Tan0002752 (gene) Snake gourd v1

Overview
NameTan0002752
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 113087451 .. 113087669 (+)
RNA-Seq ExpressionTan0002752
SyntenyTan0002752
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCGGTTGCTTCTGTTAATGGCAGTTTTCACTCTTCTGGTCTCCGGGGAAAGCAAAGCGACAATGGGGGTCGTCGATCAACTTCCGCCGTCAAAAATGCAGGAGAAGCACCGGAAGCAGCTGCCGTCGCCTCCGTTGAGACACTCATTCAATGGGCTCTTTGCAAGCAAGAGGAAGGTCCCAAATACTTCGGATCCACTCCATAATCGTTGA

mRNA sequence

ATGGAAGCTCGGTTGCTTCTGTTAATGGCAGTTTTCACTCTTCTGGTCTCCGGGGAAAGCAAAGCGACAATGGGGGTCGTCGATCAACTTCCGCCGTCAAAAATGCAGGAGAAGCACCGGAAGCAGCTGCCGTCGCCTCCGTTGAGACACTCATTCAATGGGCTCTTTGCAAGCAAGAGGAAGGTCCCAAATACTTCGGATCCACTCCATAATCGTTGA

Coding sequence (CDS)

ATGGAAGCTCGGTTGCTTCTGTTAATGGCAGTTTTCACTCTTCTGGTCTCCGGGGAAAGCAAAGCGACAATGGGGGTCGTCGATCAACTTCCGCCGTCAAAAATGCAGGAGAAGCACCGGAAGCAGCTGCCGTCGCCTCCGTTGAGACACTCATTCAATGGGCTCTTTGCAAGCAAGAGGAAGGTCCCAAATACTTCGGATCCACTCCATAATCGTTGA

Protein sequence

MEARLLLLMAVFTLLVSGESKATMGVVDQLPPSKMQEKHRKQLPSPPLRHSFNGLFASKRKVPNTSDPLHNR
Homology
BLAST of Tan0002752 vs. NCBI nr
Match: KAA0064426.1 (hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK20161.1 hypothetical protein E5676_scaffold134G002930 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 52/72 (72.22%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MEARLLLLMAVFTLLVSGESKATMGV----VDQLPPSKMQEKHRKQ---LPSPPLR-HSF 60
          MEARLLLLMAV TLLVSG +KATMGV    VDQ P S MQEKHRK    L SPPLR H F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 61 NGLFASKRKVPN 65
          N LFASKRK  N
Sbjct: 61 NALFASKRKSMN 72

BLAST of Tan0002752 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 13 TLLVSGESKATMGV-----VDQLPPSKMQEKHRKQL----PSPPLRHSFNGLFASKRKVP 72
          TLLVSG++KATMG      +DQ P S MQEKHRK L      PP  H FN LFASKRKVP
Sbjct: 2  TLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKVP 61

BLAST of Tan0002752 vs. NCBI nr
Match: KDP41663.1 (hypothetical protein JCGZ_16070 [Jatropha curcas])

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 2  EARLLLLMAVFTLLVSGESKATMGV--VDQLPPSKMQEKHRKQLPSPPLRHSFNGLFASK 61
          + ++++L+ +++LLVSGE + TM V   D   P + QEKH++      LR SF+ LF+SK
Sbjct: 8  QKKIIVLILLYSLLVSGEKEETMAVTHADDKQP-RRQEKHQR------LRSSFDVLFSSK 67

Query: 62 RKVPNTSDPLHNR 73
          RKVPN SDPLHNR
Sbjct: 68 RKVPNASDPLHNR 73

BLAST of Tan0002752 vs. NCBI nr
Match: KAG6626451.1 (hypothetical protein CIPAW_15G049200 [Carya illinoinensis] >KAG6674546.1 hypothetical protein I3842_15G047900 [Carya illinoinensis] >KAG7943512.1 hypothetical protein I3843_15G043700 [Carya illinoinensis])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 4  RLLLLMAVFTLLVSGESKATMGV-VDQLPPSKMQEKHRKQLPSPPLRHSFNGLFASKRKV 63
          R L+ +A    LV  E +A + V V+ L P  MQEK +++     L+HSF+  F+SKRKV
Sbjct: 13 RKLMFLAFLAFLVCVEKEAGLVVGVNSLQPPNMQEKQQQRQRPKRLKHSFDAFFSSKRKV 72

Query: 64 PNTSDPLHN 72
          PN SDPLHN
Sbjct: 73 PNASDPLHN 81

BLAST of Tan0002752 vs. NCBI nr
Match: KAG2666233.1 (hypothetical protein I3760_15G047400 [Carya illinoinensis])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 4  RLLLLMAVFTLLVSGESKATMGV-VDQLPPSKMQEKHRKQLPSPPLRHSFNGLFASKRKV 63
          R L+ +A    LV  E +A + V V+ L P  MQEK +++     L+HSF+  F+SKRKV
Sbjct: 13 RKLMFLAFLAFLVCVEKEAGLVVGVNSLQPPNMQEKQQQRQRPKRLKHSFDAFFSSKRKV 72

Query: 64 PNTSDPLHN 72
          PN SDPLHN
Sbjct: 73 PNASDPLHN 81

BLAST of Tan0002752 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 55/81 (67.90%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 1  MEARLLLLMAVFTLLVSGESKATMGV-----VDQLPPSKMQEKHRKQL----PSPPLRHS 60
          MEARLLLLMAV TLLVSG++KATMG      +DQ P S MQEKHRK L      PP  H 
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 61 FNGLFASKRKVPNTSDPLHNR 73
          FN LFASKRKVPNT DP+HNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

BLAST of Tan0002752 vs. ExPASy TrEMBL
Match: A0A5D3D9C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002930 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.3e-12
Identity = 52/72 (72.22%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MEARLLLLMAVFTLLVSGESKATMGV----VDQLPPSKMQEKHRKQ---LPSPPLR-HSF 60
          MEARLLLLMAV TLLVSG +KATMGV    VDQ P S MQEKHRK    L SPPLR H F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 61 NGLFASKRKVPN 65
          N LFASKRK  N
Sbjct: 61 NALFASKRKSMN 72

BLAST of Tan0002752 vs. ExPASy TrEMBL
Match: A0A067L375 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 2  EARLLLLMAVFTLLVSGESKATMGV--VDQLPPSKMQEKHRKQLPSPPLRHSFNGLFASK 61
          + ++++L+ +++LLVSGE + TM V   D   P + QEKH++      LR SF+ LF+SK
Sbjct: 8  QKKIIVLILLYSLLVSGEKEETMAVTHADDKQP-RRQEKHQR------LRSSFDVLFSSK 67

Query: 62 RKVPNTSDPLHNR 73
          RKVPN SDPLHNR
Sbjct: 68 RKVPNASDPLHNR 73

BLAST of Tan0002752 vs. ExPASy TrEMBL
Match: A0A1R3HJP1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28570 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.9e-05
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 5  LLLLMAVFTLLVSGESK-----ATMGVVDQLPPSKMQEKHRKQLPSPPLRHSFNGLFASK 64
          +++L+ +F LLVSG+       A M V  Q          ++Q P   LRHSF+  F+SK
Sbjct: 17 VIVLLLLFLLLVSGDQNEESMFAAMNVHSQGDKENQTVNQKQQQPQQRLRHSFDAFFSSK 76

Query: 65 RKVPNTSDPLHNR 73
          R+VPN SDPLHNR
Sbjct: 77 RRVPNASDPLHNR 89

BLAST of Tan0002752 vs. ExPASy TrEMBL
Match: A0A6J5W5V2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS8512 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 5  LLLLMAVFTLLVSGESKATMGVVDQLPPSKMQEKHRKQLPSPP--------LRHSFNGLF 64
          +L+++  F++LVSG  + TM +       + QE+H   +   P        LRHSF   F
Sbjct: 7  VLMVLVFFSMLVSGYKENTMPLSVPNNGEQKQEEHEDDMNKQPQQQQQQQRLRHSFEAFF 66

Query: 65 ASKRKVPNTSDPLHNR 73
          +SKRKVPN SDPLHNR
Sbjct: 67 SSKRKVPNASDPLHNR 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0064426.11.9e-1172.22hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK201... [more]
KAE8649873.12.5e-1163.77hypothetical protein Csa_012848, partial [Cucumis sativus][more]
KDP41663.14.1e-0649.32hypothetical protein JCGZ_16070 [Jatropha curcas][more]
KAG6626451.14.6e-0547.83hypothetical protein CIPAW_15G049200 [Carya illinoinensis] >KAG6674546.1 hypothe... [more]
KAG2666233.14.6e-0547.83hypothetical protein I3760_15G047400 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
A0A0A0KZW11.6e-1667.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1[more]
A0A5D3D9C59.3e-1272.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A067L3752.0e-0649.32Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1[more]
A0A1R3HJP14.9e-0543.84Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28570 PE=4 SV=1[more]
A0A6J5W5V21.1e-0442.11Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS8512 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..72
NoneNo IPR availablePANTHERPTHR34277:SF1CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE20coord: 4..72
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 4..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0002752.1Tan0002752.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment