Tan0002898 (gene) Snake gourd v1

Overview
NameTan0002898
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG09: 60865247 .. 60865516 (+)
RNA-Seq ExpressionTan0002898
SyntenyTan0002898
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTGTGACGTAGGGGAAGAGGGCTTGCCAGAGACTCCTACTAGCAGGCGTAATACATATGACATGTCTTCTAGATGTACTGGCAGCAAAAGGAAAAGATCATGCTTCCAAACTGAAATGATTGATGTTGTGCGGACAACAATGAACATGCAAACAAATCACATGCAAAGGCTTCTATCATGGCAGAAGGAAAAATATGAGTTGGAGGCTGCACGACGGAAGGAAGTGGTCGACCTTTTGTACCAAATAGAAGGGCTCCGAGCATGA

mRNA sequence

ATGCACTGTGACGTAGGGGAAGAGGGCTTGCCAGAGACTCCTACTAGCAGGCGTAATACATATGACATGTCTTCTAGATGTACTGGCAGCAAAAGGAAAAGATCATGCTTCCAAACTGAAATGATTGATGTTGTGCGGACAACAATGAACATGCAAACAAATCACATGCAAAGGCTTCTATCATGGCAGAAGGAAAAATATGAGTTGGAGGCTGCACGACGGAAGGAAGTGGTCGACCTTTTGTACCAAATAGAAGGGCTCCGAGCATGA

Coding sequence (CDS)

ATGCACTGTGACGTAGGGGAAGAGGGCTTGCCAGAGACTCCTACTAGCAGGCGTAATACATATGACATGTCTTCTAGATGTACTGGCAGCAAAAGGAAAAGATCATGCTTCCAAACTGAAATGATTGATGTTGTGCGGACAACAATGAACATGCAAACAAATCACATGCAAAGGCTTCTATCATGGCAGAAGGAAAAATATGAGTTGGAGGCTGCACGACGGAAGGAAGTGGTCGACCTTTTGTACCAAATAGAAGGGCTCCGAGCATGA

Protein sequence

MHCDVGEEGLPETPTSRRNTYDMSSRCTGSKRKRSCFQTEMIDVVRTTMNMQTNHMQRLLSWQKEKYELEAARRKEVVDLLYQIEGLRA
Homology
BLAST of Tan0002898 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-13
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 7   EEGLPETPTSRRNTYDMSSRCTGSKRKRSCFQTEMIDVVRTTMNMQTNHMQRLLSWQKEK 66
           +E   E  T R +    SSR  GSKRKR  FQ EMID++R+T+ MQ+ HM RL SWQKEK
Sbjct: 157 DEEPAEQSTGRASVLAESSR--GSKRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQKEK 216

Query: 67  YELEAARRKEVVDLLYQIEGL 88
           YELE  RRKEVV+ +Y I+GL
Sbjct: 217 YELEFGRRKEVVNAIYSIDGL 235

BLAST of Tan0002898 vs. NCBI nr
Match: XP_038877407.1 (uncharacterized protein LOC120069696 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 8.1e-12
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 7   EEGLPETPTSRRNTYDMSSRCTGSKRKRSCFQTEMIDVVRTTMNMQTNHMQRLLSWQKEK 66
           +E   E  T R +    SSR  GSKRKRS FQ EMID++R+T+ M + HM RL SWQK+K
Sbjct: 137 DEEPTEQSTGRTSIPVESSR--GSKRKRSSFQVEMIDIMRSTVEMHSTHMGRLASWQKKK 196

Query: 67  YELEAARRKEVVDLLYQIEGL 88
           YELE  R+KEVV+ +Y I+GL
Sbjct: 197 YELEFGRQKEVVNAIYNIDGL 215

BLAST of Tan0002898 vs. NCBI nr
Match: XP_038899910.1 (uncharacterized protein LOC120087100 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 9.0e-11
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 29  GSKRKRSCFQTEMIDVVRTTMNMQTNHMQRLLSWQKEKYELEAARRKEVVDLLYQIEGL 88
           GSKRKR  FQ EMID++R+T+ MQ+ HM RL SWQKEKYELE    KEVV+ +Y I+GL
Sbjct: 121 GSKRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQKEKYELEFEHWKEVVNAIYSIDGL 179

BLAST of Tan0002898 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 9.9e-10
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 7   EEGLPETPTSRRNTYDMSSRCTGSKRKRSCFQTEMIDVVRTTMNMQTNHMQRLLSWQKEK 66
           +E   E  T R +    SSR  GSKRKRS FQ EMID+V++T+ MQ+ HM RL SWQ EK
Sbjct: 157 DEEPAEQSTGRASVPTESSR--GSKRKRSSFQVEMIDIVKSTVEMQSTHMGRLASWQNEK 216

Query: 67  YELEAARRKEVVDLLYQIEGL 88
           YELE    KEVV+ +Y I+ L
Sbjct: 217 YELEL---KEVVNAIYNIDDL 232

BLAST of Tan0002898 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 4   DVGEEGLPETPTSRRNTYDMSSRCTGSKRKRSCFQTEMIDVVRTTMNMQTNHMQRLLSWQ 63
           D  EE LP TPTS+     + +   GSKRKRS + +EM+DVVRT M MQT H++++ +W 
Sbjct: 96  DAIEEDLPNTPTSKPT---IGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWP 155

Query: 64  KEKYELEAARRKEVVDLLYQIEGLRA 90
            +K E + ARRK V D L QI  L A
Sbjct: 156 DKKEEKKIARRKIVHDQLKQIPNLEA 178

BLAST of Tan0002898 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 4   DVGEEGLPETPTSRRNTYDMSSRCTGSKRKRSCFQTEMIDVVRTTMNMQTNHMQRLLSWQ 63
           D  EE LP TPTS+     + +   GSKRKRS + +EM+DVVRT M MQT H++++ +W 
Sbjct: 96  DAIEEDLPNTPTSKPT---IGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWP 155

Query: 64  KEKYELEAARRKEVVDLLYQIEGLRA 90
            +K E + ARRK V D L QI  L A
Sbjct: 156 DKKEEKKIARRKIVHDQLKQIPNLEA 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038896380.13.3e-1358.02uncharacterized protein LOC120084641 [Benincasa hispida][more]
XP_038877407.18.1e-1255.56uncharacterized protein LOC120069696 [Benincasa hispida][more]
XP_038899910.19.0e-1164.41uncharacterized protein LOC120087100 [Benincasa hispida][more]
XP_038887234.19.9e-1054.32uncharacterized protein LOC120077425 [Benincasa hispida][more]
XP_022158565.12.9e-0948.84uncharacterized protein LOC111025018 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DW731.4e-0948.84uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0002898.1Tan0002898.1mRNA