Tan0003125 (gene) Snake gourd v1

Overview
NameTan0003125
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L29, chloroplastic-like
LocationLG01: 14053166 .. 14056570 (+)
RNA-Seq ExpressionTan0003125
SyntenyTan0003125
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGAGAGCTTATCTTCATCTTCAAGAGCAGCTGGGCTTTCTTCTTCGAACAACAGCGCTGTGACTGAGCGAAACCATACACAAACTCTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGCTCCCTTCAAAAGTTCTTAGCTCCACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACGGCATGTACCGGAGGCCCCAATTCGTCGGTGGTAATGATGGCGAAGAGGGACGTGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAGCTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGGTACTTCTTTTCCCTCATTGATGGATTCTTAATTAATTTTGAGTTCAATTGAAATGTGGCTTTTATGTTCGTCTTATACATCTAATCTGTGTGAATTATATTTTAAGTTTTACCGTCTCCCATCCTCCACATTTTTGCTTTTGTGCTAAATTTATTGGTAGGATTAAATTTTGGGGCTCAATGGCTTTTAATGGTGGGTTTTGTAGCTGTTGGAATCTAAGACTATTGGCTATTGTTTGCCGCCAAAAATGAAAGAATAGTAGCAAATTAGCATATGAAAGGTAAAAAGAAAAAAAAAAAATGTAGAGCCATACCCTTATTCTAGGAATCCGTTTAGGTTCAAATTTCAGTTCACAATCCAGAAAAATTAACCAAAACTATATTTCACCATGTTGAGAAGAGGTTATTGAAGCTACATACGAAGGAAGATAGAAAAACCCAATGCAATTAGGGAGCCAGTTAGAATTGCTCTGAAACTTAGAAATCCAATGGGAATCAGGAAATGTAATTGAAATTAGGATTTCTAGGCACTAAAAACTTAAAATTCGACTAAGATTAACTCCAAATGTAACTTCTTATCAGAAATAGCTATCTCAACACATTTTTGATACGTTTAGGTTCAGCAAACACTATCTTTTAAAAACTCGTCAATGCCTTCATGCTAACATTTTATTTACGATTCCCAAAATGCCTGAAGCATGAATGAGTCTATAACTGTGGAAATCACAATTCAATTTGGGTTCTAACTTATCTTTATACGAAGCTAGTTATTTGATAAGCTAAACCTATTTTGATCCCCGAAGCACTAGAATGTTGAATGTATAAGAGAGAGGTATTTGCATTTGAACAATATGTAGCCTTCTCATGACTTTTCTATCAAAACTTCCGAATGCTTAGTGCATTATATGGATGTCGAATTGTCTGCTGGGCATCTCACTGTGCCACTGAACCAAAGTCCTGAATGATCAGAAGTTGTTGAACAGAAAAAAATTTATTTACACTTTACGAATTTAGTATAACTGCACTTTTTTTTTAAAAAAAAAATTCACTTAACACTGTAATAGACTTGTTAGTGGTAAGACCGGCTGTTCTCATAGTTTTGTCGTGTCAAGCTAAGAAACATGGACACTTTAGTTTGGCTAGCGTGTCCGTGTCCGACACTTTATGAAAACATATCAAACACTTGCTAGCACGATAGATATGTGTTGAAAAACGCTAGTCGTACAAAGTCAATATAGGTCCAACATTTGTTAGACACTCATCAAACACTTTTTTTTTTCTTCAGTACATCCATCAAACACTTGTTAAATGTACTAAATAGACATATAATGTTGAGGATCCCCACATTGGAAAAATGTAGAGTAACATCACAATTTATAAGATACATGGGCTACACCTCTCATTACCAATTGATTTTAAGATGGAATCCATGTAATCTATTATGGTATCCAAAACCCAAAAAAACTCAAACGTGTATTCGGTCTAAAAATTGAAATTGGATCCAATACAAGAATAGTGAACCCAAAGTGGCACCATTTTGAGGGGCATGTTGAGGATCCCACATTGAAAAAATGTGAGGTCACAATTTATAAGATACATGGGGTACTCCTCTCATTGCCAATTAAAAGTTTACAAAATGACATGTCACCGTATCTGTGTCATGTCATATCTGTGTCTCGTATCCGTGCTTTTTAGATGTCAAGTTTGAGATTTAGGCAGCAGACTTTTTGCATCTATAGTCGAATTCCACACCTTCGGGACAACGTGATAAGTTGAGATGTTTGTAGATACCCTTTAAAGTGTTGGTTCATAGACTCCAACTTGACAACTTACTACTTAAGATCCTTACTGTGTAGCCTGCTCGAAAATTGGTAGTGTGGATCATGAATCTAGGCGTGGGGCTTGATGATCCCGGCTACCAATAAAATGGTTGCAAAATAACCTCAGCAGCATAATATTTGCAGAAATCGACTAATATATATGTTGATGCAGGACAGTCAGGAAGTTTATATTATATATGGTTCCTCTCTCCTTATTCTTATTCTTTTTATCTCCTCATAATTTTGGTTTCCAACATCATGGCTATACATCCCACGTTTTTTTTTTTTTAATTCAATAACATGTGGGATGGGCATTCGAACGGCTGAGTTTTTGGTCAGGAATCTTAATCAATTGAGTTATGCTTAGGTTGGCGTCGTACATCCAATGTTTGGACGTGCCTAACAACTTTCATTCCACATCTCTCATACATCCACAAAACTTGGGGTTTTGTTTGAACCATTAATTTGTTATTGTTTGACCAATGACAGATTGCTCGGATGCTAACTGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGGAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAAAAGTATTGTCGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCGGCAGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATGCTCTCAACCAATATTGTAGCTTTATGAGTTCAAGATGTTGAGAATGCTATTTAAACTATGTTTTTCTGAAAAAATCTAATCTTGTACTTAGCAGCTTATGCATAAATGGAAATAGACTAATTAGCAAATATATAATTTTTTCCATAATGATTCTTCAAATTTAAATTCTATACTGTTAGGAAAGAAGCCCACTAAAGTAAAGCCCAAATGAAGCCCAAGTGTTATATTTTAGTTAGGGTATCTGTTATGTATTAGTTGAGTTTTTTGTAATTTGTCAAAACCATTTTTCTGGGTTCGTTAGATAAGTTGTTAGGAGTTTTTTTCACCTCTGTTAACTTTATATATACCCTATTCTCTCAAGGTAGAAAGTGTGATCTTAACAATGATTTTCTTCTTGAAAAGATAATAAAGAGAACAGAGGTTTTTCTCCTAGCAATTCTTTGTGTTGATCAAAACATGGTATCAGAGCTTCTTGTCTAGCA

