Tan0003301 (gene) Snake gourd v1

Overview


Name	Tan0003301
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DUF4228 domain protein
Location	LG01: 18228485 .. 18228799 (+)
RNA-Seq Expression	Tan0003301
Synteny	Tan0003301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATTGTACGAGCAACAAATATTTGGCTGATACAATGCCAATGAGCGACGACGACGAGGAGGCAGTGGAGATGGTGAAGAGGAGGCTAAATGCCGACGACAGAGCTCCGAAATCTTCGACGGGGACTACGATGGAGTTGAAGATCAGGATCACAAAAAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAGGAGCTTCCGGTGACGGAGCTGTTATCGCAATTGATCGACGTCGGCGATGCATTCGAGAGTAATCACCGGGGATCATGGCGGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

mRNA sequence

ATGGGAAATTGTACGAGCAACAAATATTTGGCTGATACAATGCCAATGAGCGACGACGACGAGGAGGCAGTGGAGATGGTGAAGAGGAGGCTAAATGCCGACGACAGAGCTCCGAAATCTTCGACGGGGACTACGATGGAGTTGAAGATCAGGATCACAAAAAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAGGAGCTTCCGGTGACGGAGCTGTTATCGCAATTGATCGACGTCGGCGATGCATTCGAGAGTAATCACCGGGGATCATGGCGGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

Coding sequence (CDS)

ATGGGAAATTGTACGAGCAACAAATATTTGGCTGATACAATGCCAATGAGCGACGACGACGAGGAGGCAGTGGAGATGGTGAAGAGGAGGCTAAATGCCGACGACAGAGCTCCGAAATCTTCGACGGGGACTACGATGGAGTTGAAGATCAGGATCACAAAAAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAGGAGCTTCCGGTGACGGAGCTGTTATCGCAATTGATCGACGTCGGCGATGCATTCGAGAGTAATCACCGGGGATCATGGCGGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

Protein sequence

MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKLLSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEVN

Homology

[Close]

BLAST of Tan0003301 vs. NCBI nr
Match: XP_038904231.1 (uncharacterized protein LOC120090574 [Benincasa hispida])

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-38
Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMSD+DEEAVE V+RRL   D A K S  TT ELKIRITKRELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDEDEEAVETVRRRLVVHDGARKCSANTTTELKIRITKRELEKL 60

Query: 61  LSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEVN 105
           LSKVDVEELPVTELLSQLIDVGDAFES H+ SWRPSLQSIPEVN
Sbjct: 61  LSKVDVEELPVTELLSQLIDVGDAFESTHQRSWRPSLQSIPEVN 104

[Close]

BLAST of Tan0003301 vs. NCBI nr
Match: XP_008463409.1 (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.5e-36
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMSDD+EE  EM++RRL  + RA K S  TT ELKIRITK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 61  LSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEVN 105
           L KVD+EELPV ELLS+LIDVGDAFES HR SW+PSLQSIPEVN
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Tan0003301 vs. NCBI nr
Match: XP_031739098.1 (uncharacterized protein LOC116402843 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MGNCTSNKYLADT-MPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEK 60
           MGNCTSNKYLA+T +PMSDDDEE  EM++RRL   + A K S  TT ELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEVN 105
           LL KVDVEELPVTELLS+LIDVGD FES H+ SWRPSLQSIPEVN
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of Tan0003301 vs. NCBI nr
Match: KAG6577418.1 (hypothetical protein SDJN03_24992, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-33
Identity = 78/103 (75.73%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMS ++EE VE VKR+LNADD A + +T TT E+KIR+TKRELEKL
Sbjct: 1   MGNCTSNKYLAETMPMS-EEEEVVETVKRKLNADDGASRGTTTTTTEVKIRMTKRELEKL 60

Query: 61  LSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEV 104
           LSKV+VEELPVTELL Q+I+VGD  ES HR SWRPSLQSIPE+
Sbjct: 61  LSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPEL 102

[Close]

BLAST of Tan0003301 vs. NCBI nr
Match: XP_022985276.1 (uncharacterized protein LOC111483315 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTG---TTMELKIRITKREL 60
           MGNCTSNKYLA+TMPMS ++EE VE +KR+LNADD A +SS G   TT E+KIR+TKREL
Sbjct: 1   MGNCTSNKYLAETMPMS-EEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKREL 60

Query: 61  EKLLSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEV 104
           EKLLSKV+VEELPVTELL QLI+VGD  ES HR SWRPSLQSIPE+
Sbjct: 61  EKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPEL 105

[Close]

BLAST of Tan0003301 vs. ExPASy TrEMBL
Match: A0A5D3BTQ9 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00050 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-36
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMSDD+EE  EM++RRL  + RA K S  TT ELKIRITK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 61  LSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEVN 105
           L KVD+EELPV ELLS+LIDVGDAFES HR SW+PSLQSIPEVN
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Tan0003301 vs. ExPASy TrEMBL
Match: A0A1S3CJ77 (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-36
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMSDD+EE  EM++RRL  + RA K S  TT ELKIRITK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 61  LSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEVN 105
           L KVD+EELPV ELLS+LIDVGDAFES HR SW+PSLQSIPEVN
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Tan0003301 vs. ExPASy TrEMBL
Match: A0A0A0L2D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MGNCTSNKYLADT-MPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEK 60
           MGNCTSNKYLA+T +PMSDDDEE  EM++RRL   + A K S  TT ELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEVN 105
           LL KVDVEELPVTELLS+LIDVGD FES H+ SWRPSLQSIPEVN
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of Tan0003301 vs. ExPASy TrEMBL
Match: A0A6J1J7P7 (uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTG---TTMELKIRITKREL 60
           MGNCTSNKYLA+TMPMS ++EE VE +KR+LNADD A +SS G   TT E+KIR+TKREL
Sbjct: 1   MGNCTSNKYLAETMPMS-EEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKREL 60

Query: 61  EKLLSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEV 104
           EKLLSKV+VEELPVTELL QLI+VGD  ES HR SWRPSLQSIPE+
Sbjct: 61  EKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPEL 105

[Close]

BLAST of Tan0003301 vs. ExPASy TrEMBL
Match: A0A6J1EVV2 (uncharacterized protein LOC111438472 OS=Cucurbita moschata OX=3662 GN=LOC111438472 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMS ++EE VE VKR+LNADD A + +  TT E+KIR+TKRELEKL
Sbjct: 1   MGNCTSNKYLAETMPMS-EEEEVVETVKRKLNADDGASRGT--TTTEVKIRMTKRELEKL 60

Query: 61  LSKVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEV 104
           LSKV+VEELPVTELL Q+I+VGD  ES HR SWRPSLQSIPE+
Sbjct: 61  LSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPEL 100

[Close]

BLAST of Tan0003301 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-08
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 18  DDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKLLSKVDVEELPVTELLSQ 77
           DD+++  +++    N    +  SS+    E+KIRITK+ELE L+  + ++ L   E+LS+
Sbjct: 37  DDNDDGEKLLGETSNVTSTS-SSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSK 96

Query: 78  LI-DVGDAF------ESNHRGSWRPSLQSIPEVN 105
           LI + GD         +NH   W+P LQSIPE++
Sbjct: 97  LIFEGGDQIGFSAVDVTNHHQPWKPVLQSIPEMD 129

[Close]

BLAST of Tan0003301 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-06
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 36  RAPKSSTGTTMELKIRITKRELEKLLSKVDVEELPVTE--LLSQLIDVGDAFESNHRGSW 95
           R  KSS   + E+KIR+TK++L  LLSKV+V +L   +      +++     E+N +  W
Sbjct: 46  RDSKSSV-PSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLW 105

Query: 96  RPSLQSIPEVN 105
           RP LQSIPEVN
Sbjct: 106 RPVLQSIPEVN 115

[Close]

BLAST of Tan0003301 vs. TAIR 10
Match: AT3G10120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03890.1); Has 57 Blast hits to 57 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.0e-04
Identity = 32/102 (31.37%), Postives = 49/102 (48.04%), Query Frame = 0


Query: 6   SNKYLADTMP---MSDDDEEAVEMVKRRLNADDRAPKSSTGTTMELKIRITKRELEKLLS 65
           S K++  TM     ++ + E  E  + RL       K  T   + +K+ ++K+ELEKLL 
Sbjct: 74  SIKHMKKTMKKVRFANPEVEKEEQEEDRLTDCCDNTKEKTNGVVRVKMVVSKQELEKLLQ 133

Query: 66  KVDVEELPVTELLSQLIDVGDAFESNHRGSWRPSLQSIPEVN 105
              V E+    L  Q   + D  +  H+  WRP L SIPE +
Sbjct: 134 GGSVHEMVYRTLAKQ--HLCDDDDECHKEGWRPLLDSIPETD 173

The following BLAST results are available for this feature:

BLAST of Tan0003301 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003301 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904231.1	1.6e-38	84.62	uncharacterized protein LOC120090574 [Benincasa hispida]	[more]
XP_008463409.1	5.5e-36	77.88	PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF42...	[more]
XP_031739098.1	2.3e-34	78.10	uncharacterized protein LOC116402843 [Cucumis sativus]	[more]
KAG6577418.1	3.4e-33	75.73	hypothetical protein SDJN03_24992, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022985276.1	2.2e-32	75.47	uncharacterized protein LOC111483315 [Cucurbita maxima]	[more]

BLAST of Tan0003301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTQ9	2.7e-36	77.88	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9...	[more]
A0A1S3CJ77	2.7e-36	77.88	uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=...	[more]
A0A0A0L2D8	1.1e-34	78.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1	[more]
A0A6J1J7P7	1.1e-32	75.47	uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315...	[more]
A0A6J1EVV2	1.2e-31	74.76	uncharacterized protein LOC111438472 OS=Cucurbita moschata OX=3662 GN=LOC1114384...	[more]

BLAST of Tan0003301 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	4.0e-08	36.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	2.9e-06	43.66	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]
AT3G10120.1	6.0e-04	31.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..103
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003301.1	Tan0003301.1	mRNA