Tan0003760 (gene) Snake gourd v1

Overview


Name	Tan0003760
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Eukaryotic translation initiation factor 5A
Location	LG04: 9236948 .. 9239599 (+)
RNA-Seq Expression	Tan0003760
Synteny	Tan0003760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTGCCCTTTTTTGGTATCCACCGTTTTTTTCCAGTATATAAATTCACTTCTTTTCTTCAAACTCCTTGTCGCACGTCTCTGAGCATAGTTAGTTTTCCTTCATCAACTCTCTTCTTTGCAGTTTTTTCCCTACAGAGCCATGTCGGACGAAGAGCACCACTTCGAGTCGAAGGCCGATGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATTGTCATCAAGGGCAGGCCCTGCAAGGTTTGTTTCGTTTTCATTCCGATTCCTCAATTCTCCCTCATCCTTTGGCCCATCTATTCGCATAATTCTTGTTTAACATTCAATATCTCTGCGTTATATCACCTGCTTCAATTTTTCATTTTCTTGTTGCTTTATGCATATTGCTTTTTCAAGGGTTTTCCATTTATCCCATCTTGTTCTGTGGTTTTTGGAATGATTCTTTTCCTCTGTTTTAGGTTTTATTTACTTCTAGATGTCGTTGATGGTTGAATTTAGTTTTCTAGATCGAATTTCTTTTGGGTAAAATTGAATTGATGGCCAATCTAATCAGCTGGAATGAAACTAATTAATAGTATGAACCTGCCATATTTCAGTCTATCTTCTAGGGTTTTCACCTTTCGCGGTTTCTGCACGATATTTGTTACGTTGTATATATGTTTTTCAATTGACAATCTTGACTTAAGGCTTATGCATAACCGTTTGTAGGTTGTTGAGGTTTCAACCTCAAAGACTGGAAAGCATGGACATGCTAAATGTCACTTTGTTGGCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTATGAAGATTTTTTTTTTTTCCATTTTATACTTTTCTTAGTATGTTGTAGGTTTGTTTGTGCTAGTTTGTAATTTCTAATTATTGTGTTCTTGAAACACAGGTTCCTCATGTCAATCGCACTGATTACCAGCTGATTGATATCTCTGAGGATGGATTTGTATGGTCAAATTCTCTTTGTTTATTTCGTTGTATCAGTTTCCTCTGCTTGTCCATGTAGAGCACCGTAGCTAACCCTAATTTCAATGATAACTTACCAGATTAGCCTGCTGACGGAAAGTGGTAACACCAAGGATGACCTGAGGCTTCCAACCGATGACAATCTGCAGAGCCAGGTAATATTTTCTTATTGGGCTGTTGACATTTTTCTGTGCTGTTGTGTTCAATTTGCCTTGCTGCCTTTGTAGAACACATTGCTTGTTCAACAAAACTATTTCTTCCTCCACTCCCTAAAGTATATTAACCGGTCCTCATTTTTATGGGACTTTAATACTCAATCTGGGATTAGGAGTTTTAAGCGTGGATGGAATTCTGCTTTTTTCTACTTTTCCCCTCCCTTAATTACGCATATGTTTTTCATTTATATATATGGGTTTGAATTTCTGGCAAAATGTGGACACGTGCTTTAGTCTACTGGTGGGTGGGAACCACATGAAGGAGGGTTTGAATAACAGTATTTTAATCTAGGGATGCTGAAACGTCGTTTTTAAAATGCAAAGGTATAGTTTGTACATGACTAACTACCCAAGCATTTAATAGTAGTAGACAGAAAAAGATCCCATGATTTTGAACGGGTGTTACTTGAGAATCGGGTGAAAACAGGTTGGGTTGGGTCAGGGCTTCCGCGAAAACGAATATGGATCTGTGAGTGAAGAGTAAGAAGAAGAAGGACCTCGGATGGTGGGGGACGTCAACAGCTAGGCTTGTGGGTATTATCATCTTTCATAAAAGTTCGGGGAGGAAGAATAAAGAAGAAGAGAAGCATTTTTCCATAAAGAGCTAATCTAACTATATTAATTTTCACAATTTTTTTTCTTGTGCACAATACGAATTCATAGGCCTAATTAAATAGTTAGTTGACAAATAATGATACGTTGATCTACAAGTTTCTCTGTTTCTTGCAAGATGGGTTCTTATTGTGAGATCAATAGCTTTAGTTGATAGTACTTCATTGGCAATCTATAAATCTGTTCCATAAGCTATGAGCAGTGGTATGAGATTGATTGTTTGTCTTGTAACTATGTGCTACATGCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTAACTGTCATGTCTTCAATGGGCGAAGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAGATTCTCCTTTGATAAAAACACAACTGCAGCAAAATTTTAAAACAATATCCAGATCATAGTCCATAGTCGTTTGACATGTTTGAGAAAGCTTGCTCCTCCACTGGAATATTCTCAATTAGTGGTTTCTTTACTCTCTAGACTCTACAATTAATATTTATTTTTCTCCTCCTTATATTGCTGTTTGAATTAAGAGTTGTTTCTTGGCTAGTCTTCTCTTCAGTTATCAAATTATGTAAACTTTCATAGCTGCTATGGTTGGTTTAAGGGTTGTAGGATAGATTCGTGGTTTTTGAGGAAGTATAATATTTATTTACTACTAGGAGTTTCTTCTTTGTTTTTATTGCTTTTCGTATTGCAAACTTTCTTTATTGGCCTTCTGAAGCTTCATTTTATGTGTTCTTTGGGCATTCAATTATATATATATATATATATATAGCCAATGT