mRNA sequence

GGCGAGAGCTTATCTTCATCTTCAAGAGCAGCTGGGCTTTCTTCTTCGAACAACAGCGCTGTGACTGAGCGAAACCATACACAAACTCTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGCTCCCTTCAAAAGTTCTTAGCTCCACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACGGCATGTACCGGAGGCCCCAATTCGTCGGTGGTAATGATGGCGAAGAGGGACGTGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAGCTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACTGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGGAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAAAAGTATTGTCGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCGGCAGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATGCTCTCAACCAATATTGTAGCTTTATGAGTTCAAGATGTTGAGAATGCTATTTAAACTATGTTTTTCTGAAAAAATCTAATCTTGTACTTAGCAGCTTATGCATAAATGGAAATAGACTAATTAGCAAATATATAATTTTTTCCATAATGATTCTTCAAATTTAAATTCTATACTGTTAGGAAAGAAGCCCACTAAAGTAAAGCCCAAATGAAGCCCAAGTGTTATATTTTAGTTAGGGTATCTGTTATGTATTAGTTGAGTTTTTTGTAATTTGTCAAAACCATTTTTCTGGGTTCGTTAGATAAGTTGTTAGGAGTTTTTTTCACCTCTGTTAACTTTATATATACCCTATTCTCTCAAGGTAGAAAGTGTGATCTTAACAATGATTTTCTTCTTGAAAAGATAATAAAGAGAACAGAGGTTTTTCTCCTAGCAATTCTTTGTGTTGATCAAAACATGGTATCAGAGCTTCTTGTCTAGCA

Coding sequence (CDS)

ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGCTCCCTTCAAAAGTTCTTAGCTCCACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACGGCATGTACCGGAGGCCCCAATTCGTCGGTGGTAATGATGGCGAAGAGGGACGTGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAGCTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACTGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGGAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAAAAGTATTGTCGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCGGCAGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Homology
[Close]
BLAST of Tan0003125 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.2e-48
Identity = 111/168 (66.07%), Postives = 139/168 (82.74%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSS--TSKSSFNGLQIRFPFSFRVP-PKTACTGGPNSSVVMM 60
           M++LSIA+P + ++  +  +S  ++ SSF+G++I+   S RVP   T  +  P  SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KR+ ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of Tan0003125 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 5.3e-39
Identity = 99/165 (60.00%), Postives = 125/165 (75.76%), Query Frame = 0 

Query: 7   ASPSSVSLPSKVLSS-TSKSSFNGLQ---IRFPFSFRVPPKTACTGGPNSSVVMMAKRDV 66
           ++P S  L S   S+  +KSSF+GL+   +    S R+  +T     P SSVV+M K++ 
Sbjct: 9   STPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQT-----PPSSVVVMVKKED 68

Query: 67  ELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRERE 126
           ELKE+R KT E++NEE++ LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKRERE
Sbjct: 69  ELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKRERE 128

Query: 127 IEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS 168
           IE+GVGKRLSRKLD+ WK+SIVVRPPPSLKKL+E+  A  EAEK+
Sbjct: 129 IEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]
BLAST of Tan0003125 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.6e-35
Identity = 80/106 (75.47%), Postives = 96/106 (90.57%), Query Frame = 0 

