Tan0003237 (gene) Snake gourd v1

Overview


Name	Tan0003237
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Protein of unknown function (DUF 3339)
Location	LG10: 15719581 .. 15719787 (-)
RNA-Seq Expression	Tan0003237
Synteny	Tan0003237

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTGGGGCCCAGTTTTTGTGGCTGTGGTTCTGTTTCTTCTGCTATCCCCAGGCCTTCTCTTTCAAATCCCCGGCCACCATGGATTCGTCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATGCCCTCATCTTCTTCGCCCTAATTTCCCTCTTCACCTTCGTCGTTCAACTCCACATCTACATCTAA

mRNA sequence

ATGGCGGATTGGGGCCCAGTTTTTGTGGCTGTGGTTCTGTTTCTTCTGCTATCCCCAGGCCTTCTCTTTCAAATCCCCGGCCACCATGGATTCGTCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATGCCCTCATCTTCTTCGCCCTAATTTCCCTCTTCACCTTCGTCGTTCAACTCCACATCTACATCTAA

Coding sequence (CDS)

ATGGCGGATTGGGGCCCAGTTTTTGTGGCTGTGGTTCTGTTTCTTCTGCTATCCCCAGGCCTTCTCTTTCAAATCCCCGGCCACCATGGATTCGTCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATGCCCTCATCTTCTTCGCCCTAATTTCCCTCTTCACCTTCGTCGTTCAACTCCACATCTACATCTAA

Protein sequence

MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTFVVQLHIYI

Homology

[Close]

BLAST of Tan0003237 vs. NCBI nr
Match: XP_038900916.1 (uncharacterized protein LOC120087962 [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 4.4e-26
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGHH FVQFGNFQTSGASIFIH+LIFFALISLFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHRFVQFGNFQTSGASIFIHSLIFFALISLFTF 60

Query: 61 VVQLHIYI 69
          V+QLHIYI
Sbjct: 61 VIQLHIYI 68

[Close]

BLAST of Tan0003237 vs. NCBI nr
Match: XP_008454011.1 (PREDICTED: uncharacterized protein LOC103494560 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 5.8e-26
Identity = 63/68 (92.65%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQIPGHH F+QFGNFQTSG+SIFIH+LIFFALISLFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHSFIQFGNFQTSGSSIFIHSLIFFALISLFTF 60

Query: 61 VVQLHIYI 69
          V+QLHIYI
Sbjct: 61 VIQLHIYI 68

[Close]

BLAST of Tan0003237 vs. NCBI nr
Match: XP_004152115.1 (uncharacterized protein LOC101215007 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQIPGH+ FVQFGNFQTSGASIFIH+LIFFALISLFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60

Query: 61 VVQLHIYI 69
          V+QLHIYI
Sbjct: 61 VIQLHIYI 68

[Close]

BLAST of Tan0003237 vs. NCBI nr
Match: XP_022932694.1 (uncharacterized protein LOC111439163 [Cucurbita moschata] >XP_022972135.1 uncharacterized protein LOC111470767 [Cucurbita maxima] >XP_023539087.1 uncharacterized protein LOC111799839 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.6 bits (309), Expect = 6.4e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGHH F+QFGNFQTSGASIFIH+LIFFALI LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 VVQLHIYI 69
          V+QLHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of Tan0003237 vs. NCBI nr
Match: XP_022145182.1 (uncharacterized protein LOC111014687 [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGHH FV+FGNF TSGASIFIH+LIFFAL+ LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTF 60

Query: 61 VVQLHIYI 69
          VVQLHIYI
Sbjct: 61 VVQLHIYI 68

[Close]

BLAST of Tan0003237 vs. ExPASy TrEMBL
Match: A0A1S3BX44 (uncharacterized protein LOC103494560 OS=Cucumis melo OX=3656 GN=LOC103494560 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 63/68 (92.65%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQIPGHH F+QFGNFQTSG+SIFIH+LIFFALISLFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHSFIQFGNFQTSGSSIFIHSLIFFALISLFTF 60

Query: 61 VVQLHIYI 69
          V+QLHIYI
Sbjct: 61 VIQLHIYI 68

[Close]

BLAST of Tan0003237 vs. ExPASy TrEMBL
Match: A0A6J1I7P7 (uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGHH F+QFGNFQTSGASIFIH+LIFFALI LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 VVQLHIYI 69
          V+QLHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of Tan0003237 vs. ExPASy TrEMBL
Match: A0A6J1EXQ9 (uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC111439163 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGHH F+QFGNFQTSGASIFIH+LIFFALI LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 VVQLHIYI 69
          V+QLHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of Tan0003237 vs. ExPASy TrEMBL
Match: A0A6J1CVS1 (uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014687 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.0e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGHH FV+FGNF TSGASIFIH+LIFFAL+ LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTF 60

Query: 61 VVQLHIYI 69
          VVQLHIYI
Sbjct: 61 VVQLHIYI 68

[Close]

BLAST of Tan0003237 vs. ExPASy TrEMBL
Match: A0A6A1UN09 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004505 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.7e-20
Identity = 47/68 (69.12%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          M+DWGPVFVAVVLF+LL+PGLLFQ+PGHHG+V+FGNFQTSGASI IH+L++F LI +F  
Sbjct: 1  MSDWGPVFVAVVLFVLLTPGLLFQVPGHHGYVEFGNFQTSGASILIHSLLYFGLICIFFL 60

Query: 61 VVQLHIYI 69
           +++H+Y+
Sbjct: 61 AIKVHLYL 68

[Close]

BLAST of Tan0003237 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 93.6 bits (231), Expect = 6.6e-20
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPV VAV+LF+LL+PGLLFQIP     V+FGN QTSGASI +H +IFF LI++FT 
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 VVQLHIY 68
           ++LHIY
Sbjct: 61 AIRLHIY 67

[Close]

BLAST of Tan0003237 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-19
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          MADWGPV +AV+LF++LSPGLLFQIP     V+FGN QTSGASI +HA+IFF LI++FT 
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 VVQLHIY 68
           + +HIY
Sbjct: 61 AINVHIY 67

[Close]

BLAST of Tan0003237 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 87.4 bits (215), Expect = 4.7e-18
Identity = 37/68 (54.41%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          M+DWGPV V V+LF++L+PGLLFQ+PG   +V+FGNFQTS  S+ +H+L++F+L+ +F  
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 VVQLHIYI 69
           +++HIYI
Sbjct: 61 ALKIHIYI 68

[Close]

BLAST of Tan0003237 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-16
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTF 60
          M DWGPVFVAV LF+LL+PGLL Q+PG    V+FG FQTSG S+ +H LI+F L+ +   
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 VVQLHI 67
           +Q+HI
Sbjct: 61 ALQIHI 66

[Close]

BLAST of Tan0003237 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-16
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 2  ADWGPVFVAVVLFLLLSPGLLFQIPGHHGFVQFGNFQTSGASIFIHALIFFALISLFTFV 61
          ADWGPV VAVVLF++LSPGLLFQ+P     ++ GN  TSG SI +HA++FFA+I++    
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 VQLHIYI 69
          +Q+HI+I
Sbjct: 64 IQIHIHI 70

The following BLAST results are available for this feature:

BLAST of Tan0003237 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003237 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900916.1	4.4e-26	94.12	uncharacterized protein LOC120087962 [Benincasa hispida]	[more]
XP_008454011.1	5.8e-26	92.65	PREDICTED: uncharacterized protein LOC103494560 [Cucumis melo]	[more]
XP_004152115.1	1.3e-25	94.12	uncharacterized protein LOC101215007 [Cucumis sativus]	[more]
XP_022932694.1	6.4e-25	89.71	uncharacterized protein LOC111439163 [Cucurbita moschata] >XP_022972135.1 unchar...	[more]
XP_022145182.1	1.9e-24	89.71	uncharacterized protein LOC111014687 [Momordica charantia]	[more]

BLAST of Tan0003237 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BX44	2.8e-26	92.65	uncharacterized protein LOC103494560 OS=Cucumis melo OX=3656 GN=LOC103494560 PE=...	[more]
A0A6J1I7P7	3.1e-25	89.71	uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767...	[more]
A0A6J1EXQ9	3.1e-25	89.71	uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1CVS1	9.0e-25	89.71	uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6A1UN09	8.7e-20	69.12	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004505 PE=4 SV=1	[more]

BLAST of Tan0003237 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48660.1	6.6e-20	67.16	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.1e-19	65.67	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	4.7e-18	54.41	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	2.0e-16	57.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G01940.1	5.8e-16	56.72	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 2.0E-31 score: 108.0
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..68
None	No IPR available	PANTHER	PTHR33128:SF55	PROTEIN, PUTATIVE (DUF 3339)-RELATED	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003237.1	Tan0003237.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane