Tan0003735 (gene) Snake gourd v1

Overview


Name	Tan0003735
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	conserved peptide upstream open reading frame 33
Location	LG11: 5411103 .. 5413468 (-)
RNA-Seq Expression	Tan0003735
Synteny	Tan0003735

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAACGACGGTCTCCCTACCTCCCTTAATATTTGCAAAAAAGGGGTTGTGACTAACTTTTGTTGTTTGCTTTGCAGGAAAAAGGTGGAGTCTGTCACTCACACTTTCTGGATGTGCAAATGGGTCTCGAAAGTGTGACTTTTTTATTTTTCTGTTATGGCTAAACTTTTCTCTGTTTGCAGGGATTTTTGGTCTCCTCTTGACTTTTGGGGTTGGATGATAAAGACTCTTAGTAACGAAAACCTTTCCAAGGCTATCACTATTTTGTGGAGTCTTTGGAAATTTCGAAATCTCTTCAATCTCACTATGCGTTCTTCCTGTGCAGGTCCACCTATGGGTTCGAATATATTCACAGGTTTATCGACAAAAGTCTCAATGATGTCGAAGCTGAAGCCTCTCGTGGCATCTCTAATGGCAGATCAGAGAGCCCCCCGAGTCCGAATGAATGGTCCCCTCCTCCAATTGGTTCGCTCAAACTAAACGCCGACACATCTTGATGCGAAGCTACAGGAATAGGTGGGCTTGGATGGATTGTTCGTGACTCTGGAGGATCTCCCATTTGCGTTGGCTTTCAACATTGGAAGAGACGCTGGCCTATTAAATCTTTGGAGGTCAGCTATTTGTGCAGGTTTGAAAGCCCTCAGAAGCATGAACATATACGCTTCCTCTCCCTTATTAGTGGAATCAGATTCGTGGGATGTTGTTTATGCTCTCAACTCCCTCGATCAGGACCTTTCTGAAACGAACTCTATTTTGCAGGATATTCGTTCTTTGGCCTCTTGTTGGCCTTCTGTTTGTTTCTCCTATTGTGCTAGATCATGTAACGGTGTTGCCCATGAGTTAGCTAAGGTTGTTTTTTGGGTGCCCCTGTTTGGTCGCTATCTTCCAATTTGGAGAATAGCCCTATCTTTTGGACTTCTGACTTAAAGCGATTCTCCTGGCCAAAATTATACTTTTTTTTAATTTTATTTTATTTGTATGGGAGCCCATTTTAAAATCATGCGGCACAACTTCAACAGATAAAAGACAATTCTGATCAGACGGTTTGGATCTAATCTGATCAGTACTGGACCCCACCACAAACCATCCTGACAAAGTCGTCTGTATTTATCTATAAAAGAAATATATATTTATACCTATCCAAAATAAATAAATAATAAACTTTTATCAAAATAATAATTATAAGAAATATATATATTTGGCCTTTGATTTTAGTTCAATTTATGTCTATACTCCCAGTTTTGATTCATTTTAGTCTTCGTATTTTTAAAATATTCATTTTAGTTTTATTTCTTTAAAAAATCATCAATTTAAAATATTCATTTTAGTTTTTATTTCTTTAAAAAATCATCAATTTAATCTCTATTTGTAAAATTGAAAGATCAATTTTATATCTAATAGAAACTTTTTAATACAAATTTATGATTATATTTCAAAAAATTTAGCTTATGAAATTTTATATAAAAATTATGATAAAAATAAAAGTAATAAATTAGTCACGTTAGAACTAAAATAAATAACTAAAATTTAAAGTTGAGAAATTATGACTCCGTTTCATCATTTGATTTTTTATTTTTTATTTTTTAAAATTAAGTTTAAAATATTATTCCTATCAATGAATTTTTATGTTTTCTTATTTACATTATACCTATATTTTTTTTAAAATCAAACTAAGTTTTAAAAACTAAAAAAAATAGTTTTCAATATTTTCGTTTTAAAAGTTTAAATGATACAAGAGATTAAACCTATTATAAAAAAATAGAGAGAAATGGTGAAAAAACTTTGTAATTTAACCAAACTTAAAATATACCTTTTAAAAGACGAAAACACAAAAGCGAAAAACTACAAGTCTACAACAACCAAAATAGAGTATTTAAACCTTATAAAAAAAATTAAAAGGAAATGAAATGTATTTATACATATTCGCAGTTACGGAAGAACTCCAAGATCACAAGTGGATGGTTCGAATCAGTAAGGGTATTATAGTCTTTTCAATTCCTCGAGGACTATAAAACGCGCTCGAACCCCCACTATCAATTTTACCCGCTGATAACAACCAGAGGTTGCACAGTGCGTCGTTGAATCAATTCCGTCCCGGTCGCCGGAGTTCCTGATTTCCGATCAAACATTCGTATTCTCTCTTTTTTTATCTCTCTTTTTCTCCCTAGTGTTGATTTCGTTCTCCGATTTTTCTCTGATGCGAGGTATGTTTTTGTGTTTTCTCAGAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTATTTCTCCATTGGGAACACCGGCTAGGTTACTGTGGAGCACCAGCTTCTTCCGCCACAAGCTCATGATTTTCTAA

mRNA sequence

ATGCTTAACGACGGTCTCCCTACCTCCCTTAATATTTGCAAAAAAGGGGTTGTGACTAACTTTTGTTGTTTGCTTTGCAGGAAAAAGGTGGAGTCTGTCACTCACACTTTCTGGATGGATTTTTGGTCTCCTCTTGACTTTTGGGGTTGGATGATAAAGACTCTTAGTAACGAAAACCTTTCCAAGGCTATCACTATTTTGTGGAGTCTTTGGAAATTTCGAAATCTCTTCAATCTCACTATGCGTTCTTCCTGTGCAGGTCCACCTATGGGTTCGAATATATTCACAGAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTATTTCTCCATTGGGAACACCGGCTAGGTTACTGTGGAGCACCAGCTTCTTCCGCCACAAGCTCATGATTTTCTAA

Coding sequence (CDS)

ATGCTTAACGACGGTCTCCCTACCTCCCTTAATATTTGCAAAAAAGGGGTTGTGACTAACTTTTGTTGTTTGCTTTGCAGGAAAAAGGTGGAGTCTGTCACTCACACTTTCTGGATGGATTTTTGGTCTCCTCTTGACTTTTGGGGTTGGATGATAAAGACTCTTAGTAACGAAAACCTTTCCAAGGCTATCACTATTTTGTGGAGTCTTTGGAAATTTCGAAATCTCTTCAATCTCACTATGCGTTCTTCCTGTGCAGGTCCACCTATGGGTTCGAATATATTCACAGAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTATTTCTCCATTGGGAACACCGGCTAGGTTACTGTGGAGCACCAGCTTCTTCCGCCACAAGCTCATGATTTTCTAA

Protein sequence

MLNDGLPTSLNICKKGVVTNFCCLLCRKKVESVTHTFWMDFWSPLDFWGWMIKTLSNENLSKAITILWSLWKFRNLFNLTMRSSCAGPPMGSNIFTEVFETDEELGNNRAGGVMGFCISPLGTPARLLWSTSFFRHKLMIF

Homology

[Close]

BLAST of Tan0003735 vs. NCBI nr
Match: KAG7033126.1 (hypothetical protein SDJN02_07179, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-18
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 70  LWKFRNLFNLTMRSSCAGPPMGSNIFTEVFETDEELGNNRAGGVMGFCISPLGTPARLLW 129
           LW F  + N  +RS             EVFETDEELGNNRAGGVMGFC+SPLGTPARLLW
Sbjct: 18  LWSFHIIGNYKLRSDPDYQVYPLITTREVFETDEELGNNRAGGVMGFCVSPLGTPARLLW 77

Query: 130 STSFFRHKLMIF 142
           STSFFRHKLMIF
Sbjct: 78  STSFFRHKLMIF 89

[Close]

BLAST of Tan0003735 vs. NCBI nr
Match: KAG7016183.1 (hypothetical protein SDJN02_21287, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 7.3e-15
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 98  VFETDEELGNNRAGGVMGFCISPLGTPARLLWSTSFFRHKLMIF 142
           VFETDE LGNNRAG VMGFCISPLGTPARLLWSTSFFRHKLMIF
Sbjct: 32  VFETDEALGNNRAGRVMGFCISPLGTPARLLWSTSFFRHKLMIF 75

[Close]

BLAST of Tan0003735 vs. NCBI nr
Match: XP_030447493.1 (deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Syzygium oleosum])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 103 EELGNNRAG-GVMGFCISPLGTPARLLWSTSFFRHKLMIF 142
           EELG    G GVMGFCI PL TPARLLWSTSFFRHKLM+F
Sbjct: 345 EELGKAVVGSGVMGFCICPLDTPARLLWSTSFFRHKLMLF 384

[Close]

BLAST of Tan0003735 vs. NCBI nr
Match: PIN00164.1 (hypothetical protein CDL12_27332 [Handroanthus impetiginosus])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 113 VMGFCISPLGTPARLLWSTSFFRHKLMIF 142
           +MGFCI PL TPARLLWSTSFFRHKLM+F
Sbjct: 1   MMGFCICPLETPARLLWSTSFFRHKLMLF 29

[Close]

BLAST of Tan0003735 vs. NCBI nr
Match: PHU27564.1 (hypothetical protein BC332_05896 [Capsicum chinense])

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-05
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 114 MGFCISPLGTPARLLWSTSFFRHKLMIF 142
           MGFCI PL TPARLLWSTSFFRHKLM+F
Sbjct: 1   MGFCICPLETPARLLWSTSFFRHKLMLF 28

[Close]

BLAST of Tan0003735 vs. ExPASy TrEMBL
Match: A0A2G9G4C3 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27332 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 113 VMGFCISPLGTPARLLWSTSFFRHKLMIF 142
           +MGFCI PL TPARLLWSTSFFRHKLM+F
Sbjct: 1   MMGFCICPLETPARLLWSTSFFRHKLMLF 29

[Close]

BLAST of Tan0003735 vs. ExPASy TrEMBL
Match: A0A2G3D9B2 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_05896 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-05
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 114 MGFCISPLGTPARLLWSTSFFRHKLMIF 142
           MGFCI PL TPARLLWSTSFFRHKLM+F
Sbjct: 1   MGFCICPLETPARLLWSTSFFRHKLMLF 28

[Close]

BLAST of Tan0003735 vs. ExPASy TrEMBL
Match: A2NW02 (A.thaliana homeobox gene Athb-1 mRNA OS=Arabidopsis thaliana OX=3702 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-05
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 113 VMGFCISPLGTPARLLWSTSFFRHKLMIF 142
           +MGFCI PL +PARLLWSTSFFRHK+MIF
Sbjct: 1   MMGFCICPLESPARLLWSTSFFRHKIMIF 29

[Close]

BLAST of Tan0003735 vs. ExPASy TrEMBL
Match: A0A2G9GBV9 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_24776 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-04
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 113 VMGFCISPLGTPARLLWSTSFFRHKLMIF 142
           +MGFCI PL TPARLLW +SFFRHKLM+F
Sbjct: 1   MMGFCICPLETPARLLWCSSFFRHKLMLF 29

[Close]

BLAST of Tan0003735 vs. ExPASy TrEMBL
Match: A0A2I4FCK2 (uncharacterized protein LOC108997512 OS=Juglans regia OX=51240 GN=LOC108997512 PE=4 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-04
Identity = 33/96 (34.38%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 2   LNDGLPTSLNICKKGVVTNFCCLLCRKKVESVTHTFW-----MDFW----SPLDFWG--- 61
           LN+ LPTS+N+ K+ V+ +  C +CR++ E V H  W      D W    SP+  W    
Sbjct: 15  LNNALPTSINLFKRKVIEDPLCPICRREEEDVKHVLWCCPAAADVWAEAESPVRKWRNQV 74

Query: 62  ------WM--IKTLSNENLSKAITILWSLWKFRNLF 78
                 WM  IK LS + L + + I+  +W  RN F
Sbjct: 75  QDFTSLWMELIKKLSKDCLERVVAIMRGIWGRRNAF 110

[Close]

BLAST of Tan0003735 vs. TAIR 10
Match: AT3G01472.1 (conserved peptide upstream open reading frame 33 )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 114 MGFCISPLGTPARLLWSTSFFRHKLMIF 142
           MGFCI PL +PARLLWSTSFFRHK+MIF
Sbjct: 1   MGFCICPLESPARLLWSTSFFRHKIMIF 28

The following BLAST results are available for this feature:

BLAST of Tan0003735 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003735 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033126.1	3.2e-18	69.44	hypothetical protein SDJN02_07179, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7016183.1	7.3e-15	95.45	hypothetical protein SDJN02_21287, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_030447493.1	2.5e-07	80.00	deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Syzygium oleosu...	[more]
PIN00164.1	5.2e-05	86.21	hypothetical protein CDL12_27332 [Handroanthus impetiginosus]	[more]
PHU27564.1	6.8e-05	89.29	hypothetical protein BC332_05896 [Capsicum chinense]	[more]

BLAST of Tan0003735 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9G4C3	2.5e-05	86.21	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27332 P...	[more]
A0A2G3D9B2	3.3e-05	89.29	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_05896 PE=4 SV=1	[more]
A2NW02	7.4e-05	82.76	A.thaliana homeobox gene Athb-1 mRNA OS=Arabidopsis thaliana OX=3702 PE=2 SV=1	[more]
A0A2G9GBV9	2.8e-04	79.31	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_24776 P...	[more]
A0A2I4FCK2	2.8e-04	34.38	uncharacterized protein LOC108997512 OS=Juglans regia OX=51240 GN=LOC108997512 P...	[more]

BLAST of Tan0003735 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01472.1	1.9e-08	85.71	conserved peptide upstream open reading frame 33	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003735.1	Tan0003735.1	mRNA