Tan0003997 (gene) Snake gourd v1

Overview


Name	Tan0003997
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	pre-mRNA-splicing factor CWC25-like isoform X2
Location	LG01: 5853505 .. 5863469 (+)
RNA-Seq Expression	Tan0003997
Synteny	Tan0003997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAAATGTGGCATTTACATTTTAGGTATTAAAGCGAAAAAACGAAAAAAAGAAAAAAAAAATTGAGAAATGCAGCAAAGCAATAGCCAATTATCAGTTTATCACTTCCTTCATCTTCCCGCGAGACGAAGCCCTAACTTCCCACTCTCTCTGTTTTTCACTTTCTTGCTCTATTTTTTCCTCTGACACAAACAACAGCGGGAAAGCAAATGTCACGTCGTGAAGCTCGGGAATCCGACTCCAAGCGCTACCGTTCCAGATTCGATAGAGATCCCAGGTATCCGATTGCATCCCCTCATCTAAATGTCTCAAGTTTATTAGCTGCTGAAGAATTTGTTCTTTTTAAATGGATTTTTGTTGCGGTAGCTTGTGAGATTCCGGAATTTTCATGTTTTTCCCTCAATATGCTCGAGTGTCGGTGCGTGTGTTTTTATGTTTGTTTTGATGATATCGTAATTGGAAAGGAATGCTGTTCATTAAGCGTTCTACTTCGTATTCGATTATGGTCTTTCATTTTTGTTTGGAAAGTAAATTTGTTCAATTTGACTTGTCTATTGTTACACAGTTGATTGATATGTTATGTTTAAATGGGTCTCGAGGAATTGGGTTTTATGGAGCTCTTTTGTATGGTAGGATGAACTAGTTCATTAATTTTGGAGCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTGTTTTTTTTTTTTTAAGTTTGTAAATTTGAACTGTAAATGGTACTAGTTCACCAGCTCTTTTGTATGAAGGACGAACTAGTTCATTTATTCTTGAGATTTTTGAAGATGGAATTATAATCTACAAGTTACCATCTTATGTTGATTGGACTCTCTTTGGGTCCTTGCTCCATTATTTTCTCATTAGTAATGTGAGGAAAAAAAACCCGTAAATTTGAGATTGGACATTGTATTTTGAAAGGCTAATGTTTGTTCTTAGCTAGGAAACATGGACACATGTTTGACATGGATTTGTATGGACATGTGACATTTATCTGACACACCAAATTCTAGAGTATCCAACTTTATATATCCTTTTTTTTTGGTAATTTCGGATATATATAAAATACAGTTGGACACACTGGAGATAAACATGCCCATTTTGTTTTTGGCTGAAAAAATAAAACACAGAAAGAAAACTACTTATATAAAATCACGCACATCTTCCTTTCCATTAGCCATAGGAAAGAGACAAGCCAACTTCCTTTCTAAAACTTCTCTTCCTTTGAGATTGCAGATAGAGGGAGGAATCAAGTATTCCTCATAAAGAGTCAATGAAGGATATAGGGGGATAGTTGTTTTGTTTGGTTGAAAACGCGCAAATATAGAGAGAGAGAAAAAAATTGAGTTGGTTTCTACTAATTCTTCAAAAAAATAATTGATCAAGGGAGAGTAGTGGATTTCTTTGACTGGAATTGTAAAAAGAGTCGAAGAGATCCACAAATTCACACAAGTAATAGTGGTTTTTTTTCCTCTCTCTCTTAGGGTGCGTTTGGATCGTAGAGTTGAGTTGAGTTGAGTTGAGTTGTGCAGAGTTGAGTTGAGTTGAGTGCAGGAAATCTGTGTTTGGGGTGCAGAGTTGAGTTGAGTTGTTGCAGGAAATCTATGTTTGGGGTGCAGAGTTGAGTTGAGTTGTGCGGAGGTATCTGGTGCAATTTTTTTTTTAAGATCAAATAATCACTTTTTATCTTACTGATGGTTTTAAGATCAAATAATCAGTTTTTATCTTCCCATCATTGATGATACAATCATTCATGACAAAAGAATTAATGACATGCTATCAAATCTTATCTCCCATGCCCCCAAAAAATTAGAGTATACGAAAAATATTATCGTTCGCAAAATATATCTAACGAAATAAACATGAAGTGCCTGGGTCATCTTGGTTTAGTAAAAGATGGGTGAAGTAGGTGTTCAACCAGTCCTACCAAGAAGATGCAAGCAATATCTCTTCTTGGATTGTGATGGGACTTGGAAGAAGCAACTCGTCTTTTGGATGTCCGCGACTAAGGGGATCGTCCTTGGTCAACCCTTCTATTGCATACAGTTGGTCTACAACATCTTTACGTCTAGCGGATTCCATTTCATATTTTTCTTTTCTTAATCACTCCCCTGTAACTTTTCTTTTCGTTTCAGCAATGGAACTTATGGATAATTCAACTTAAACCCCATTTTTTTTGTTACACCCGTAAAATCAAATGCATTAATTGTATTTGATTTAAATTTGAATTTTTGGATAATCGGATAAGGATTATGAATATAGAGATTTTTTAGGAAAGGGTGTTTTAAAGTCTAAAAAGGATTAAGATTTATGTTTTAAAAAAAAGATTAAGATTTCTTTTTTTAAAAAAGAGGATAAGGCTTTCCTTTTTTAAAAAATAGGATTTCTTGTTCTAAAAAGGATTAGGACTTTTTGCTACCTATTTAAACTAGAGTAATTACAACTTAAATGGTGCACTTCAAAACTCTCCTCTTCTTCTCCTTCTTTTCTTTTCATATCACTCTTCATCCTGCCGGACAATAACGCGGAGTTTCGCCGGAAAGTCGTCGGGCCATCGCCGGAAAATTGTTGGACCACCGTCGGGTCACCGCTGGAAGTTGCCGGAAGCCGTCGGACCACCTCCGAAAGTTTCCGGACCAACGTTGGAAGCCGTCTGACCACCGTCGGACCACCGGAAGGGAATCAAGATTTAGGAAAATTGGTGGAGAGGTGTGTGAATTGATTTTATGGGGAGATGTAAGGTGAGAAAATTGGGGGAGATATTTGGGGAGTGGGGAGTTGAGAACTCAACCCAACTCAATCTCCCAAACACTGGGTTGGTTTTTTAAACCAACTCAACTCAACCCATATCAGTGGGCCAAACCTTAATGATTGACTTTATATATTTATCCCATCCAAACCAAAACAAATCACCAAACATTATTTCTTTTCTATTTTTTTTTTAACAAATGCACAACATATTTTCTTTTCTTTTTTAAAATAAAAATAGAACTTATTTTTCTTGATTATTTGATTTATTGGTCGACTCACATTAAATTTAATTGTTAGGTTGACATCTTCTTCATCTAGCAATAATGAATCAACTCCTTCTATTTCTTTGGTCTCTTGTAATGTTGAAGATGTGTAAAAGCCACTTTGGAAATGCCTAACCAAGCATCAAAGGTTGAATGAAGGGGGGTGGAAATTTATCTTGGAAATGTAATTTTTGTCATGCAAAGAAGAAAAGTTCTTACACAAGAGTTAGAGCTCACTTGTTAAGGATAAGCAATCAAGGAGTCAGAATGTATCCAAAGATCACTCCTTGAGATATTGCTGACATGCAAAAACTTGAAAATGAAGCAAATGCTTTATTTTTTTTTTGATAACCGGGTGCCGAAGCTTTGGGGCACCCACGCCTACCCCAAGGCCTCAACTTAGGAGATATCAAGGGTTTTTATTTATTAAGCTCACCTGAGGGCTTGAACCTGAGGCCTCTAAGCCAGTATAATCAAGAGACCCCAAGCCCTTACCAACGGGGCAAAGAAAAGCTCCTAAAAATGCTTCTCTACCACTTTCGATGTCATCTTTTGGTGGTTTGAGTAGTTCTCCTCTTACTAGGATTGATCCAAAGAAAAGGAAGGGTAATACAAGTTTACTTGAACGATCATTTGTTGAGGCATCACATGACCAATTACATGCACACAGTGTTTTTAAAGGCTCAAGGCGCCATAGCCCTCTGCCTAGGCGCAAGGCACACCAAAAGACGGGAGCTTTTTTATCTAAGGCGCACTATATATGAAAAAAAATAAAAAATATATATGTATACATATACAATAAGAAAAAACTCTTCATGGGATGAAATTAAGTTTTAACCAAGGAAAATAAGTAAAAGAAATAAGGTTCAACTTTCAAGCATTAATGTTTGAACATAGAGATAATAGATACTCTATTAAAAAACATGAAACAATACAACACTAATAAATTATAAACACGACAAGATCAAAAGCCTTAAATATCAATCTCTTCTTCACTAAATAGATCTTCTTCAACCCCATTCTCTTCATCATTGGAGAAAAAAAAGGAAAGAGAGGCCGAGAGATAGTCTGAAGAAAAAGAAAAAAAACAGAAGAAAGTGAAAAAGAAAAGAAGAAGAAACGGAGAAAGAAGAAAAGGAAAACGAAAAGAAGAAGAAAAGGAAATAGAAAAGAAAGGGAAGATGTCAGACAGTCGGAAGAAGGGGACGGAGAAAAGAAGAAGAAAAGAAGAAGAAAAGGAAAAAGAAAAGGAGAACTTACCACTCAGCTTGAAGGAGAATCGGAGAAGAAGACATAAAGTTCCTCCACTGATTTTAACGATGTTAAACCCTAAATGAAATGAGTTTATTATGTTTTGTGTTTTTTTTTAAATAGATATTTAAAAATACATAAAATGAAAAAAAAAAAACTGAAGAAGCCCCAGAGGCGCGCGCCTTCTTCTTCGAGGCGAGGCGCTGAAGCTGCGCCCCGCGCCTAGGCGCGCGCCCCAGATGACTTTTTAAAACACTCCATGCACATATGGCTAGAATGTTTTATTCTTATGGTTTGCTTTTTCATTTTGCAAAGAATCCACATTTTATAAGTGTCTTAACTTATGCCACAAATAATTTGTTGTCGGGATAGGTGCCCCCTTGATATAATTTGTTGAGGAAAAATCTTCTTCAAAGAGAAAAGGAAAATGTTCAGAGACTGTTGCAACCTATTAAAAGCACATGGAGTGAGAAAGGTGTGAGTATTATGAGTGATGGATGGGGTGAACAAACACCTTCGATTAATTTCATGGCTATTACTGAAGGTAGACCAAGTTTTCTAAAAGCACTGGAACACTTAGGTGAGACCAAAGATAAATATCTTATTGCAAATTTGATGATGTCACTAATGAGGTGTTTGGTCATCATTATCAAAATGTGGTCCAAGTGATCACTGATAATACTCCTAATTGTGAAGGTTCGGGTCAAATTATTTAAGAACAATTTCCAATGATTTCTTGGACACCATGTATAGTACATTCACTCAATCTTGCCTTGAGGAGTATATGTGCCGCAAGAGATGTTGAAAACAACCAACTTTTAAATGAGGAATGTAATTGGATCTTTGATATTGCTGATGATGTGGTGCTGGTAAAGGATTTTATTATCAATCATTCTAGGAGACTCGTCATATTTAATGAATTTGTATCTTTGAAATTACTTTCTGTTGTAGAAACATGTTTTGCGTTAGTTATTGTTATGTTCAAGAGATTTAAACTCATTAAAGGTGGTTTGCAAGCTATGGTTATTAGTGACAAATGGACATGTTATAGAGATGTTGATGGGAAAAAAGCAAGGCAAGTGAAAGATTTGGTGTTAAATGACATATGGTGGGACAAAATTGATTATATTCTTTCCTTCACTTATACGTGACATGATTCGAGCTTGTGATTCAAACTTGCCTTGTCTTCATTTGGTGTATGACATGTGGAAAACTATGATTGAAAAGGTGAAGACGACCATACATAGACAAGAAGGAAAGAATCAAGATGAATTCTCCTCTTTCTATAATGTGGTACACAATTCTTATTGATCATTGGAACAAGAATAATACCACACTCTATTGTTTGGCACATTCCTTGAACCCAAGGTACTTCGTAGTAAGTACATGTTTTTATTCTTATTCTAAGCGTATTATAGGAGTTTAACATTTCCTAAACATATATTTCAGTACTATTGTCTAGAATGGCTTCAAGAAGACAACCATCGAATGCCTCCACATAGAGATTTGGAAATTACTCGAGGGGAATGAAATGTCTTAAGAAATATTTTAGCATTGGGGAGGAGCGTACAAAGTGCTTACAAAATTTGCTAAATTTTGTTTAATGTCAATAGATTTTAGTGATTACAATTCCATACACGATAGGTATCATATGGATTCTATAAGTTGGGTTATCCATGGTATGCGTGCACCAATCCTTCAATCATTAGCTTTGAAGCTACTTGTGCAACCTTCTTCTTCCTTGTGTTGTGAGAGAAATTGGAGCCGATACTCATTCGTTTACTCTATTAGGCATAATAAGATGACACCGTAACGTGCAAAAGATTTGATATTTGTGCATAGTAATCTTCGTCTTTTGTCTAGAAAAACTCCATGTTATTTGATAGGGATACTGGAGGGGATTCATTTGATTCTTTTGAGAATGTTGGAATACTTGAAGTAGCTAACTTGTCATTGGATGAACCGAATTTGGAGGCCATGGTTTTTACTGATGTTAGTGCAGATGGTAGAGGTGATAAAGATTGAGATGAGAGCTTTTAACTTCATAGGAAGATGAATTGTTCTAATTATTCACTTTTTACTCTCTAGTTTGTATTGTTAACTTTGTTGGACAATTACATACTATGCTATTGTCAACTGACTTGGCCTTTTTGTGTTCTTAGTGAAACACGTTTTTGGTTTTTATGAATGCCAACGTTGTGTCTTTTATCTAGTTTGAAATATTAAATATATCAATACATACACATATATAAAAAATGTGTCCCAATGCGTCCATGTCCTATTTTATAGAAATTAACGAGTCGCCGTGTTCATATCATTTCTCATGTTGGATGTATGACCCTTGTCTGGATCTGTGCTTCGAAAGTTCTTAGGTGCGAATGGATACTCAAGTATTTACGTTGGTGGTCACTGGTGAAAGCTCCTTATATATCGTTTTTGATATTACCTTGTTTATTTCCATGTTTATTTATATTTTATGGAAATGTCACATGTGCTTGATTGCTCACATGTATTTTGAAGTGCTTAGACTCTGAAGTGTATGCTAATTTGTATTTAAAGCGGTTGGTTGTTGATTGTTGAATGTAGGAGTGAAAATTGTACTTTGGCCAATCAATTTAGAATACACATTTCTTTAGTAGTTTACATTATTTGATCAAATGAGCATTCAGTGGAGAGGACCTACCTATTCTTAGAAATAGGTTGCTTGTATAGATATATTTCTAGTTCCAATCTATGAAGAACATGTACTTTGGTTGTTACCAAAGAAATGACCGGACAATTGCTTTTGTTATAAAAGCCCTTGATGTCTCTGGTTTTGGGTCTTGGAGCGGGCGTGGGTGCCCCTGAATATAGGAGAGCAAAGCTTCGACACTCCGTTATAAAAAAATTGCTTTTGCAATGCTCAGTCTCGTAGTTGCTTATGTGTATTAATTCTAGTTTCAAATTACATCATGGTTTTTTATGGCTACTTGGTAATATGTCGTTGTTATCTGCCCTGCATCATGCCAATTAAATTTCCCCTAGTTTCAAAATGGCTAAACACAAATATGATGTTTCACTTTCTTGCTTAGTCAAAAGTGAGGGCTCTGAAGAGAAATACGTGATCTTATTTGGATATCCCAGTAAAAAGATGGTTCCATTTTTTTGCTCCAATTGAATTCAAAATAATACTTCAGATTGAATAGGTGATTAATGCATTTAAGTATCATCTGATACTTAATCATGGAACTCTAATATGACTTAAATATGCTACTTATTGTTACTAGTCCGAAGCGGTCAAGGAGGGACAGGAAACCATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGAACGGGATCAGAAACATGAGCTGCGACACGAGGGGCAAGATATAATACCTCATGAGTCTTCATTAGCACTTGATTCTCATCCAGAAGGTGGGGTTAGCAAAGGAGCAAACAGGAACAGTGATGGGAGGGATGGAGGGACTAAACATTCATTGAATCCCACTGAAGTACCACGATCACGATCTTATTTTCAGGTTTGTGCTACATTAATTTTCAATTAATTTTGATAATTTCTTTCTTTTTGGTCACGATCACGATCTTTAGTTTTTCAAAAATAAAAGTAGCATGACTCTAGTTTGGTCGCAGTCAATGATTTTTTGAAGTGAAATGAGGGATTTTTTTAGAAGATAGCAAAAAAAAAAAAAAAAAGGCCATAAAGCCTAGGCTTGCACTTTGATGTGGGTCACCTCAGTAAGGTGCAACTTGCAAGGCGAGGTGCTTCAGCGACACTCTGCACACTTTTCAAAACTATGTTGTAATTTGTAACATGCTTTATGGCTTATGAAGGATATGTTTGTTGGGTCAAACAAATATTAATGTATTTTTTGCTATCTTATATTTAGATAGCTGTGGAATTTCATCATTCGTATTGATAAAATTAAATACCTTAGCTCAGTAATAATTCTCTCTGTCTCTCTCCTCCTGTTTTTTTCCATGCTTTGTTGCTATTTAGATTACCCCACATTTTTGCTGGGCTGATGTAATTGGAATCTTGTTCAGCCCTGTGCCTTCAAGTGCATCCGTGTATATAACTTCTTAGGCTTGCCTGTGCATGTCTTATAACAGCACGACGAACGTGGTAATGCCGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGTGGTGGGTTTCCTTACTCCATTTTATGCCCCAATTCCAACTTTTTTTGAGTTCTCTTCCTTTTTTTTCTCTTGTGCAACGTCACGCTGTTTAGTCTATTCCTTAACTAATCATACCTATTAAGCATGTATTATTATTCTTATTATATCGACTCTCATAAATATTATTTTAAATATTTGGAGCGGTTAATAGATACTATTGTCTTTGTAGTAAATGCATGTATCCGTTTGTTCCCTATAGTTCTAGTGTCGAATTGAAATGAAGAGAGAGAAACTAATGAAGTTTTGAAATGGTTTACTTTTTCCTTCATCTTAAATAGATATGGACTTCGGAGGAATTAATTTCTACCGGTGCCAAAAAGGCCACATATAATGTTGTAGAGGATGCGTTCTTATTTTTTTCACTGTTGCCAAAATGTTATATATACAATCTTCTAGAGGTCACGTTTTTTAATCTAGACTTTTATAGTGACAGTGTCTTGCATGGGAAAATTTAGAATCTCTCTTCAACCTTTCCATTCTTGCTTCTCCTCTCATGATATAATATCTTCGTTTTCTTTTTTCTTTTTTTCTTTTTTAGAGCGGGGCTGGTGGAAGGATTCAAAGGAACAGGATAAGGATAGCGATAGGGCATCTGGAAGGACAGCAACCTACAATTCACAGCGAAGAGATGAGATACCACAAACCACGAGGGAGGATAATCACACAAGGACCCGTGACGGGTCCTCGAAACTGGAGGTTGACGCGCCAGCTCCTGCTCGGAAAAGGCCTGCATTTAGAGAGAAGAAGATTACAGTTGACAATGAAAATGTTGAGAAAGCAGGTATGACATCAGAGAGTAAGAAATCGAATGATCCACACCAGCCTCAGAACGGAAGGGAACGGAGAGAAGAAAGAGGCCGTGACACTCGTCATTCGGAGAAACTTAATAAACATGTTACTGGAGACATGGCTACCAAGAGGGATGAGATGAAGAGAGGAGGCTACCCGGTGAGAGAAAGGTATGGCAATGGAGGTGGTGGTGGGAATTACAGGGGAAGAGACAGATTTGGTGGGAGGCAAGGATACCGAGCTGGTGGTACCCGTGTCGAGAAATGGAAGCACGACTTGTTTCACGAGGCTAACCGGAGTCCAACCCCGAAGAATGAAGAGGACCAAATTGCCAAGGTTGAAGCTCTTCTTGCTTCTTAGGATGGGATAATTAAGCCAATGAGATGCCTTGTGATTTTGTTGAGTCTTTAGTGAATATGCATTGACAAAAATATTCAAGCCTAGTGAAGCATTTGAAATGATGTAGCTTGTGTTTTTCTAAAACATCATCTCCTATTTGTTCTCTTGCTTCTTCTTGTTTTTTACAACTCAATGTAATTGAATTGCCTTATTCTATCAACCCAAACGAGCTACGGTTGTCGATCTTGAGCAGGTGGAAAACTAGTTTGGGAAGACATTTCTCTTTTTAGTTTCACCAACTTTATAATGTGATAGTTCAATTAATTAAAA

mRNA sequence

GTGGAAATGTGGCATTTACATTTTAGGTATTAAAGCGAAAAAACGAAAAAAAGAAAAAAAAAATTGAGAAATGCAGCAAAGCAATAGCCAATTATCAGTTTATCACTTCCTTCATCTTCCCGCGAGACGAAGCCCTAACTTCCCACTCTCTCTGTTTTTCACTTTCTTGCTCTATTTTTTCCTCTGACACAAACAACAGCGGGAAAGCAAATGTCACGTCGTGAAGCTCGGGAATCCGACTCCAAGCGCTACCGTTCCAGATTCGATAGAGATCCCAGTCCGAAGCGGTCAAGGAGGGACAGGAAACCATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGAACGGGATCAGAAACATGAGCTGCGACACGAGGGGCAAGATATAATACCTCATGAGTCTTCATTAGCACTTGATTCTCATCCAGAAGGTGGGGTTAGCAAAGGAGCAAACAGGAACAGTGATGGGAGGGATGGAGGGACTAAACATTCATTGAATCCCACTGAAGTACCACGATCACGATCTTATTTTCAGCACGACGAACGTGGTAATGCCGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGTGAGCGGGGCTGGTGGAAGGATTCAAAGGAACAGGATAAGGATAGCGATAGGGCATCTGGAAGGACAGCAACCTACAATTCACAGCGAAGAGATGAGATACCACAAACCACGAGGGAGGATAATCACACAAGGACCCGTGACGGGTCCTCGAAACTGGAGGTTGACGCGCCAGCTCCTGCTCGGAAAAGGCCTGCATTTAGAGAGAAGAAGATTACAGTTGACAATGAAAATGTTGAGAAAGCAGGTATGACATCAGAGAGTAAGAAATCGAATGATCCACACCAGCCTCAGAACGGAAGGGAACGGAGAGAAGAAAGAGGCCGTGACACTCGTCATTCGGAGAAACTTAATAAACATGTTACTGGAGACATGGCTACCAAGAGGGATGAGATGAAGAGAGGAGGCTACCCGGTGAGAGAAAGGTATGGCAATGGAGGTGGTGGTGGGAATTACAGGGGAAGAGACAGATTTGGTGGGAGGCAAGGATACCGAGCTGGTGGTACCCGTGTCGAGAAATGGAAGCACGACTTGTTTCACGAGGCTAACCGGAGTCCAACCCCGAAGAATGAAGAGGACCAAATTGCCAAGGTTGAAGCTCTTCTTGCTTCTTAGGATGGGATAATTAAGCCAATGAGATGCCTTGTGATTTTGTTGAGTCTTTAGTGAATATGCATTGACAAAAATATTCAAGCCTAGTGAAGCATTTGAAATGATGTAGCTTGTGTTTTTCTAAAACATCATCTCCTATTTGTTCTCTTGCTTCTTCTTGTTTTTTACAACTCAATGTAATTGAATTGCCTTATTCTATCAACCCAAACGAGCTACGGTTGTCGATCTTGAGCAGGTGGAAAACTAGTTTGGGAAGACATTTCTCTTTTTAGTTTCACCAACTTTATAATGTGATAGTTCAATTAATTAAAA

Coding sequence (CDS)

ATGTCACGTCGTGAAGCTCGGGAATCCGACTCCAAGCGCTACCGTTCCAGATTCGATAGAGATCCCAGTCCGAAGCGGTCAAGGAGGGACAGGAAACCATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGAACGGGATCAGAAACATGAGCTGCGACACGAGGGGCAAGATATAATACCTCATGAGTCTTCATTAGCACTTGATTCTCATCCAGAAGGTGGGGTTAGCAAAGGAGCAAACAGGAACAGTGATGGGAGGGATGGAGGGACTAAACATTCATTGAATCCCACTGAAGTACCACGATCACGATCTTATTTTCAGCACGACGAACGTGGTAATGCCGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGTGAGCGGGGCTGGTGGAAGGATTCAAAGGAACAGGATAAGGATAGCGATAGGGCATCTGGAAGGACAGCAACCTACAATTCACAGCGAAGAGATGAGATACCACAAACCACGAGGGAGGATAATCACACAAGGACCCGTGACGGGTCCTCGAAACTGGAGGTTGACGCGCCAGCTCCTGCTCGGAAAAGGCCTGCATTTAGAGAGAAGAAGATTACAGTTGACAATGAAAATGTTGAGAAAGCAGGTATGACATCAGAGAGTAAGAAATCGAATGATCCACACCAGCCTCAGAACGGAAGGGAACGGAGAGAAGAAAGAGGCCGTGACACTCGTCATTCGGAGAAACTTAATAAACATGTTACTGGAGACATGGCTACCAAGAGGGATGAGATGAAGAGAGGAGGCTACCCGGTGAGAGAAAGGTATGGCAATGGAGGTGGTGGTGGGAATTACAGGGGAAGAGACAGATTTGGTGGGAGGCAAGGATACCGAGCTGGTGGTACCCGTGTCGAGAAATGGAAGCACGACTTGTTTCACGAGGCTAACCGGAGTCCAACCCCGAAGAATGAAGAGGACCAAATTGCCAAGGTTGAAGCTCTTCTTGCTTCTTAG

Protein sequence

MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRHEGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGNAGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTRDGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREERGRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRAGGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS

Homology

[Close]

BLAST of Tan0003997 vs. NCBI nr
Match: XP_023548006.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] >XP_023548014.1 pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 581.6 bits (1498), Expect = 4.3e-162
Identity = 307/338 (90.83%), Postives = 325/338 (96.15%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKRYRSRFDR+PSPKRSRRDRKPLEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREARESDSKRYRSRFDREPSPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD+ PHESSLALDSHPEGGVSKGANRNSD R+GGTK SLNPTEVPRSRSYFQHD+RG+
Sbjct: 61  EGQDVTPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEVPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPHQPQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKLSDPHQPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKRGGY VRERYGNGGGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of Tan0003997 vs. NCBI nr
Match: XP_022942670.1 (pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata] >XP_022942671.1 pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 579.3 bits (1492), Expect = 2.1e-161
Identity = 306/338 (90.53%), Postives = 324/338 (95.86%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKRYRSRFD++PSPKRSRRDRKPLEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREARESDSKRYRSRFDKEPSPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD  PHESSLALDSHPEGGVSKGANRNSD R+GGTK SLNPTEVPRSRSYFQHD+RG+
Sbjct: 61  EGQDATPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEVPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPHQPQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKRGGY VRERYGNGGGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of Tan0003997 vs. NCBI nr
Match: KAG6600285.1 (hypothetical protein SDJN03_05518, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030943.1 hypothetical protein SDJN02_04980 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 577.8 bits (1488), Expect = 6.1e-161
Identity = 305/338 (90.24%), Postives = 323/338 (95.56%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKRYRSRFD++PSPKRSRRDRKPLEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREARESDSKRYRSRFDKEPSPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD  PHESSLALDSHPEGGVSKGANRNSD R+GGTK SLNPTE PRSRSYFQHD+RG+
Sbjct: 61  EGQDATPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEAPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPHQPQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKRGGY VRERYGNGGGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of Tan0003997 vs. NCBI nr
Match: XP_022984546.1 (pre-mRNA-splicing factor CWC25 isoform X1 [Cucurbita maxima])

HSP 1 Score: 575.1 bits (1481), Expect = 4.0e-160
Identity = 304/338 (89.94%), Postives = 323/338 (95.56%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKRYRSRFDR+PSPKRSRRDRKPLEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREARESDSKRYRSRFDREPSPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD+ PHESSLALDSHPEGGVSKGANRNSD R+GGTK +LNPTEVPRSRSYFQHD+RG+
Sbjct: 61  EGQDVTPHESSLALDSHPEGGVSKGANRNSDEREGGTKRALNPTEVPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPH PQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKRGGY VRERYGNGGGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEE QIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEAQIAKVEALLAS 338

[Close]

BLAST of Tan0003997 vs. NCBI nr
Match: XP_023521659.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 567.0 bits (1460), Expect = 1.1e-157
Identity = 301/338 (89.05%), Postives = 320/338 (94.67%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRRE RESDS R+RSRFD + SPKRSRRDRK LEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREIRESDSNRHRSRFDGESSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD+ PHESSLALDSHPEGGVSKGANRNSD R+GGTK SLNPTEVPRSRSYFQHD+RG+
Sbjct: 61  EGQDVTPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEVPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPHQPQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKLSDPHQPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKRGGY VRERYGNGGGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of Tan0003997 vs. ExPASy TrEMBL
Match: A0A6J1FPJ0 (pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 1.0e-161
Identity = 306/338 (90.53%), Postives = 324/338 (95.86%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKRYRSRFD++PSPKRSRRDRKPLEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREARESDSKRYRSRFDKEPSPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD  PHESSLALDSHPEGGVSKGANRNSD R+GGTK SLNPTEVPRSRSYFQHD+RG+
Sbjct: 61  EGQDATPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEVPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPHQPQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKRGGY VRERYGNGGGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of Tan0003997 vs. ExPASy TrEMBL
Match: A0A6J1J5K1 (pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.9e-160
Identity = 304/338 (89.94%), Postives = 323/338 (95.56%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKRYRSRFDR+PSPKRSRRDRKPLEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREARESDSKRYRSRFDREPSPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD+ PHESSLALDSHPEGGVSKGANRNSD R+GGTK +LNPTEVPRSRSYFQHD+RG+
Sbjct: 61  EGQDVTPHESSLALDSHPEGGVSKGANRNSDEREGGTKRALNPTEVPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPH PQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKRGGY VRERYGNGGGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEE QIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEAQIAKVEALLAS 338

[Close]

BLAST of Tan0003997 vs. ExPASy TrEMBL
Match: A0A6J1FQX4 (pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 1.9e-152
Identity = 295/338 (87.28%), Postives = 313/338 (92.60%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKRYRSRFD++PSPKRSRRDRKPLEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREARESDSKRYRSRFDKEPSPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD  PHESSLALDSHPEGGVSKGANRNSD R+GGTK SLNPTEVPRSRSYFQHD+RG+
Sbjct: 61  EGQDATPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEVPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPHQPQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKR            GGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKR------------GGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 326

[Close]

BLAST of Tan0003997 vs. ExPASy TrEMBL
Match: A0A6J1JAV5 (pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 3.6e-151
Identity = 293/338 (86.69%), Postives = 312/338 (92.31%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKRYRSRFDR+PSPKRSRRDRKPLEEKLSRNSSSHVEDNK+RDQKHELRH
Sbjct: 1   MSRREARESDSKRYRSRFDREPSPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRH 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
           EGQD+ PHESSLALDSHPEGGVSKGANRNSD R+GGTK +LNPTEVPRSRSYFQHD+RG+
Sbjct: 61  EGQDVTPHESSLALDSHPEGGVSKGANRNSDEREGGTKRALNPTEVPRSRSYFQHDKRGS 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRS++S RGWWKDSKEQDK+SDRASG+TATYNSQRRDEIPQT +EDNHTRTR
Sbjct: 121 AGQVGRSFGRSSSSGRGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTR 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVD+ APARKRPAFREKKIT DNEN EKAGM SESKK +DPH PQ+GRERREER
Sbjct: 181 DGSSKLEVDSSAPARKRPAFREKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREER 240

Query: 241 GRDTRHSEKLNKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA- 300
           GRDTR+S+KL+KHVTGDMA+KRDEMKR            GGGGNYRGRDRFGGRQGY A 
Sbjct: 241 GRDTRYSDKLSKHVTGDMASKRDEMKR------------GGGGNYRGRDRFGGRQGYPAS 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           GGTRVEKWKHDLFHEANRSPTPKNEE QIAKVEALLAS
Sbjct: 301 GGTRVEKWKHDLFHEANRSPTPKNEEAQIAKVEALLAS 326

[Close]

BLAST of Tan0003997 vs. ExPASy TrEMBL
Match: A0A0A0KV12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.3e-145
Identity = 287/338 (84.91%), Postives = 301/338 (89.05%), Query Frame = 0


Query: 1   MSRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVEDNKERDQKHELRH 60
           MSRREARESDSKR+RSRFDR+PSPKRS+RDRK LEEKLSRNSSSHVEDNKERDQKHELR 
Sbjct: 1   MSRREARESDSKRHRSRFDREPSPKRSKRDRKTLEEKLSRNSSSHVEDNKERDQKHELRL 60

Query: 61  EGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERGN 120
            GQD+IPHESSLAL+S PEGG   GANRNSDGRDGGTKHS+NPTEVPRSRSYFQHDER N
Sbjct: 61  VGQDMIPHESSLALESKPEGGAGIGANRNSDGRDGGTKHSVNPTEVPRSRSYFQHDERSN 120

Query: 121 AGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRTR 180
           AGQVGRSFGRSATSERGWWKDSK+ DKDSDRASG++ TY SQ+RDE PQ  RED H    
Sbjct: 121 AGQVGRSFGRSATSERGWWKDSKDPDKDSDRASGKSLTYKSQQRDEKPQAAREDRH---H 180

Query: 181 DGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREER 240
           DGSSKLEVDA  PARKRPAFREKKITVDNE+ EK  M  ESKKSND HQ Q GRERREER
Sbjct: 181 DGSSKLEVDALTPARKRPAFREKKITVDNEDGEKVAMVPESKKSNDLHQIQEGRERREER 240

Query: 241 GRDTRHSEKL-NKHVTGDMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRFGGRQGYRA 300
           GRD R+SEKL NKH  GDMA+KRDEMKR GYPVRERYGNG GGGNYRGRDRFGGRQGYR 
Sbjct: 241 GRDPRYSEKLNNKHSNGDMASKRDEMKRVGYPVRERYGNGSGGGNYRGRDRFGGRQGYRT 300

Query: 301 GGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
            GTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALL+S
Sbjct: 301 SGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLSS 335

[Close]

BLAST of Tan0003997 vs. TAIR 10
Match: AT3G19650.1 (cyclin-related )

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-31
Identity = 130/342 (38.01%), Postives = 175/342 (51.17%), Query Frame = 0


Query: 2   SRREARESDSKRYRSRFDRDPSPKRSRRDRKPLEEKLSRNSSSHVED--NKERDQKHELR 61
           +RRE+R+SD +R+RSR DR+PSPKRSRRD KP  E++       V D  + E++ +  LR
Sbjct: 3   TRRESRDSDPRRHRSRIDREPSPKRSRRDGKPEAERVLSKKDLDVRDGTDTEKNSRQSLR 62

Query: 62  HEGQDIIPHESSLALDSHPEGGVSKGANRNSDGRDGGTKHSLNPTEVPRSRSYFQHDERG 121
                    ++ L LD+H   G  K + +   G    TK + + ++VPRSR Y QHD+R 
Sbjct: 63  ---------DAPLELDAH---GSRKDSEKKHSGHHETTKAAPHLSQVPRSRPYSQHDDRR 122

Query: 122 NAGQVGRSFGRSATSERGWWKDSKEQDKDSDRASGRTATYNSQRRDEIPQTTREDNHTRT 181
           + G+V     R  TS RG W+ S++Q   S+R +G     +  R+DE   + R D    +
Sbjct: 123 SDGKV----DRRPTSVRGSWRSSRDQ---SNRRAGDDEK-SQHRKDEDKSSWRHDRFRES 182

Query: 182 RDGSSKLEVDAPAPARKRPAFREKKITVDNENVEKAGMTSESKKSNDPHQPQNGRERREE 241
            D    L       +RKRPAFREKKI  +  N      T + K +N      N R + E 
Sbjct: 183 DDTQGAL-------SRKRPAFREKKIAEETGNNTDRTRTEDGKDTN-----LNNRRQNER 242

Query: 242 RGRDTRHSEKLNKHVTG-DMATKRDEMKRGGYPVRERYGNGGGGGNYRGRDRF--GGRQG 301
             R   HSE+  +   G D    RD+ +          G G        RDRF   GR G
Sbjct: 243 NWRSNTHSERHERPAMGRDRVWNRDDER----------GAGSRQSYQADRDRFNGNGRSG 302

Query: 302 YRAGGTRVE-KWKHDLFHEANRSPTPKNEEDQIAKVEALLAS 338
           +    TR E KW HDLF EAN+SP    EE+QIAKVEALLAS
Sbjct: 303 FSGSWTRNEKKWDHDLFDEANKSPAKATEEEQIAKVEALLAS 302

The following BLAST results are available for this feature:

BLAST of Tan0003997 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003997 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548006.1	4.3e-162	90.83	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] >XP_023548014.1...	[more]
XP_022942670.1	2.1e-161	90.53	pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata] >XP_02294267...	[more]
KAG6600285.1	6.1e-161	90.24	hypothetical protein SDJN03_05518, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022984546.1	4.0e-160	89.94	pre-mRNA-splicing factor CWC25 isoform X1 [Cucurbita maxima]	[more]
XP_023521659.1	1.1e-157	89.05	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0003997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPJ0	1.0e-161	90.53	pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J5K1	1.9e-160	89.94	pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FQX4	1.9e-152	87.28	pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JAV5	3.6e-151	86.69	pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0KV12	1.3e-145	84.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1	[more]

BLAST of Tan0003997 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19650.1	1.7e-31	38.01	cyclin-related	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..327
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..327
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	PANTHER	PTHR36364	OS03G0203000 PROTEIN	coord: 1..337

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003997.1	Tan0003997.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0005622	intracellular anatomical structure