Query: 52  SSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRI 111
           +++V MAKR+ EL+EIRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRKRI
Sbjct: 56  AAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRI 115

Query: 112 ARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE 158
           ARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 116 ARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of Tan0003125 vs. ExPASy Swiss-Prot
Match: Q49ZG0 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 62  VELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRER 121
           ++ KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV RER
Sbjct: 1   MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVARER 60

Query: 122 EIEEG 127
           EIE+G
Sbjct: 61  EIEQG 65

[Close]
BLAST of Tan0003125 vs. ExPASy Swiss-Prot
Match: Q4L8A6 (50S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=rpmC PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 0 

Query: 62  VELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRER 121
           ++ KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV RER
Sbjct: 1   MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVARER 60

Query: 122 EIEE 126
           EIEE
Sbjct: 61  EIEE 64

[Close]
BLAST of Tan0003125 vs. NCBI nr
Match: XP_038903244.1 (50S ribosomal protein L29, chloroplastic [Benincasa hispida])

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-73
Identity = 159/168 (94.64%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           MINLSIASPS+VS+P KVL+STSKSSFNGLQIRFPFSFRVPPKTACTGG NSSVVMMAKR
Sbjct: 1   MINLSIASPSTVSIPLKVLTSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSSVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELKEIRAK+TEEI EEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKSTEEIKEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Tan0003125 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 158/168 (94.05%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           MINLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Tan0003125 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           M+NLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Tan0003125 vs. NCBI nr
Match: XP_023531622.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71
Identity = 157/168 (93.45%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           MINLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Tan0003125 vs. NCBI nr
Match: KAG6577307.1 (50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015397.1 50S ribosomal protein L29, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           M+NLSIASPSSV++P+K LSSTSKSSFNGLQIRFPFSFRVPPK ACTGG NS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Tan0003125 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.9e-73
Identity = 158/168 (94.05%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           MINLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Tan0003125 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           M+NLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Tan0003125 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.4e-71
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           MINLSIASPSSV++P+K LSSTSKSSFNGLQIRFPFSFRVPPK AC GG NS VVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Tan0003125 vs. ExPASy TrEMBL
Match: A0A6J1C3N4 (50S ribosomal protein L29, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008086 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 155/168 (92.26%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           MINLSIASPS+VSLPS VLSSTSKSSF GLQIR PFS RV  KT C G  NSSVVMMAKR
Sbjct: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Tan0003125 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 149/164 (90.85%), Postives = 157/164 (95.73%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKR 60
           M+NLSIASPSSV++P+K LSSTSKSSFNGLQIRFPFS RVPPK ACTGG NS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  DVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           + ELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA 165
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 164

[Close]
BLAST of Tan0003125 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 191.8 bits (486), Expect = 4.4e-49
Identity = 111/168 (66.07%), Postives = 139/168 (82.74%), Query Frame = 0 

Query: 1   MINLSIASPSSVSLPSKVLSS--TSKSSFNGLQIRFPFSFRVP-PKTACTGGPNSSVVMM 60
           M++LSIA+P + ++  +  +S  ++ SSF+G++I+   S RVP   T  +  P  SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KR+ ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:
BLAST of Tan0003125 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJP36.2e-4866.0750S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P822485.3e-3960.0050S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P... [more]
Q9SWI64.6e-3575.4750S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1[more]
Q49ZG01.4e-0446.1550S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (... [more]
Q4L8A63.2e-0446.8850S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=27... [more]
BLAST of Tan0003125 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903244.11.8e-7394.6450S ribosomal protein L29, chloroplastic [Benincasa hispida][more]
XP_022941582.12.0e-7294.0550S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1... [more]
XP_022977189.14.5e-7293.4550S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
XP_023531622.11.0e-7193.4550S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG6577307.12.9e-7191.6750S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of Tan0003125 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FMW59.9e-7394.0550S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IQR32.2e-7293.4550S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1JCM61.4e-7192.2650S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1C3N43.9e-6992.2650S ribosomal protein L29, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1EMX43.9e-6990.8550S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of Tan0003125 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65220.14.4e-4966.07Ribosomal L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..168
NoneNo IPR availablePANTHERPTHR10916:SF1SUBFAMILY NOT NAMEDcoord: 1..168
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 1..168
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 65..121
e-value: 1.6066E-16
score: 67.5126
IPR036049Ribosomal protein L29/L35 superfamilyGENE3D1.10.287.310coord: 63..126
e-value: 4.6E-15
score: 57.3
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 63..124
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 66..121
e-value: 3.0E-16
score: 57.2
IPR001854Ribosomal protein L29/L35PFAMPF00831Ribosomal_L29coord: 65..121
e-value: 1.8E-14
score: 53.4
IPR001854Ribosomal protein L29/L35HAMAPMF_00374Ribosomal_L29coord: 62..121
score: 13.791933

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003125.1Tan0003125.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome