Tan0003490 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTTTCGCAAACACCTCCACCCTCCGCTACTCTCTCCGCCGCAGCGACGGCGCTGATGATCAACTCCTCCAAGTCCGATTGGGGTATTCCAGCCGTTTGATCTCCCGATCGCCGTTCGTCGGACTTCCGTACGATATCCTCCAAGAAACTCCGTCGACTCCAATGGCGGATGCTCTGTTCCCTCTGCCTCTACGAGAGCTCGAAGATCCGTTACTATGCCAGGCTTACGTGGTTGAATTGCTGTCCTTCTTCAACCTCCATCCCCTCAGCTGCAACCCCATTGGTCGGAAGGTCGCGTCGTTCGTGGTTCAGTTGGCCGCCGGAGACTACGACACGAAGTTCCAGTTGGTCGCTGAAATTGACTACATCCAAATGTTTTGGATGGAAGAGCAGTGGAGTTCTGTTCGTGTGGAGAATAATGTTGGGCGTGATCGTGTAATGGTGGAGGTTGAGGAGAGGGTGGTTCTCGACGAAGCTCCACCGCCGCCGGCGAAGCATAAATTCGAGGTATTTAGGCAAGAAGAGCTGGGAGAATGCAGTGTGTGTTACGAATCTTACGATGAATTGAACTTGAAGGGAGGCGAGAAGGAGGTGGCCAGAATCCCATGCGGTCATGTCTATCACAAATCCTGCATTCTCACCTGGTTTCAAAGGAGCAACACATGTCCTTTGTGTAGAAGGAAATTAAATTAG ATGCCTTTCGCAAACACCTCCACCCTCCGCTACTCTCTCCGCCGCAGCGACGGCGCTGATGATCAACTCCTCCAAGTCCGATTGGGGTATTCCAGCCGTTTGATCTCCCGATCGCCGTTCGTCGGACTTCCGTACGATATCCTCCAAGAAACTCCGTCGACTCCAATGGCGGATGCTCTGTTCCCTCTGCCTCTACGAGAGCTCGAAGATCCGTTACTATGCCAGGCTTACGTGGTTGAATTGCTGTCCTTCTTCAACCTCCATCCCCTCAGCTGCAACCCCATTGGTCGGAAGGTCGCGTCGTTCGTGGTTCAGTTGGCCGCCGGAGACTACGACACGAAGTTCCAGTTGGTCGCTGAAATTGACTACATCCAAATGTTTTGGATGGAAGAGCAGTGGAGTTCTGTTCGTGTGGAGAATAATGTTGGGCGTGATCGTGTAATGGTGGAGGTTGAGGAGAGGGTGGTTCTCGACGAAGCTCCACCGCCGCCGGCGAAGCATAAATTCGAGGTATTTAGGCAAGAAGAGCTGGGAGAATGCAGTGTGTGTTACGAATCTTACGATGAATTGAACTTGAAGGGAGGCGAGAAGGAGGTGGCCAGAATCCCATGCGGTCATGTCTATCACAAATCCTGCATTCTCACCTGGTTTCAAAGGAGCAACACATGTCCTTTGTGTAGAAGGAAATTAAATTAG ATGCCTTTCGCAAACACCTCCACCCTCCGCTACTCTCTCCGCCGCAGCGACGGCGCTGATGATCAACTCCTCCAAGTCCGATTGGGGTATTCCAGCCGTTTGATCTCCCGATCGCCGTTCGTCGGACTTCCGTACGATATCCTCCAAGAAACTCCGTCGACTCCAATGGCGGATGCTCTGTTCCCTCTGCCTCTACGAGAGCTCGAAGATCCGTTACTATGCCAGGCTTACGTGGTTGAATTGCTGTCCTTCTTCAACCTCCATCCCCTCAGCTGCAACCCCATTGGTCGGAAGGTCGCGTCGTTCGTGGTTCAGTTGGCCGCCGGAGACTACGACACGAAGTTCCAGTTGGTCGCTGAAATTGACTACATCCAAATGTTTTGGATGGAAGAGCAGTGGAGTTCTGTTCGTGTGGAGAATAATGTTGGGCGTGATCGTGTAATGGTGGAGGTTGAGGAGAGGGTGGTTCTCGACGAAGCTCCACCGCCGCCGGCGAAGCATAAATTCGAGGTATTTAGGCAAGAAGAGCTGGGAGAATGCAGTGTGTGTTACGAATCTTACGATGAATTGAACTTGAAGGGAGGCGAGAAGGAGGTGGCCAGAATCCCATGCGGTCATGTCTATCACAAATCCTGCATTCTCACCTGGTTTCAAAGGAGCAACACATGTCCTTTGTGTAGAAGGAAATTAAATTAG MPFANTSTLRYSLRRSDGADDQLLQVRLGYSSRLISRSPFVGLPYDILQETPSTPMADALFPLPLRELEDPLLCQAYVVELLSFFNLHPLSCNPIGRKVASFVVQLAAGDYDTKFQLVAEIDYIQMFWMEEQWSSVRVENNVGRDRVMVEVEERVVLDEAPPPPAKHKFEVFRQEELGECSVCYESYDELNLKGGEKEVARIPCGHVYHKSCILTWFQRSNTCPLCRRKLN Homology
BLAST of Tan0003490 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2) HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy Swiss-Prot
Match: Q9D0C1 (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 6.0e-09 Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.1e-08 Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 6.6e-08 Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 6.6e-08 Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of Tan0003490 vs. NCBI nr
Match: KAG6605222.1 (E3 ubiquitin-protein ligase AMFR, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 298.5 bits (763), Expect = 4.9e-77 Identity = 160/232 (68.97%), Postives = 181/232 (78.02%), Query Frame = 0
BLAST of Tan0003490 vs. NCBI nr
Match: XP_022947841.1 (NEP1-interacting protein-like 1 [Cucurbita moschata]) HSP 1 Score: 297.4 bits (760), Expect = 1.1e-76 Identity = 159/232 (68.53%), Postives = 180/232 (77.59%), Query Frame = 0
BLAST of Tan0003490 vs. NCBI nr
Match: XP_023006825.1 (NEP1-interacting protein-like 1 [Cucurbita maxima]) HSP 1 Score: 290.0 bits (741), Expect = 1.8e-74 Identity = 156/234 (66.67%), Postives = 176/234 (75.21%), Query Frame = 0
BLAST of Tan0003490 vs. NCBI nr
Match: XP_023534304.1 (uncharacterized protein LOC111795903 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 288.5 bits (737), Expect = 5.1e-74 Identity = 157/231 (67.97%), Postives = 173/231 (74.89%), Query Frame = 0
BLAST of Tan0003490 vs. NCBI nr
Match: KAG6605180.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 287.0 bits (733), Expect = 1.5e-73 Identity = 152/230 (66.09%), Postives = 171/230 (74.35%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 5.3e-77 Identity = 159/232 (68.53%), Postives = 180/232 (77.59%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 8.5e-75 Identity = 156/234 (66.67%), Postives = 176/234 (75.21%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 1.0e-72 Identity = 152/231 (65.80%), Postives = 170/231 (73.59%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1) HSP 1 Score: 282.7 bits (722), Expect = 1.4e-72 Identity = 152/230 (66.09%), Postives = 170/230 (73.91%), Query Frame = 0
BLAST of Tan0003490 vs. ExPASy TrEMBL
Match: A0A5D3BYE9 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00110 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39 Identity = 92/231 (39.83%), Postives = 138/231 (59.74%), Query Frame = 0
BLAST of Tan0003490 vs. TAIR 10
Match: AT4G12210.1 (RING/U-box superfamily protein ) HSP 1 Score: 62.4 bits (150), Expect = 5.5e-10 Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0
BLAST of Tan0003490 vs. TAIR 10
Match: AT4G12190.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.5 bits (145), Expect = 2.1e-09 Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 0
BLAST of Tan0003490 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 2.8e-09 Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 0
BLAST of Tan0003490 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 3.6e-09 Identity = 23/62 (37.10%), Postives = 34/62 (54.84%), Query Frame = 0
BLAST of Tan0003490 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein ) HSP 1 Score: 58.5 bits (140), Expect = 8.0e-09 Identity = 30/68 (44.12%), Postives = 36/68 (52.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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