mRNA sequence

TTCCTGCCCTTTTTTGGTATCCACCGTTTTTTTCCAGTATATAAATTCACTTCTTTTCTTCAAACTCCTTGTCGCACGTCTCTGAGCATAGTTAGTTTTCCTTCATCAACTCTCTTCTTTGCAGTTTTTTCCCTACAGAGCCATGTCGGACGAAGAGCACCACTTCGAGTCGAAGGCCGATGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATTGTCATCAAGGGCAGGCCCTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACTGGAAAGCATGGACATGCTAAATGTCACTTTGTTGGCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCTCATGTCAATCGCACTGATTACCAGCTGATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGAAAGTGGTAACACCAAGGATGACCTGAGGCTTCCAACCGATGACAATCTGCAGAGCCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTAACTGTCATGTCTTCAATGGGCGAAGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAGATTCTCCTTTGATAAAAACACAACTGCAGCAAAATTTTAAAACAATATCCAGATCATAGTCCATAGTCGTTTGACATGTTTGAGAAAGCTTGCTCCTCCACTGGAATATTCTCAATTAGTGGTTTCTTTACTCTCTAGACTCTACAATTAATATTTATTTTTCTCCTCCTTATATTGCTGTTTGAATTAAGAGTTGTTTCTTGGCTAGTCTTCTCTTCAGTTATCAAATTATGTAAACTTTCATAGCTGCTATGGTTGGTTTAAGGGTTGTAGGATAGATTCGTGGTTTTTGAGGAAGTATAATATTTATTTACTACTAGGAGTTTCTTCTTTGTTTTTATTGCTTTTCGTATTGCAAACTTTCTTTATTGGCCTTCTGAAGCTTCATTTTATGTGTTCTTTGGGCATTCAATTATATATATATATATATATATAGCCAATGT

Coding sequence (CDS)

ATGTCGGACGAAGAGCACCACTTCGAGTCGAAGGCCGATGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATTGTCATCAAGGGCAGGCCCTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACTGGAAAGCATGGACATGCTAAATGTCACTTTGTTGGCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCTCATGTCAATCGCACTGATTACCAGCTGATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGAAAGTGGTAACACCAAGGATGACCTGAGGCTTCCAACCGATGACAATCTGCAGAGCCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTAACTGTCATGTCTTCAATGGGCGAAGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAG

Protein sequence

MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTDDNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK

Homology

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BLAST of Tan0003760 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-83
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL +QIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 307.0 bits (785), Expect = 1.3e-82
Identity = 145/159 (91.19%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +NL SQIKDGFAEGKDL+V+VMS+MGEE+IC+LKDIGPK
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

[Close]

BLAST of Tan0003760 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 143/159 (89.94%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL + IKDGFAEGKDL+++VMS+MGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]

BLAST of Tan0003760 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 143/159 (89.94%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL + IKDGFAEGKDL+++VMS+MGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]

BLAST of Tan0003760 vs. ExPASy Swiss-Prot
Match: P56336 (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-81
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLT++GNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           D+L SQIKDGFAEGKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 DSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. NCBI nr
Match: XP_022726772.1 (uncharacterized protein LOC111282794 [Durio zibethinus])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 153/159 (96.23%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 469 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 528

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 529 VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 588

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL +QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 589 DNLLTQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 627

[Close]

BLAST of Tan0003760 vs. NCBI nr
Match: XP_008446407.1 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo] >KAA0034452.1 eukaryotic translation initiation factor 5A-2 [Cucumis melo var. makuwa] >TYK17682.1 eukaryotic translation initiation factor 5A-2 [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 155/159 (97.48%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGFISLLT+SG+TKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGSTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL SQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 DNLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. NCBI nr
Match: XP_008360103.1 (eukaryotic translation initiation factor 5A-2 [Malus domestica] >XP_009356353.1 PREDICTED: eukaryotic translation initiation factor 5A-2 [Pyrus x bretschneideri] >RXH79509.1 hypothetical protein DVH24_040656 [Malus domestica])

HSP 1 Score: 318.5 bits (815), Expect = 3.2e-83
Identity = 152/159 (95.60%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL +QIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. NCBI nr
Match: XP_022775772.1 (eukaryotic translation initiation factor 5A-2 [Durio zibethinus])

HSP 1 Score: 318.5 bits (815), Expect = 3.2e-83
Identity = 152/159 (95.60%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRT+YQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL +QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. NCBI nr
Match: XP_007045977.2 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Theobroma cacao] >EOY01807.1 Eukaryotic elongation factor 5A-1 isoform 1 [Theobroma cacao])

HSP 1 Score: 317.8 bits (813), Expect = 5.4e-83
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL +QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. ExPASy TrEMBL
Match: A0A6P5XGC9 (uncharacterized protein LOC111282794 OS=Durio zibethinus OX=66656 GN=LOC111282794 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.3e-84
Identity = 153/159 (96.23%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 469 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 528

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 529 VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 588

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL +QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 589 DNLLTQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 627

[Close]

BLAST of Tan0003760 vs. ExPASy TrEMBL
Match: A0A5D3D1G5 (Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00070 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.0e-84
Identity = 155/159 (97.48%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGFISLLT+SG+TKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGSTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL SQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 DNLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. ExPASy TrEMBL
Match: A0A1S3BFT8 (Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103489162 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.0e-84
Identity = 155/159 (97.48%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGFISLLT+SG+TKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGSTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL SQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 DNLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. ExPASy TrEMBL
Match: A0A498I9B2 (Eukaryotic translation initiation factor 5A OS=Malus domestica OX=3750 GN=DVH24_040656 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.5e-83
Identity = 152/159 (95.60%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL +QIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. ExPASy TrEMBL
Match: A0A6P6BF84 (Eukaryotic translation initiation factor 5A OS=Durio zibethinus OX=66656 GN=LOC111317600 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.5e-83
Identity = 152/159 (95.60%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRT+YQLIDISEDGF+SLLTE+GNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           DNL +QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Tan0003760 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 285.0 bits (728), Expect = 3.6e-77
Identity = 137/159 (86.16%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           V IDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG++SLLT++G+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           D L  QIK GF +GKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]

