Tan0002930 (gene) Snake gourd v1

Overview


Name	Tan0002930
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	serine-rich protein-related
Location	LG09: 65184610 .. 65185509 (+)
RNA-Seq Expression	Tan0002930
Synteny	Tan0002930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATAGTATGACTTGACAGTTGAGCTTCCAAAATTTACCCCGAATAATTGTGATAGAGCAAACAGCAGTGAACACGTGGCTTCATCATAGAGCTTCAGATCTGGAAATACAGTAATCTCACAAACCCACGCCCGTTTATATAAAGCCCCATCTCTGATTTCCCAATTGCTTTGCAGAAATGGCAGCCAACGGCAAAATCAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGACGGCGAGGCCGTGGCGGCTCACTCATGTTCATCCAAAGGCCCATGCCTCTGCTCCCCCACCACTCATCCCGGTTCCTTCCGGTGTCGCCTTCACCGTTCCAATTCGTTGCCTTGGACCAGACACTCCAAATCCACCGCCTCTTCCGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTGCCTGATTTCATTTTTCCTTCAATTTCGCCGGAAGAAAATAAGAAATAATGAAATCCTCTGTAAATATTTGTCTCTCTCTGTCTCTGTCTCTGGCACTCTCACTCGACTCGTATCATTATATATCAGAGTCGGTTTCTGTTTCTCCAGAAGGCTATAGGTTTCTGGTTTGTCTGTTTGTTTTGACAGTGATGCTTTGATTTTAATTTCAGATATCCACTCTGATTTCTGGATAACTCTCCTTTCTTTTTGTTTGAAGCTCTTCGCTGTAATCGTATTATGCGGTGGATTTTGATAATGGAACAGCAACTTTTAGGGCTGATGTAAAATTGTATTTAATCCTGTTTGTCTCCTAGGAATTTCTTTTTCAATTTTCCCGCAAACTGCCTCATAATTCTACTTGAAACTGAACTCGCAGCGCTATTTTGAATTCGTCAATATTAACGATTCAATATATCATTTACAAGAAGG

mRNA sequence

ATAATAGTATGACTTGACAGTTGAGCTTCCAAAATTTACCCCGAATAATTGTGATAGAGCAAACAGCAGTGAACACGTGGCTTCATCATAGAGCTTCAGATCTGGAAATACAGTAATCTCACAAACCCACGCCCGTTTATATAAAGCCCCATCTCTGATTTCCCAATTGCTTTGCAGAAATGGCAGCCAACGGCAAAATCAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGACGGCGAGGCCGTGGCGGCTCACTCATGTTCATCCAAAGGCCCATGCCTCTGCTCCCCCACCACTCATCCCGGTTCCTTCCGGTGTCGCCTTCACCGTTCCAATTCGTTGCCTTGGACCAGACACTCCAAATCCACCGCCTCTTCCGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTGCCTGATTTCATTTTTCCTTCAATTTCGCCGGAAGAAAATAAGAAATAATGAAATCCTCTGTAAATATTTGTCTCTCTCTGTCTCTGTCTCTGGCACTCTCACTCGACTCGTATCATTATATATCAGAGTCGGTTTCTGTTTCTCCAGAAGGCTATAGGTTTCTGGTTTGTCTGTTTGTTTTGACAGTGATGCTTTGATTTTAATTTCAGATATCCACTCTGATTTCTGGATAACTCTCCTTTCTTTTTGTTTGAAGCTCTTCGCTGTAATCGTATTATGCGGTGGATTTTGATAATGGAACAGCAACTTTTAGGGCTGATGTAAAATTGTATTTAATCCTGTTTGTCTCCTAGGAATTTCTTTTTCAATTTTCCCGCAAACTGCCTCATAATTCTACTTGAAACTGAACTCGCAGCGCTATTTTGAATTCGTCAATATTAACGATTCAATATATCATTTACAAGAAGG

Coding sequence (CDS)

ATGGCAGCCAACGGCAAAATCAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGACGGCGAGGCCGTGGCGGCTCACTCATGTTCATCCAAAGGCCCATGCCTCTGCTCCCCCACCACTCATCCCGGTTCCTTCCGGTGTCGCCTTCACCGTTCCAATTCGTTGCCTTGGACCAGACACTCCAAATCCACCGCCTCTTCCGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTGCCTGA

Protein sequence

MAANGKISISIPSSAKSAGDGEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSTASSADASHTSDLSPKSVESA

Homology

[Close]

