Tan0003555 (gene) Snake gourd v1

Overview


Name	Tan0003555
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CCHC-type domain-containing protein
Location	LG01: 28776379 .. 28777250 (+)
RNA-Seq Expression	Tan0003555
Synteny	Tan0003555

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGGAAGCTTTCAGCAAGCAGATAGAAAACTTAAAGCTTACAGAAAATGAAAAGGCCAAAGTTATAGATATAGGAGATGAAGATCTGGAAGCTGCTGACAAAAACCTTCAAAACGCTACTATATGCAAAGTCCTGTCTTCAAACCTGATCATAGGAGATATCTTCAAAACTATCATGCCAAGGATTTGGAACCTAGAAGGGAAGGTGTCGATGCAAAACAGAGGCACAAATACTTTCTTCTGCCATTTCAGCAACACAAAGGACAAGAAGAAGATAACAGAAGGAGGACTGTGGACCTTTGACAAAGCGTTCATGTTGTTCGATGAGCCACGAGGGAGCTATCGAGGATTCGAATGGGAATTCAAATACGCAAACTTTTGGGTTCACCTACATAACTTACCTCTGATTTGTTTTTGCAGGAAATGGGCCAAAGTCCTTGGAACTCGATTGGAGAATTTATCGAAGTCGAATCTGACGATCAAGGGATCTGCGAAGGGTTGTCTCTGAGAATCAGGATAAAGATCGACGTGACCAAGCCTCTGACTCGAGGCACAATGATTAAAATATGATCCATGGCAGAAGAAGTTTAGATCTCAACCACCTATGAGAAACTTCTGAACTTCTGTTATAGTTGTGGTAAAATAGGACATGTTTTCAGAGACTGTGATCATTATCACCAAGATTCGGAGGAGGATTTCATGTTCAGCAAAAGGCTAAGGGAATCTGCCTATATTAGAGGTAAAAGCAAGGGAGGAAAGGAAAGGAAGAGGACACCTCAAGGCCTAACAGAGGAAGGGGATGTGGAAGAGGTTCAGGCAGATCGACAGAAGCTAGAAAAGAGACCCAAGACGATGACAACGGTGTGA

mRNA sequence

ATGGAGGTGGAAGCTTTCAGCAAGCAGATAGAAAACTTAAAGCTTACAGAAAATGAAAAGGCCAAAGTTATAGATATAGGAGATGAAGATCTGGAAGCTGCTGACAAAAACCTTCAAAACGCTACTATATGCAAAGTCCTGTCTTCAAACCTGATCATAGGAGATATCTTCAAAACTATCATGCCAAGGATTTGGAACCTAGAAGGGAAGGTGTCGATGCAAAACAGAGGCACAAATACTTTCTTCTGCCATTTCAGCAACACAAAGGACAAGAAGAAGATAACAGAAGGAGGACTGTGGACCTTTGACAAAGCGTTCATGTTGTTCGATGAGCCACGAGGGAGCTATCGAGGATTCGAATGGGAATTCAAATACGCAAACTTTTGGGTTCACCTACATAACTTACCTCTGATTTGTTTTTGCAGGAAATGGGCCAAAGTCCTTGGAACTCGATTGGAGAATTTATCGAAGTCGAATCTGACGATCAAGGGATCTGCGAAGGGACATGTTTTCAGAGACTGTGATCATTATCACCAAGATTCGGAGGAGGATTTCATGTTCAGCAAAAGGCTAAGGGAATCTGCCTATATTAGAGGTAAAAGCAAGGGAGGAAAGGAAAGGAAGAGGACACCTCAAGGCCTAACAGAGGAAGGGGATGTGGAAGAGGTTCAGGCAGATCGACAGAAGCTAGAAAAGAGACCCAAGACGATGACAACGGTGTGA

Coding sequence (CDS)

ATGGAGGTGGAAGCTTTCAGCAAGCAGATAGAAAACTTAAAGCTTACAGAAAATGAAAAGGCCAAAGTTATAGATATAGGAGATGAAGATCTGGAAGCTGCTGACAAAAACCTTCAAAACGCTACTATATGCAAAGTCCTGTCTTCAAACCTGATCATAGGAGATATCTTCAAAACTATCATGCCAAGGATTTGGAACCTAGAAGGGAAGGTGTCGATGCAAAACAGAGGCACAAATACTTTCTTCTGCCATTTCAGCAACACAAAGGACAAGAAGAAGATAACAGAAGGAGGACTGTGGACCTTTGACAAAGCGTTCATGTTGTTCGATGAGCCACGAGGGAGCTATCGAGGATTCGAATGGGAATTCAAATACGCAAACTTTTGGGTTCACCTACATAACTTACCTCTGATTTGTTTTTGCAGGAAATGGGCCAAAGTCCTTGGAACTCGATTGGAGAATTTATCGAAGTCGAATCTGACGATCAAGGGATCTGCGAAGGGACATGTTTTCAGAGACTGTGATCATTATCACCAAGATTCGGAGGAGGATTTCATGTTCAGCAAAAGGCTAAGGGAATCTGCCTATATTAGAGGTAAAAGCAAGGGAGGAAAGGAAAGGAAGAGGACACCTCAAGGCCTAACAGAGGAAGGGGATGTGGAAGAGGTTCAGGCAGATCGACAGAAGCTAGAAAAGAGACCCAAGACGATGACAACGGTGTGA

Protein sequence

MEVEAFSKQIENLKLTENEKAKVIDIGDEDLEAADKNLQNATICKVLSSNLIIGDIFKTIMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGFEWEFKYANFWVHLHNLPLICFCRKWAKVLGTRLENLSKSNLTIKGSAKGHVFRDCDHYHQDSEEDFMFSKRLRESAYIRGKSKGGKERKRTPQGLTEEGDVEEVQADRQKLEKRPKTMTTV

Homology

[Close]

BLAST of Tan0003555 vs. NCBI nr
Match: TXG64850.1 (hypothetical protein EZV62_011844 [Acer yangbiense])

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-18
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 1   MEVEAFSKQIENLKLTENE-KAKVIDIGDEDLEAADKNLQNATICKVLSSNLIIGDIFKT 60
           M  E  +K  + L +TE E  A  +++   D     K L    + KVL+S L+  ++F  
Sbjct: 1   MNAEEIAKLCDALSITEKEMPAHTLNVTLTD--RGKKRLAMCIVGKVLTSRLVKKEVFID 60

Query: 61  IMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGF 120
           +M +IW + G V ++    N F  +F+N +D+ ++  GG W+FD+A ++FDEP G+    
Sbjct: 61  VMSKIWRVSGGVDIEPIKGNIFAFYFTNDEDRMRVLRGGPWSFDRAIIIFDEPTGTRDIS 120

Query: 121 EWEFKYANFWVHLHNLPLICFCRKWAKVLGTRLENLSKSNLTIKGSAKGHVFR 173
              F Y +FWV +HNLPL+C   +    LG+ +  +   +  I   A G   R
Sbjct: 121 NLRFNYVDFWVQIHNLPLLCMNEEIGITLGSLIGEVRDYDSGITSDASGRYIR 171

[Close]

BLAST of Tan0003555 vs. NCBI nr
Match: TXG62563.1 (hypothetical protein EZV62_009557 [Acer yangbiense])

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-18
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 13  LKLTENEKAKV---IDIGDE-------DLEAADKNLQNATIC---KVLSSNLIIGDIFKT 72
           + ++ENE A +   + IG++       D++  DK  Q   +C   KVL+S ++  + FK 
Sbjct: 40  ITMSENEIASLCNALSIGEKESPAKILDVKLKDKGEQRLALCLVGKVLTSKIVNREAFKD 99

Query: 73  IMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGF 132
           +M RIW++ G V ++    N F CHF+N + +K+I  GG W FD+A ++F+EP G+    
Sbjct: 100 VMKRIWHINGGVEIEAIKDNIFECHFTNLEARKRILSGGPWRFDRAIIIFEEPMGTGDID 159

Query: 133 EWEFKYANFWVHLHNLPLICFCRKWAKVLGTRLENLSKSNLTIKGSAKGHVFR 173
              F    FWV +HNL L+C   +    LG  +  +   +L    +  G   R
Sbjct: 160 NMFFNKTKFWVQVHNLSLLCMSEEIGLFLGNMIREVRNIDLEAGKNGSGRFIR 212

[Close]

BLAST of Tan0003555 vs. NCBI nr
Match: XP_022143536.1 (uncharacterized protein LOC111013413 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-17
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 1   MEVEAFSKQIENLKLTENEKAKVIDIGDEDLEAADKNLQNATICKVLSSNLIIGDIFKTI 60
           M  E  S+Q+E LKLT+ EK ++ D+G++++E  DK  Q + +CK+L+   I G++FK +
Sbjct: 1   MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNM 60

Query: 61  MPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGFE 120
           MPRIW +   V +++ G N F C F   +DK KI   G   FDK+ ++ +EPR +    E
Sbjct: 61  MPRIW-VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSFFDKSMVMLEEPRANCNFNE 120

Query: 121 WEF 124
            E+
Sbjct: 121 LEY 122

[Close]

BLAST of Tan0003555 vs. NCBI nr
Match: TXG60642.1 (hypothetical protein EZV62_015215 [Acer yangbiense])

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-16
Identity = 49/173 (28.32%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 1   MEVEAFSKQIENLKLTENE-KAKVIDIGDEDLEAADKNLQNATICKVLSSNLIIGDIFKT 60
           M  +   K  + L + E +  A+ +D+  + +  ++  L  + + KVL   LI  ++F +
Sbjct: 1   MNADEIIKLCDGLMIKEKKGPARTLDVSLKKM--SENRLAMSLVGKVLKKKLINNEVFIS 60

Query: 61  IMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGF 120
           +M +IW + G V ++    N F  +FSN +D+++I +GG WTFD+A ++FD+P  +    
Sbjct: 61  VMNKIWRVNGGVQIKPVEGNIFVFYFSNLEDRQRILKGGPWTFDRATIVFDKPASAGEIQ 120

Query: 121 EWEFKYANFWVHLHNLPLICFCRKWAKVLGTRLENLSKSNLTIKGSAKGHVFR 173
           + +F+  +FWV +HNL L+CF  +    LG+ +  +   +L  +        R
Sbjct: 121 QMKFQLVDFWVQIHNLLLLCFTEEIGSFLGSMIGEVHDMDLVARSDGSSRFLR 171

[Close]

BLAST of Tan0003555 vs. NCBI nr
Match: TXG51519.1 (hypothetical protein EZV62_024043 [Acer yangbiense])

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-16
Identity = 55/180 (30.56%), Postives = 82/180 (45.56%), Query Frame = 0


Query: 32  EAADKNLQNATICKVLSSNLIIGDIFKTIMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDK 91
           EA  + L N+ + KVLS  ++  D FK +M +IW     V ++    N F   F NT+DK
Sbjct: 32  EAVLQRLANSLVGKVLSPKIVHRDGFKAVMKKIWQTRDGVEIETVDGNIFTFQFGNTEDK 91

Query: 92  KKITEGGLWTFDKAFMLFDEPRGSYRGFEWEFKYANFWVHLHNLPLICFCRKWAKVLGTR 151
           K+I  GG W F+ A ++ +EPRG       +F  A FWV +HN PLIC   +  + LG  
Sbjct: 92  KRIISGGPWCFNDALIVMEEPRGMGNVQHMKFNKAEFWVQIHNAPLICMSEEIRRFLGCM 151

Query: 152 LENLSK---------------------SNLTIKGSAKGHVFRDCDHYHQDSE---EDFMF 188
           +  +                        N   +    GH  +DC    ++ E   E+F+F
Sbjct: 152 IGEVMDFDGDVLGDGVESVMLIKYERLPNFCFRCGLLGHTMKDCPEKPKNLENKKEEFLF 211

[Close]

BLAST of Tan0003555 vs. ExPASy TrEMBL
Match: A0A5C7I6E5 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_011844 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 1   MEVEAFSKQIENLKLTENE-KAKVIDIGDEDLEAADKNLQNATICKVLSSNLIIGDIFKT 60
           M  E  +K  + L +TE E  A  +++   D     K L    + KVL+S L+  ++F  
Sbjct: 1   MNAEEIAKLCDALSITEKEMPAHTLNVTLTD--RGKKRLAMCIVGKVLTSRLVKKEVFID 60

Query: 61  IMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGF 120
           +M +IW + G V ++    N F  +F+N +D+ ++  GG W+FD+A ++FDEP G+    
Sbjct: 61  VMSKIWRVSGGVDIEPIKGNIFAFYFTNDEDRMRVLRGGPWSFDRAIIIFDEPTGTRDIS 120

Query: 121 EWEFKYANFWVHLHNLPLICFCRKWAKVLGTRLENLSKSNLTIKGSAKGHVFR 173
              F Y +FWV +HNLPL+C   +    LG+ +  +   +  I   A G   R
Sbjct: 121 NLRFNYVDFWVQIHNLPLLCMNEEIGITLGSLIGEVRDYDSGITSDASGRYIR 171

[Close]

BLAST of Tan0003555 vs. ExPASy TrEMBL
Match: A0A5C7HZD3 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_009557 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-18
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 13  LKLTENEKAKV---IDIGDE-------DLEAADKNLQNATIC---KVLSSNLIIGDIFKT 72
           + ++ENE A +   + IG++       D++  DK  Q   +C   KVL+S ++  + FK 
Sbjct: 40  ITMSENEIASLCNALSIGEKESPAKILDVKLKDKGEQRLALCLVGKVLTSKIVNREAFKD 99

Query: 73  IMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGF 132
           +M RIW++ G V ++    N F CHF+N + +K+I  GG W FD+A ++F+EP G+    
Sbjct: 100 VMKRIWHINGGVEIEAIKDNIFECHFTNLEARKRILSGGPWRFDRAIIIFEEPMGTGDID 159

Query: 133 EWEFKYANFWVHLHNLPLICFCRKWAKVLGTRLENLSKSNLTIKGSAKGHVFR 173
              F    FWV +HNL L+C   +    LG  +  +   +L    +  G   R
Sbjct: 160 NMFFNKTKFWVQVHNLSLLCMSEEIGLFLGNMIREVRNIDLEAGKNGSGRFIR 212

[Close]

BLAST of Tan0003555 vs. ExPASy TrEMBL
Match: A0A6J1CQJ5 (uncharacterized protein LOC111013413 OS=Momordica charantia OX=3673 GN=LOC111013413 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-17
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 1   MEVEAFSKQIENLKLTENEKAKVIDIGDEDLEAADKNLQNATICKVLSSNLIIGDIFKTI 60
           M  E  S+Q+E LKLT+ EK ++ D+G++++E  DK  Q + +CK+L+   I G++FK +
Sbjct: 1   MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNM 60

Query: 61  MPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGFE 120
           MPRIW +   V +++ G N F C F   +DK KI   G   FDK+ ++ +EPR +    E
Sbjct: 61  MPRIW-VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSFFDKSMVMLEEPRANCNFNE 120

Query: 121 WEF 124
            E+
Sbjct: 121 LEY 122

[Close]

BLAST of Tan0003555 vs. ExPASy TrEMBL
Match: A0A5C7HWV8 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015215 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 49/173 (28.32%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 1   MEVEAFSKQIENLKLTENE-KAKVIDIGDEDLEAADKNLQNATICKVLSSNLIIGDIFKT 60
           M  +   K  + L + E +  A+ +D+  + +  ++  L  + + KVL   LI  ++F +
Sbjct: 1   MNADEIIKLCDGLMIKEKKGPARTLDVSLKKM--SENRLAMSLVGKVLKKKLINNEVFIS 60

Query: 61  IMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDKKKITEGGLWTFDKAFMLFDEPRGSYRGF 120
           +M +IW + G V ++    N F  +FSN +D+++I +GG WTFD+A ++FD+P  +    
Sbjct: 61  VMNKIWRVNGGVQIKPVEGNIFVFYFSNLEDRQRILKGGPWTFDRATIVFDKPASAGEIQ 120

Query: 121 EWEFKYANFWVHLHNLPLICFCRKWAKVLGTRLENLSKSNLTIKGSAKGHVFR 173
           + +F+  +FWV +HNL L+CF  +    LG+ +  +   +L  +        R
Sbjct: 121 QMKFQLVDFWVQIHNLLLLCFTEEIGSFLGSMIGEVHDMDLVARSDGSSRFLR 171

[Close]

BLAST of Tan0003555 vs. ExPASy TrEMBL
Match: A0A5C7H473 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024043 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 55/180 (30.56%), Postives = 82/180 (45.56%), Query Frame = 0


Query: 32  EAADKNLQNATICKVLSSNLIIGDIFKTIMPRIWNLEGKVSMQNRGTNTFFCHFSNTKDK 91
           EA  + L N+ + KVLS  ++  D FK +M +IW     V ++    N F   F NT+DK
Sbjct: 32  EAVLQRLANSLVGKVLSPKIVHRDGFKAVMKKIWQTRDGVEIETVDGNIFTFQFGNTEDK 91

Query: 92  KKITEGGLWTFDKAFMLFDEPRGSYRGFEWEFKYANFWVHLHNLPLICFCRKWAKVLGTR 151
           K+I  GG W F+ A ++ +EPRG       +F  A FWV +HN PLIC   +  + LG  
Sbjct: 92  KRIISGGPWCFNDALIVMEEPRGMGNVQHMKFNKAEFWVQIHNAPLICMSEEIRRFLGCM 151

Query: 152 LENLSK---------------------SNLTIKGSAKGHVFRDCDHYHQDSE---EDFMF 188
           +  +                        N   +    GH  +DC    ++ E   E+F+F
Sbjct: 152 IGEVMDFDGDVLGDGVESVMLIKYERLPNFCFRCGLLGHTMKDCPEKPKNLENKKEEFLF 211

The following BLAST results are available for this feature:

BLAST of Tan0003555 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003555 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG64850.1	4.1e-18	31.79	hypothetical protein EZV62_011844 [Acer yangbiense]	[more]
TXG62563.1	5.4e-18	31.79	hypothetical protein EZV62_009557 [Acer yangbiense]	[more]
XP_022143536.1	4.6e-17	39.02	uncharacterized protein LOC111013413 [Momordica charantia]	[more]
TXG60642.1	2.3e-16	28.32	hypothetical protein EZV62_015215 [Acer yangbiense]	[more]
TXG51519.1	3.0e-16	30.56	hypothetical protein EZV62_024043 [Acer yangbiense]	[more]

BLAST of Tan0003555 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7I6E5	2.0e-18	31.79	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01184...	[more]
A0A5C7HZD3	2.6e-18	31.79	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00955...	[more]
A0A6J1CQJ5	2.2e-17	39.02	uncharacterized protein LOC111013413 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5C7HWV8	1.1e-16	28.32	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015215 PE=3 SV=1	[more]
A0A5C7H473	1.4e-16	30.56	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02404...	[more]

BLAST of Tan0003555 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 32..155 e-value: 4.4E-16 score: 58.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003555.1	Tan0003555.1	mRNA