![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Tan0003500 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTCTTTCAATGATGAGTTATGCTCATCTCCCTAGTTCCTTTTGGGGTTACGCAGTGGAGACTGCAGTATACGTTTTGAATAGTGTGCCCTCAAAAAGTGTTTCTGAAACACCTTTTGAACTCTAGAAAGGACGTAAAGGTAGTTTATGTCACTTCAGAATTTGGGGTTGTCCAGCACATGTGCTTGTGACAAATCCAAAGAAATTGGATTCACGTTCAAAGTTATGCTTATTCATAGGATACCCAAAAGAAACAAGAGGTGGTTTATTCTATGATCTTAAGGAAAATAAGGTTTTTGTGTCGACAAATGCCATTTTCTTAGAGGAGGACCACATAAGGGACCACAAACCAAAAAGTAAAGTAGTGTTGAGTGAGTTAGACGGAACAATAGCAAAGGTTGCTAAAAAGAACACTAGTACGTCAACAAGAGTTGTTGATACTAGTTTGTCTAGTCAAGAGAGTCCATCTCAAGAGTTGAGTATGCCTCGACGTAGTGGGAGGGTTGTAATACAGCCTAACCGTTACATGGGTTTAGCTGAAACCCAAGTTGTTATACCAGATGACAACTGCGAGGATCCATTGACTTATAATCAAGCAATGGTTGACAAAGACAAAGACAAATGGGTCATAGCAATGGACCAAGAAATGGAGTCTATGTACTTCAATTCTGTTTGGGATCTTGTAGATAAGCCTGATGGGGTAAAACCTATAGGTTGTAAGTGGATCTACAAGAGGAAGCGTGGTGTAGATGGAAGGTGCAAACCTTTAAAGCTAGACTAG ATGGTTCTTTCAATGATGAGTTATGCTCATCTCCCTAGTTCCTTTTGGGGTTACGCAGTGGAGACTGCAGTATACGTTTTGAATAGTGTGCCCTCAAAAACACATGTGCTTGTGACAAATCCAAAGAAATTGGATTCACGTTCAAAGTTATGCTTATTCATAGGATACCCAAAAGAAACAAGAGGTGGTTTATTCTATGATCTTAAGGAAAATAAGGTTTTTGTGTCGACAAATGCCATTTTCTTAGAGGAGGACCACATAAGGGACCACAAACCAAAAAGTAAAGTAGTGTTGAGTGAGTTAGACGGAACAATAGCAAAGGTTGCTAAAAAGAACACTAGTACGTCAACAAGAGTTGTTGATACTAGTTTGTCTAGTCAAGAGAGTCCATCTCAAGAGTTGAGTATGCCTCGACGTAGTGGGAGGGTTGTAATACAGCCTAACCGTTACATGGGTTTAGCTGAAACCCAAGTTGTTATACCAGATGACAACTGCGAGGATCCATTGACTTATAATCAAGCAATGGTTGACAAAGACAAAGACAAATGGGTCATAGCAATGGACCAAGAAATGGAGTCTATGTACTTCAATTCTGTTTGGGATCTTGTAGATAAGCCTGATGGGGTAAAACCTATAGGTTGTAAGTGGATCTACAAGAGGAAGCGTGGTGTAGATGGAAGGTGCAAACCTTTAAAGCTAGACTAG ATGGTTCTTTCAATGATGAGTTATGCTCATCTCCCTAGTTCCTTTTGGGGTTACGCAGTGGAGACTGCAGTATACGTTTTGAATAGTGTGCCCTCAAAAACACATGTGCTTGTGACAAATCCAAAGAAATTGGATTCACGTTCAAAGTTATGCTTATTCATAGGATACCCAAAAGAAACAAGAGGTGGTTTATTCTATGATCTTAAGGAAAATAAGGTTTTTGTGTCGACAAATGCCATTTTCTTAGAGGAGGACCACATAAGGGACCACAAACCAAAAAGTAAAGTAGTGTTGAGTGAGTTAGACGGAACAATAGCAAAGGTTGCTAAAAAGAACACTAGTACGTCAACAAGAGTTGTTGATACTAGTTTGTCTAGTCAAGAGAGTCCATCTCAAGAGTTGAGTATGCCTCGACGTAGTGGGAGGGTTGTAATACAGCCTAACCGTTACATGGGTTTAGCTGAAACCCAAGTTGTTATACCAGATGACAACTGCGAGGATCCATTGACTTATAATCAAGCAATGGTTGACAAAGACAAAGACAAATGGGTCATAGCAATGGACCAAGAAATGGAGTCTATGTACTTCAATTCTGTTTGGGATCTTGTAGATAAGCCTGATGGGGTAAAACCTATAGGTTGTAAGTGGATCTACAAGAGGAAGCGTGGTGTAGATGGAAGGTGCAAACCTTTAAAGCTAGACTAG MVLSMMSYAHLPSSFWGYAVETAVYVLNSVPSKTHVLVTNPKKLDSRSKLCLFIGYPKETRGGLFYDLKENKVFVSTNAIFLEEDHIRDHKPKSKVVLSELDGTIAKVAKKNTSTSTRVVDTSLSSQESPSQELSMPRRSGRVVIQPNRYMGLAETQVVIPDDNCEDPLTYNQAMVDKDKDKWVIAMDQEMESMYFNSVWDLVDKPDGVKPIGCKWIYKRKRGVDGRCKPLKLD Homology
BLAST of Tan0003500 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.4e-18 Identity = 82/281 (29.18%), Postives = 119/281 (42.35%), Query Frame = 0
BLAST of Tan0003500 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 7.7e-04 Identity = 27/110 (24.55%), Postives = 50/110 (45.45%), Query Frame = 0
BLAST of Tan0003500 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 1.0e-03 Identity = 19/50 (38.00%), Postives = 27/50 (54.00%), Query Frame = 0
BLAST of Tan0003500 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 322.0 bits (824), Expect = 4.2e-84 Identity = 166/258 (64.34%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 320.1 bits (819), Expect = 1.6e-83 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 2.0e-84 Identity = 166/258 (64.34%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 5.9e-84 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 5.9e-84 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 5.9e-84 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 7.8e-84 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
BLAST of Tan0003500 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 55.8 bits (133), Expect = 5.3e-08 Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 0
BLAST of Tan0003500 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) ) HSP 1 Score: 45.4 bits (106), Expect = 7.1e-05 Identity = 19/50 (38.00%), Postives = 27/50 (54.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|