BLAST of Tan0002930 vs. NCBI nr
Match: KAG6589904.1 (hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023574.1 hypothetical protein SDJN02_14600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 9.8e-31
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M+A+GKI ISIPSSAKS GDG+ VAAH+CSSKG CLCSPTTHPGSFRCRLHRSNSLPWTR
Sbjct: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60

Query: 61 HSKSTA-SSADASHTSDLSPKSVES 85
          HSK+TA SSADASHTSDLSPKSVES
Sbjct: 61 HSKTTASSSADASHTSDLSPKSVES 85

[Close]

BLAST of Tan0002930 vs. NCBI nr
Match: KAA0046595.1 (hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK00101.1 hypothetical protein E5676_scaffold596G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 2.7e-28
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M +  K+SISIPS+AKSAGDG+ VA HSCSSK  CLCSPTTHPGSFRCRLHRSNSLPW+R
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 HSKSTASSADASHTSDLSPKSVESA 86
           SKSTA+SADAS+TSDLSPKSVESA
Sbjct: 61 QSKSTAASADASNTSDLSPKSVESA 85

[Close]

BLAST of Tan0002930 vs. NCBI nr
Match: KAE8653119.1 (hypothetical protein Csa_020123 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 9.5e-26
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 6   KISISIPSSAKSAGDGEAVA--AHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSK 65
           K+SI IPS+AKSAG+G+ V   +HSCSSKG CLCSPTTHPGSFRCRLHRSNSLPW+R SK
Sbjct: 41  KMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK 100

Query: 66  STASSADASHTSDLSPKSVESA 86
           STA+SADAS+TSDLSPKSVESA
Sbjct: 101 STAASADASNTSDLSPKSVESA 122

[Close]

BLAST of Tan0002930 vs. NCBI nr
Match: OUZ99929.1 (hypothetical protein BVC80_9069g38 [Macleaya cordata])

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-09
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVAAHSCSS-KGPCLCSPTTHPGSFRCRLHRSNSLPW- 60
          M ++G I++S+  S K  G+G+ VA  S +S KG CLCSPTTH GSFRCR HRS S  W 
Sbjct: 1  MTSHGTINVSL--SPKGNGNGQPVATASTNSPKGQCLCSPTTHNGSFRCRFHRSLSSTWR 60

Query: 61 TRHSKSTASSADASHTSDLSPKSVES 85
           + SKS  +++ A+ T+ +SPKSVES
Sbjct: 61 MKRSKSMPANSTAAATTSISPKSVES 84

[Close]

BLAST of Tan0002930 vs. NCBI nr
Match: KAF3961111.1 (hypothetical protein CMV_014232 [Castanea mollissima])

HSP 1 Score: 70.5 bits (171), Expect = 8.0e-09
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          MA++G +++   S++  +G+GEAV   S S KG CLCSPTTH GSFRCR HRS+S  W +
Sbjct: 1  MASHGNLTV---STSPKSGEGEAVTTSSGSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 HSKSTASSADASHTSDLSPKSVES 85
           SK+  ++      +  SPKSVES
Sbjct: 61 RSKAMPANGS---VAAFSPKSVES 78

[Close]

BLAST of Tan0002930 vs. ExPASy TrEMBL
Match: A0A5D3BJV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00570 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M +  K+SISIPS+AKSAGDG+ VA HSCSSK  CLCSPTTHPGSFRCRLHRSNSLPW+R
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 HSKSTASSADASHTSDLSPKSVESA 86
           SKSTA+SADAS+TSDLSPKSVESA
Sbjct: 61 QSKSTAASADASNTSDLSPKSVESA 85

[Close]

BLAST of Tan0002930 vs. ExPASy TrEMBL
Match: A0A0A0LWJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVA--AHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPW 60
          M +  K+SI IPS+AKSAG+G+ V   +HSCSSKG CLCSPTTHPGSFRCRLHRSNSLPW
Sbjct: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60

Query: 61 TRHSKSTASSADASHTSDLSPKSVESA 86
          +R SKSTA+SADAS+TSDLSPKSVESA
Sbjct: 61 SRQSKSTAASADASNTSDLSPKSVESA 87

[Close]

BLAST of Tan0002930 vs. ExPASy TrEMBL
Match: A0A200PNZ0 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVAAHSCSS-KGPCLCSPTTHPGSFRCRLHRSNSLPW- 60
          M ++G I++S+  S K  G+G+ VA  S +S KG CLCSPTTH GSFRCR HRS S  W 
Sbjct: 1  MTSHGTINVSL--SPKGNGNGQPVATASTNSPKGQCLCSPTTHNGSFRCRFHRSLSSTWR 60

Query: 61 TRHSKSTASSADASHTSDLSPKSVES 85
           + SKS  +++ A+ T+ +SPKSVES
Sbjct: 61 MKRSKSMPANSTAAATTSISPKSVES 84

[Close]

BLAST of Tan0002930 vs. ExPASy TrEMBL
Match: A0A6A1UK22 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006893 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.7e-09
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          MA+ G   +S+ ++ KS G GEAV   S S KG CLCSPTTH GSFRCRLHRS+S  W +
Sbjct: 1  MASRGS-QLSVSTTPKS-GKGEAVTGASDSPKGQCLCSPTTHKGSFRCRLHRSSS-AWMK 60

Query: 61 HSKSTASSADASHTSDLSPKSVESA 86
           SKS  +S   S  + LSPKSVES+
Sbjct: 61 RSKSMPAS---SSVAALSPKSVESS 79

[Close]

BLAST of Tan0002930 vs. ExPASy TrEMBL
Match: A0A5N6QHE2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.7e-09
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1  MAANGKISISIPSSAKSAGDGEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          MA++G +++   S++  +G  E V   S S KG CLCSPTTH GSFRCR HRS+S  W +
Sbjct: 1  MASHGSLTV---STSPKSGKEEPVGGASSSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 HSKSTASSADASHTSDLSPKSVES 85
           SKS    A  S  + +SPKS+ES
Sbjct: 61 RSKSV--PAKTSSVASMSPKSIES 79

[Close]

BLAST of Tan0002930 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 5  GKISISIPSSAKSAGD--GEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHS 64
          G + + I S   SA +     ++  +  +K  CLCSPTTHPGSFRCR+HRS SL  T+  
Sbjct: 12 GIMKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK-- 71

Query: 65 KSTASSADASHTSDLSPKSVES 85
               S +A+   D  PK  +S
Sbjct: 72 -----SIEAASLLDSPPKPADS 86

[Close]

BLAST of Tan0002930 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 5  GKISISIPSSAKSAGD--GEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHS 64
          G + + I S   SA +     ++  +  +K  CLCSPTTHPGSFRCR+HRS SL  T+  
Sbjct: 12 GIMKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK-- 71

Query: 65 KSTASSADASHTSDLSPKSVES 85
               S +A+   D  PK  +S
Sbjct: 72 -----SIEAASLLDSPPKPADS 86

[Close]

BLAST of Tan0002930 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 19 GDGEAVAAHSCSSKGPCLCSPTTHPGSFRCRLHRSNS 56
          G G    + S S +  CLC+PTTHPGSFRCR HR N+
Sbjct: 49 GGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNA 85

[Close]

BLAST of Tan0002930 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 5.7e-05
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 31  SKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSTAS 68
           S+  C+CSPTTHPGSFRC LH++ + P   H + TAS
Sbjct: 122 SRRRCMCSPTTHPGSFRCSLHKNVANP---HGQGTAS 155

[Close]

BLAST of Tan0002930 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 5.7e-05
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 31  SKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSTAS 68
           S+  C+CSPTTHPGSFRC LH++ + P   H + TAS
Sbjct: 122 SRRRCMCSPTTHPGSFRCSLHKNVANP---HGQGTAS 155

The following BLAST results are available for this feature:

BLAST of Tan0002930 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589904.1	9.8e-31	88.24	hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0046595.1	2.7e-28	82.35	hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK001...	[more]
KAE8653119.1	9.5e-26	81.71	hypothetical protein Csa_020123 [Cucumis sativus]	[more]
OUZ99929.1	6.2e-09	52.33	hypothetical protein BVC80_9069g38 [Macleaya cordata]	[more]
KAF3961111.1	8.0e-09	48.81	hypothetical protein CMV_014232 [Castanea mollissima]	[more]

BLAST of Tan0002930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJV5	1.3e-28	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LWJ0	1.6e-26	78.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1	[more]
A0A200PNZ0	3.0e-09	52.33	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1	[more]
A0A6A1UK22	8.7e-09	56.47	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006893 PE=4 SV=1	[more]
A0A5N6QHE2	8.7e-09	48.81	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1	[more]

BLAST of Tan0002930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67910.1	1.2e-05	40.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.2e-05	40.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13227.1	1.2e-05	56.76	serine-rich protein-related	[more]
AT5G25280.1	5.7e-05	56.76	serine-rich protein-related	[more]
AT5G25280.2	5.7e-05	56.76	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..85
None	No IPR available	PANTHER	PTHR33132:SF37	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 3..83
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 3..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002930.1	Tan0002930.1	mRNA