Tan0002815 (gene) Snake gourd v1

Overview


Name	Tan0002815
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transposon, En/Spm-like protein
Location	LG07: 46821649 .. 46821954 (+)
RNA-Seq Expression	Tan0002815
Synteny	Tan0002815

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAACTTCTCGAAGCATCATCACAGGAAGGATCTGAGCCAATCTCACAGTCAGAAGTTTGTAAAATAGTTTTGGTTACTCGATCAGGCCGCATAAAAGGACTTGGTTGGGACCGAAAATCTAGTTCGTCGTCTAGCGTCACATCTTCTTCCCAACATGAAAAAGAGCTTGAAAAGATGGTGGAGCAGATGCAAGTTGAGATTGGTACCTTAACGACGAAGTTGTCCTCATGGGAAGAAAGATGGGCTGAATTCACCAAGTACATGGATGAATGGCAGGGTGAAGGTTCTTCAAAGCCCTAG

mRNA sequence

ATGCAACAACTTCTCGAAGCATCATCACAGGAAGGATCTGAGCCAATCTCACAGTCAGAAGTTTGTAAAATAGTTTTGGTTACTCGATCAGGCCGCATAAAAGGACTTGGTTGGGACCGAAAATCTAGTTCGTCGTCTAGCGTCACATCTTCTTCCCAACATGAAAAAGAGCTTGAAAAGATGGTGGAGCAGATGCAAGTTGAGATTGGTACCTTAACGACGAAGTTGTCCTCATGGGAAGAAAGATGGGCTGAATTCACCAAGTACATGGATGAATGGCAGGGTGAAGGTTCTTCAAAGCCCTAG

Coding sequence (CDS)

ATGCAACAACTTCTCGAAGCATCATCACAGGAAGGATCTGAGCCAATCTCACAGTCAGAAGTTTGTAAAATAGTTTTGGTTACTCGATCAGGCCGCATAAAAGGACTTGGTTGGGACCGAAAATCTAGTTCGTCGTCTAGCGTCACATCTTCTTCCCAACATGAAAAAGAGCTTGAAAAGATGGTGGAGCAGATGCAAGTTGAGATTGGTACCTTAACGACGAAGTTGTCCTCATGGGAAGAAAGATGGGCTGAATTCACCAAGTACATGGATGAATGGCAGGGTGAAGGTTCTTCAAAGCCCTAG

Protein sequence

MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDRKSSSSSSVTSSSQHEKELEKMVEQMQVEIGTLTTKLSSWEERWAEFTKYMDEWQGEGSSKP

Homology

[Close]

BLAST of Tan0002815 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-13
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDR-----KSSSSSSVTSSSQHE 60
           MQ L++A +QEG EP++Q E C+ VL  R   +KGLG+       K  SSS+VTSS+ +E
Sbjct: 157 MQNLIKAPTQEGCEPVTQPEACRKVLGDRPDHVKGLGYGPQPTLCKRGSSSNVTSSTLYE 216

Query: 61  KELEKMVEQMQVEIGTLTTK-------LSSWEERWAEFTKYMDEWQGEGSS 100
           KELEK VE M+VE+  + T+       +S+WE+RW E +++M   QG+G S
Sbjct: 217 KELEKKVEDMEVEMREMKTENQRLKESVSTWEDRWNEISRFMAGRQGDGPS 267

[Close]

BLAST of Tan0002815 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-12
Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDRKSSSSSSVTSSSQHEKELEK 60
           MQ+L+EAS QE   P+S  EVCK VL  RSG IKGLG + K SSSSSVTS  Q +KELEK
Sbjct: 621 MQRLMEASFQEDPTPMSSVEVCKQVLGHRSGYIKGLGLNPKPSSSSSVTSYLQDKKELEK 680

Query: 61  MVEQMQVEI--------------GTLTTKLSSWEERWAEFTKYMDEWQGE 97
            +E+M+ E+                LT++LS WE RWAE    +   QG+
Sbjct: 681 KMEKMEDEMIQMKANYEHMKETNVALTSQLSMWEGRWAEIQNMLGRGQGK 730

[Close]

BLAST of Tan0002815 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-12
Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDRKSSSSSSVTSSSQHEKELEK 60
           MQ+L+EAS QE   P+S  EVCK VL  RSG IKGLG + K SSSSSVTS  Q +KELEK
Sbjct: 809 MQRLMEASFQEDPTPMSSVEVCKQVLGHRSGYIKGLGLNPKPSSSSSVTSYLQDKKELEK 868

Query: 61  MVEQMQVEI--------------GTLTTKLSSWEERWAEFTKYMDEWQGE 97
            +E+M+ E+                LT++LS WE RWAE    +   QG+
Sbjct: 869 KMEKMEDEMIQMKANYEHMKETNVALTSQLSMWEGRWAEIQNMLGRGQGK 918

[Close]

BLAST of Tan0002815 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-12
Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDRKSSSSSSVTSSSQHEKELEK 60
           MQ+L+EAS QE   P+S  EVCK VL  RSG IKGLG + K SSSSSVTS  Q +KELEK
Sbjct: 782 MQRLMEASFQEDPTPMSSVEVCKQVLGHRSGYIKGLGLNPKPSSSSSVTSYLQDKKELEK 841

Query: 61  MVEQMQVEI--------------GTLTTKLSSWEERWAEFTKYMDEWQGE 97
            +E+M+ E+                LT++LS WE RWAE    +   QG+
Sbjct: 842 KMEKMEDEMIQMKANYEHMKETNVALTSQLSMWEGRWAEIQNMLGRGQGK 891

[Close]

BLAST of Tan0002815 vs. NCBI nr
Match: KAF5949174.1 (hypothetical protein HYC85_015131 [Camellia sinensis])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 1  MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDRKSSSSSSVTSSSQHEKELEK 60
          M QL E SSQ G+ P++Q E+   VL  RSG ++G G   K SS+ + T+ SQ   E   
Sbjct: 1  MDQLREESSQPGATPLTQEEITVQVLGKRSGYLRGFGVGPKPSSAFNSTTRSQARDE--- 60

Query: 61 MVEQMQVEIGTLTTKLSSWEERWAEFTKYMDEWQGEGS 99
           V+ ++ E+ +L   + S+E R+ +F  +M + QG GS
Sbjct: 61 EVKGLKEEVASLKGIIQSYEGRFEQFEHFMRQMQGNGS 95

[Close]

BLAST of Tan0002815 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDR-----KSSSSSSVTSSSQHE 60
           MQ L++A +QEG EP++Q E C+ VL  R   +KGLG+       K  SSS+VTSS+ +E
Sbjct: 157 MQNLIKAPTQEGCEPVTQPEACRKVLGDRPDHVKGLGYGPQPTLCKRGSSSNVTSSTLYE 216

Query: 61  KELEKMVEQMQVEIGTLTTK-------LSSWEERWAEFTKYMDEWQGEGSS 100
           KELEK VE M+VE+  + T+       +S+WE+RW E +++M   QG+G S
Sbjct: 217 KELEKKVEDMEVEMREMKTENQRLKESVSTWEDRWNEISRFMAGRQGDGPS 267

[Close]

BLAST of Tan0002815 vs. ExPASy TrEMBL
Match: A0A7J7HBC1 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_015131 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 1  MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDRKSSSSSSVTSSSQHEKELEK 60
          M QL E SSQ G+ P++Q E+   VL  RSG ++G G   K SS+ + T+ SQ   E   
Sbjct: 1  MDQLREESSQPGATPLTQEEITVQVLGKRSGYLRGFGVGPKPSSAFNSTTRSQARDE--- 60

Query: 61 MVEQMQVEIGTLTTKLSSWEERWAEFTKYMDEWQGEGS 99
           V+ ++ E+ +L   + S+E R+ +F  +M + QG GS
Sbjct: 61 EVKGLKEEVASLKGIIQSYEGRFEQFEHFMRQMQGNGS 95

[Close]

BLAST of Tan0002815 vs. ExPASy TrEMBL
Match: A0A5D3BHT5 (Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001230 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 32/86 (37.21%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 1   MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWD------RKSSSSSSVTSSSQH 60
           M +L   SSQEGSEP+ +SE+CK VL  RSG +KG GW       R  +   +   ++ H
Sbjct: 229 MVELKTTSSQEGSEPLLESEICKRVLGKRSGHVKGQGWGPRLKNARNETIQHNTKETNAH 288

Query: 61  EKELEKMVEQMQVEIGTLTTKLSSWE 81
              ++ +VE  Q  I  +  +LS  E
Sbjct: 289 IAHMQSIVESQQATIEAILRRLSCQE 314

[Close]

BLAST of Tan0002815 vs. ExPASy TrEMBL
Match: A0A7J7IC48 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_002997 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1  MQQLLEASSQEGSEPISQSEVCKIVLVTRSGRIKGLGWDRKSSSSSSVTSSSQHEKELEK 60
          M QL E SSQ G+ P++Q E+   VL  R G ++G G   K SS+   T+ S   ++ E 
Sbjct: 1  MDQLREESSQPGATPLTQEEITVQVLGKRLGYLRGFGVGPKPSSAFKSTTRSSQARDEE- 60

Query: 61 MVEQMQVEIGTLTTKLSSWEERWAEFTKYMDEWQGEGS 99
           V+ ++ E+ +L   + S+E R+ +F  +M + QG GS
Sbjct: 61 -VKGLKEEVASLKGIIQSYEGRFEQFEHFMRQMQGNGS 96

The following BLAST results are available for this feature:

BLAST of Tan0002815 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002815 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156286.1	2.9e-13	45.05	uncharacterized protein LOC111023212 [Momordica charantia]	[more]
XP_038887413.1	2.4e-12	49.09	uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida]	[more]
XP_038887408.1	2.4e-12	49.09	poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida]	[more]
XP_038887409.1	2.4e-12	49.09	poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida]	[more]
KAF5949174.1	2.4e-04	37.76	hypothetical protein HYC85_015131 [Camellia sinensis]	[more]

BLAST of Tan0002815 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUH3	1.4e-13	45.05	uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A7J7HBC1	1.2e-04	37.76	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_015131 PE=4 SV=1	[more]
A0A5D3BHT5	5.9e-04	37.21	Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A7J7IC48	5.9e-04	35.71	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_002997 PE=4 SV=1	[more]

BLAST of Tan0002815 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002815.1	Tan0002815.1	mRNA