTGTAGGGCACCTTTGTTTTGCAAGATAATCGATTTCGCTGGCTTACACGTATGTCGATCGATCCTCCGCAAAGTGAATCACAGGAAAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCGACAAGTATGCATCTATATTTCCCATGCGGAATCATAAGGGGCGCTCTCTCAAATTTGGGAATTCCTTGTGCAGTTTCTGCTGATATTTCAAATCTTCCTGCATGTAAGTAATCATACTTCGATCTTGATTCCCACTTTCCTTCTTCTGAGTTGAGAAATGAGAATGATCTGCTGTAATTGCTTGTATTATGAAATAGGTTCATTTGTTGTTCGTATAAAGGCCTGACGAGAAGTGTATCAAAAAGTAGATTTTATCTCTGTGGGTTATGAAGATGCGCTAGGTCCTCACCACTCTCTCCAGTTGTAATGGTTCCTTTCTTTCTTCTTTTTTGTTTATTTTTTGCCATCTCTGTCTCTTTCTCCTCTCCTAAGCCATTGAAACTTTGAGCACAAAAATCTGTCGGACAAACGTTTGTGTATGCATGAAAGTCAATATCAGTTATTTTTCAGATTTTTTTTTTTTTTTTTGAGTACATCAACAATTGGGGTGGGGGGCTTCGAACTCATGACCTCTTGGTCATGAGTCATACTTGATGTTAGTTGAGCTATGTTCTTGTTGACCTATTTTTCAGAATTTAGAGATTGTAGACATATGTTAAGACTTATTATATTGTACTTTTTAGGAGAATGAATTCATATCCCATGATGGTCACGTATGTAGGAGGTTAAAATCTTATTGAGTTTCTACCTAACTAAATATTGTAGAGTCAAATAGCTCATGAGATTAGTAGACCTATGTAATAAGCATAATGAAATACTTATAGATATTTAAAAAGGCTATATTGTGTACATTTTTAACCATACAGTAAGAAGGCGA GGGGAACTCTCTGATCTTTCCCAAGTGATGGTTTAGCTTGTATTTGATTTCAGATTAAATTTTCTGCCTAGAGTCTATGTATTATGGGTTAGCTTAATACCGGTCTTAGCTTCCATTTTTCCTTGCCCATTTATTGACTTTTTTTTTTTTCATGCTAATTGATGATTAAATACTGCAACTTAACTATTATGCTCTGTTCTCATTAGGTATACAATGGAGCGGCCTCGGTTCACTGATCATCTTGAGGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTTCGCTGGCTTACACGTATGTCGATCGATCCTCCGCAAAGTGAATCACAGGAAAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCGACAAGTATGCATCTATATTTCCCATGCGGAATCATAAGGGGCGCTCTCTCAAATTTGGGAATTCCTTGTGCAGTTTCTGCTGATATTTCAAATCTTCCTGCATGTTCATTTGTTGTTCGTATAAAGGCCTGACGAGAAGTGTATCAAAAAGTAGATTTTATCTCTGTGGGTTATGAAGATGCGCTAGGTCCTCACCACTCTCTCCAGTTGTAATGGTTCCTTTCTTTCTTCTTTTTTGTTTATTTTTTGCCATCTCTGTCTCTTTCTCCTCTCCTAAGCCATTGAAACTTTGAGCACAAAAATCTGTCGGACAAACGTTTGTGTATGCATGAAAGTCAATATCAGTTATTTTTCAGATTTTTTTTTTTTTTTTTGAGTACATCAACAATTGGGGTGGGGGGCTTCGAACTCATGACCTCTTGGTCATGAGTCATACTTGATGTTAGTTGAGCTATGTTCTTGTTGACCTATTTTTCAGAATTTAGAGATTGTAGACATATGTTAAGACTTATTATATTGTACTTTTTAGGAGAATGAATTCATATCCCATGATGGTCACGTATGTAGGAGGTTAAAATCTTATTGAGTTTCTACCTAACTAAATATTGTAGAGTCAAATAGCTCATGAGATTAGTAGACCTATGTAATAAGCATAATGAAATACTTATAGATATTTAAAAAGGCTATATTGTGTACATTTTTAACCATACAGTAAGAAGGCGA ATGGAGCGGCCTCGGTTCACTGATCATCTTGAGGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTTCGCTGGCTTACACGTATGTCGATCGATCCTCCGCAAAGTGAATCACAGGAAAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCGACAAGTATGCATCTATATTTCCCATGCGGAATCATAAGGGGCGCTCTCTCAAATTTGGGAATTCCTTGTGCAGTTTCTGCTGATATTTCAAATCTTCCTGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSIDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA Homology
BLAST of Tan0004114 vs. ExPASy Swiss-Prot
Match: Q32L78 (Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6B PE=2 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 4.7e-26 Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy Swiss-Prot
Match: Q86SZ2 (Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPPC6B PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 4.7e-26 Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy Swiss-Prot
Match: F1QMV3 (Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc6b PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.4e-25 Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy Swiss-Prot
Match: Q9D289 (Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trappc6b PE=1 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 5.2e-25 Identity = 57/114 (50.00%), Postives = 75/114 (65.79%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy Swiss-Prot
Match: Q78XR0 (Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trappc6a PE=1 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 3.3e-19 Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 0
BLAST of Tan0004114 vs. NCBI nr
Match: KAG7023966.1 (Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 243.0 bits (619), Expect = 1.3e-60 Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of Tan0004114 vs. NCBI nr
Match: XP_022961590.1 (trafficking protein particle complex subunit 6B [Cucurbita moschata] >XP_022968804.1 trafficking protein particle complex subunit 6B [Cucurbita maxima] >KAG6590416.1 Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 243.0 bits (619), Expect = 1.3e-60 Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of Tan0004114 vs. NCBI nr
Match: XP_023545328.1 (trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo]) HSP 1 Score: 241.5 bits (615), Expect = 3.7e-60 Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0
BLAST of Tan0004114 vs. NCBI nr
Match: XP_022154611.1 (trafficking protein particle complex subunit 6B [Momordica charantia]) HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59 Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0
BLAST of Tan0004114 vs. NCBI nr
Match: XP_038878648.1 (trafficking protein particle complex subunit 6B [Benincasa hispida]) HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy TrEMBL
Match: A0A6J1I0Q5 (trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=LOC111467932 PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.1e-61 Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy TrEMBL
Match: A0A6J1HCN4 (trafficking protein particle complex subunit 6B OS=Cucurbita moschata OX=3662 GN=LOC111462123 PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.1e-61 Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy TrEMBL
Match: A0A6J1DP88 (trafficking protein particle complex subunit 6B OS=Momordica charantia OX=3673 GN=LOC111021834 PE=3 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59 Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy TrEMBL
Match: A0A5D3CG65 (Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003390 PE=3 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59 Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Tan0004114 vs. ExPASy TrEMBL
Match: A0A1S3BP90 (trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59 Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Tan0004114 vs. TAIR 10
Match: AT3G05000.1 (Transport protein particle (TRAPP) component ) HSP 1 Score: 209.1 bits (531), Expect = 1.9e-54 Identity = 98/120 (81.67%), Postives = 112/120 (93.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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