BLAST of Tan0003760 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 281.2 bits (718), Expect = 5.2e-76
Identity = 131/159 (82.39%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKTYPQQAG IRK G+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           V IDIFT+KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGF+SLLT++G+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           + L +Q+K+GF EGKD++V+VMS+MGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]

BLAST of Tan0003760 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 268.9 bits (686), Expect = 2.7e-72
Identity = 126/157 (80.25%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           V IDIFTAKKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGF+SLLT+SG TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLQSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIG 158
           D L +Q++ GF EGKD++V+VMSSMGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]

BLAST of Tan0003760 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 223.8 bits (569), Expect = 9.9e-59
Identity = 105/127 (82.68%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTESGNTKDDLRLPTD 120
           V IDIFTAKKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGF+SLLT+SG TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLQSQI 128
           D L +Q+
Sbjct: 121 DGLTAQL 126

The following BLAST results are available for this feature:

BLAST of Tan0003760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24922	1.9e-83	93.08	Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40...	[more]
Q9AXJ4	1.3e-82	91.19	Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV...	[more]
P69039	1.1e-81	89.94	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40...	[more]
P69040	1.1e-81	89.94	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI...	[more]
P56336	1.8e-81	91.82	Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EI...	[more]

BLAST of Tan0003760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022726772.1	1.1e-83	96.23	uncharacterized protein LOC111282794 [Durio zibethinus]	[more]
XP_008446407.1	1.9e-83	97.48	PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo] >KAA0034...	[more]
XP_008360103.1	3.2e-83	95.60	eukaryotic translation initiation factor 5A-2 [Malus domestica] >XP_009356353.1 ...	[more]
XP_022775772.1	3.2e-83	95.60	eukaryotic translation initiation factor 5A-2 [Durio zibethinus]	[more]
XP_007045977.2	5.4e-83	95.60	PREDICTED: eukaryotic translation initiation factor 5A-2 [Theobroma cacao] >EOY0...	[more]

BLAST of Tan0003760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5XGC9	5.3e-84	96.23	uncharacterized protein LOC111282794 OS=Durio zibethinus OX=66656 GN=LOC11128279...	[more]
A0A5D3D1G5	9.0e-84	97.48	Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BFT8	9.0e-84	97.48	Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103489...	[more]
A0A498I9B2	1.5e-83	95.60	Eukaryotic translation initiation factor 5A OS=Malus domestica OX=3750 GN=DVH24_...	[more]
A0A6P6BF84	1.5e-83	95.60	Eukaryotic translation initiation factor 5A OS=Durio zibethinus OX=66656 GN=LOC1...	[more]

BLAST of Tan0003760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	3.6e-77	86.16	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	5.2e-76	82.39	eukaryotic elongation factor 5A-3	[more]
AT1G26630.1	2.7e-72	80.25	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	9.9e-59	82.68	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 85..154 e-value: 6.8E-33 score: 125.3
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 85..154 e-value: 4.3E-29 score: 100.4
IPR001884	Translation elongation factor IF5A-like	PIRSF	PIRSF003025	Transl_init_eIF5A	coord: 1..157 e-value: 2.6E-67 score: 223.2
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 17..153 e-value: 9.7E-42 score: 139.8
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 1..156
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..85 e-value: 1.5E-43 score: 148.5
None	No IPR available	GENE3D	2.40.50.140		coord: 86..158 e-value: 6.1E-34 score: 117.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11673:SF42	BNAA07G09420D PROTEIN	coord: 1..156
None	No IPR available	CDD	cd04468	S1_eIF5A	coord: 86..156 e-value: 2.1531E-30 score: 103.001
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 50..57
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 86..156
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 15..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003760.1	Tan0003760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
biological_process	GO:0006413	translational initiation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding