Tan0003800 (gene) Snake gourd v1

Overview


Name	Tan0003800
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty1-copia retrotransposon protein
Location	LG02: 33177678 .. 33178207 (+)
RNA-Seq Expression	Tan0003800
Synteny	Tan0003800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGCAAATTACCGTTGTTGGTCTCAAAAGCTGTTGATCTTCCTCAAGCAATTAGAGGTTTGCTATGTCCTTACCACATAATGTTCTAACTGGGACCAATCCAAGTGCACTATTGTTACTGATCCGACAACATCAACTGATTCACTATCTGTCTCGGCTCAATCCAAACCTGCCTCCAAAACTGATCCTGAAAATTTGAGAAAGATAACAAGACAGTTCAGGGCCATCTACTCAACCACATGACAGATTCCCTGTTTGATCTGTTCGTCGTTCAGAAATCTGCAAAGGTCATATGGAGTACTCTCAAATCCAGATATGGTGGAGACGATGCTGGTAGGAAAAAATACGTCATTGGTAAGTGGTTACAGTTTGAGTTGATGGATGACAAACCAGTGATGGACCAAGTTCATGAGTATCAGAATCTTGTGGCTAATGTACTGTCAGAAGGGATGAAAATGTGTGAAATTCTTTAG

mRNA sequence

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGCAAATTACCGTTGTTGGTCTCAAAAGCTGTTGATCTTCCTCAAGCAATTAGAGGTTTGCTATGTCATATGGAGTACTCTCAAATCCAGATATGGTGGAGACGATGCTGGTAGGAAAAAATACGTCATTGGTAAGTGGTTACAGTTTGAGTTGATGGATGACAAACCAGTGATGGACCAAGTTCATGAGTATCAGAATCTTGTGGCTAATGTACTGTCAGAAGGGATGAAAATGTGTGAAATTCTTTAG

Coding sequence (CDS)

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGCAAATTACCGTTGTTGGTCTCAAAAGCTGTTGATCTTCCTCAAGCAATTAGAGGTTTGCTATGTCATATGGAGTACTCTCAAATCCAGATATGGTGGAGACGATGCTGGTAGGAAAAAATACGTCATTGGTAAGTGGTTACAGTTTGAGTTGATGGATGACAAACCAGTGATGGACCAAGTTCATGAGTATCAGAATCTTGTGGCTAATGTACTGTCAGAAGGGATGAAAATGTGTGAAATTCTTTAG

Protein sequence

MSIKSGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYVIWSTLKSRYGGDDAGRKKYVIGKWLQFELMDDKPVMDQVHEYQNLVANVLSEGMKMCEIL

Homology

[Close]

BLAST of Tan0003800 vs. NCBI nr
Match: KAA0058501.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 82/136 (60.29%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYVI---------------- 60
           MSIK S K+L DLSKLEPLDG NYR WSQKLLIF +QLEV YV+                
Sbjct: 1   MSIKTSNKILSDLSKLEPLDGMNYRRWSQKLLIFFEQLEVDYVLTTDPPSSDLPTTTSTS 60

Query: 61  -----------------WSTLKSRYGGDDAGRKKYVIGKWLQFELMDDKPVMDQVHEYQN 103
                             STL+SRYGGDDAGRKKYV+GKWLQF++ D KPV++Q+HEY+N
Sbjct: 61  FDPESSTGPPTTVAVTDQSTLESRYGGDDAGRKKYVVGKWLQFQMTDGKPVVEQIHEYEN 120

[Close]

BLAST of Tan0003800 vs. NCBI nr
Match: TYK07244.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 82/136 (60.29%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYVI---------------- 60
           MSIK S K+L DLSKLEPLDG NYR WSQKLLIF +QLEV YV+                
Sbjct: 1   MSIKTSNKILSDLSKLEPLDGMNYRRWSQKLLIFFEQLEVDYVLTTDPPSSDLPTTTSTS 60

Query: 61  -----------------WSTLKSRYGGDDAGRKKYVIGKWLQFELMDDKPVMDQVHEYQN 103
                             STL+SRYGGDDAGRKKYV+GKWLQF++ D KPV++Q+HEY+N
Sbjct: 61  FDPESSTGPPTTVAVTDQSTLESRYGGDDAGRKKYVVGKWLQFQMTDGKPVVEQIHEYEN 120

[Close]

BLAST of Tan0003800 vs. NCBI nr
Match: TYK30642.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 82/139 (58.99%), Postives = 93/139 (66.91%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NYR WS+KLLIF +QLE  YV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEFDYVLTTDLSSSDPSATTSTS 60

Query: 61  -------------------IWSTLKSRYGGDDAGRKKYVIGKWLQFELMDDKPVMDQVHE 103
                              IWSTL+SRY GDDAGRKKYV+GKWLQF + DDKPV++Q+HE
Sbjct: 61  SNPESSTGPSTTVAVTDQDIWSTLESRY-GDDAGRKKYVVGKWLQFRMTDDKPVVEQIHE 120

[Close]

BLAST of Tan0003800 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 5.6e-33
Identity = 87/181 (48.07%), Postives = 96/181 (53.04%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIF +QLEV YV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0003800 vs. NCBI nr
Match: KAA0043346.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 5.6e-33
Identity = 87/181 (48.07%), Postives = 96/181 (53.04%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIF +QLEV YV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPDPPTTTSTS 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0003800 vs. ExPASy TrEMBL
Match: A0A5A7UYD5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00940 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 82/136 (60.29%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYVI---------------- 60
           MSIK S K+L DLSKLEPLDG NYR WSQKLLIF +QLEV YV+                
Sbjct: 1   MSIKTSNKILSDLSKLEPLDGMNYRRWSQKLLIFFEQLEVDYVLTTDPPSSDLPTTTSTS 60

Query: 61  -----------------WSTLKSRYGGDDAGRKKYVIGKWLQFELMDDKPVMDQVHEYQN 103
                             STL+SRYGGDDAGRKKYV+GKWLQF++ D KPV++Q+HEY+N
Sbjct: 61  FDPESSTGPPTTVAVTDQSTLESRYGGDDAGRKKYVVGKWLQFQMTDGKPVVEQIHEYEN 120

[Close]

BLAST of Tan0003800 vs. ExPASy TrEMBL
Match: A0A5D3C7N0 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001400 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 82/136 (60.29%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYVI---------------- 60
           MSIK S K+L DLSKLEPLDG NYR WSQKLLIF +QLEV YV+                
Sbjct: 1   MSIKTSNKILSDLSKLEPLDGMNYRRWSQKLLIFFEQLEVDYVLTTDPPSSDLPTTTSTS 60

Query: 61  -----------------WSTLKSRYGGDDAGRKKYVIGKWLQFELMDDKPVMDQVHEYQN 103
                             STL+SRYGGDDAGRKKYV+GKWLQF++ D KPV++Q+HEY+N
Sbjct: 61  FDPESSTGPPTTVAVTDQSTLESRYGGDDAGRKKYVVGKWLQFQMTDGKPVVEQIHEYEN 120

[Close]

BLAST of Tan0003800 vs. ExPASy TrEMBL
Match: A0A5D3E411 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00650 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.2e-34
Identity = 82/139 (58.99%), Postives = 93/139 (66.91%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NYR WS+KLLIF +QLE  YV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEFDYVLTTDLSSSDPSATTSTS 60

Query: 61  -------------------IWSTLKSRYGGDDAGRKKYVIGKWLQFELMDDKPVMDQVHE 103
                              IWSTL+SRY GDDAGRKKYV+GKWLQF + DDKPV++Q+HE
Sbjct: 61  SNPESSTGPSTTVAVTDQDIWSTLESRY-GDDAGRKKYVVGKWLQFRMTDDKPVVEQIHE 120

[Close]

BLAST of Tan0003800 vs. ExPASy TrEMBL
Match: A0A5A7TMS2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002600 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.7e-33
Identity = 87/181 (48.07%), Postives = 96/181 (53.04%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIF +QLEV YV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPDPPTTTSTS 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0003800 vs. ExPASy TrEMBL
Match: A0A5D3BWR7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00230 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.7e-33
Identity = 87/181 (48.07%), Postives = 96/181 (53.04%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRCWSQKLLIFLKQLEVCYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIF +QLEV YV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPDPPTTTSTS 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0003800 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 44.3 bits (103), Expect = 6.9e-05
Identity = 20/78 (25.64%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 23  YRCWSQKLLIFLKQLEVCYVIWSTLKSRYGGDDAGRKKYVIGKWLQFELMDDKPVMDQVH 82
           YR +SQK        +    +W  LK  Y  D++  K+  + K+++F +++++P+++QV 
Sbjct: 273 YRRYSQK-------FKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQ 332

Query: 83  EYQNLVANVLSEGMKMCE 101
            +  +  +++S GM + E
Sbjct: 333 VFNKIADSIVSAGMFLDE 343

The following BLAST results are available for this feature:

BLAST of Tan0003800 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058501.1	3.9e-34	60.29	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07244.1	3.9e-34	60.29	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK30642.1	1.5e-33	58.99	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	5.6e-33	48.07	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043346.1	5.6e-33	48.07	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0003800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYD5	1.9e-34	60.29	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C7N0	1.9e-34	60.29	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E411	7.2e-34	58.99	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TMS2	2.7e-33	48.07	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BWR7	2.7e-33	48.07	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0003800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	6.9e-05	25.64	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 38..101
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 38..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003800.1	Tan0003800.1	mRNA