Tan0002491 (gene) Snake gourd v1

Overview


Name	Tan0002491
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG07: 2603212 .. 2603805 (+)
RNA-Seq Expression	Tan0002491
Synteny	Tan0002491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAGAGGACAAAATATTTACTATCACGAGAGAACTTGAACGAGAGGACAAATGTAACAAAGCATGTGAAAACGGGCCTTCCGTGCAAATATCGCAAGACTCGAGGCATGTCTACAAGTTACCCACCCCAAAAAACTTGCTGTTTTACTGGTTTGTCCTCTGTTTTTTGCTACATTTCCCATCAATCTTTATATATTAGCTGTTTCTTCTTCATTGGTTGCTAAAGCATTTATTACAGCGCTCTCTCTGACATCAATGGCTACCGCCGCCGCCGGTTACTTTGTTGTCTGGTCTCTGGCTGTCTTCTTTGCCTTATCTCCGTCGGCCGTCGGCGCCAGCATTCATTCTTCTTCAATCTCAGCTTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGACTTCGTTTTTCCCTTCTCCGATTGATGAGCGATCATCTCCCATTTCTGCAGCTCCTCGGTCGCCGGCGCCGGGCTCCGGCGAGTTCATGGGGAAGAGTGGGTCCAGCTCTGTGAAGCTCAATTATGGCTTTTCAGTTTTTTTTCTGAGTATTTGTACTTTTTTTAGTTTAAGATTGTTTCTTAATGTTTGA

mRNA sequence

GCAAGAGGACAAAATATTTACTATCACGAGAGAACTTGAACGAGAGGACAAATGTAACAAAGCATGTGAAAACGGGCCTTCCGTGCAAATATCGCAAGACTCGAGGCATGTCTACAAGTTACCCACCCCAAAAAACTTGCTGTTTTACTGCGCTCTCTCTGACATCAATGGCTACCGCCGCCGCCGGTTACTTTGTTGTCTGGTCTCTGGCTGTCTTCTTTGCCTTATCTCCGTCGGCCGTCGGCGCCAGCATTCATTCTTCTTCAATCTCAGCTTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGACTTCGTTTTTCCCTTCTCCGATTGATGAGCGATCATCTCCCATTTCTGCAGCTCCTCGGTCGCCGGCGCCGGGCTCCGGCGAGTTCATGGGGAAGAGTGGGTCCAGCTCTGTGAAGCTCAATTATGGCTTTTCAGTTTTTTTTCTGAGTATTTGTACTTTTTTTAGTTTAAGATTGTTTCTTAATGTTTGA

Coding sequence (CDS)

ATGTCTACAAGTTACCCACCCCAAAAAACTTGCTGTTTTACTGCGCTCTCTCTGACATCAATGGCTACCGCCGCCGCCGGTTACTTTGTTGTCTGGTCTCTGGCTGTCTTCTTTGCCTTATCTCCGTCGGCCGTCGGCGCCAGCATTCATTCTTCTTCAATCTCAGCTTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGACTTCGTTTTTCCCTTCTCCGATTGATGAGCGATCATCTCCCATTTCTGCAGCTCCTCGGTCGCCGGCGCCGGGCTCCGGCGAGTTCATGGGGAAGAGTGGGTCCAGCTCTGTGAAGCTCAATTATGGCTTTTCAGTTTTTTTTCTGAGTATTTGTACTTTTTTTAGTTTAAGATTGTTTCTTAATGTTTGA

Protein sequence

MSTSYPPQKTCCFTALSLTSMATAAAGYFVVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSPIDERSSPISAAPRSPAPGSGEFMGKSGSSSVKLNYGFSVFFLSICTFFSLRLFLNV

Homology

[Close]

BLAST of Tan0002491 vs. NCBI nr
Match: XP_022934640.1 (uncharacterized protein LOC111441775 [Cucurbita moschata])

HSP 1 Score: 117.9 bits (294), Expect = 6.8e-23
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 21  MATAAAGYF-VVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSPIDE 80
           MATAAA +F V  SLA FFA+SP+AV      S+ISASP V PHR SQNM+SFFPSP+D 
Sbjct: 1   MATAAAAFFCVALSLAAFFAVSPAAV------SAISASPPVPPHRASQNMSSFFPSPVDG 60

Query: 81  RSSPISAAPR-SPAPGSGEFMGK-SGSSSVKLNYGFSVFFLSICTFFSLRLFLNV 133
           RSSPISAAP  + A  SGEF+GK SGS+SVKLN+G S F LSIC+ FSLRLFLNV
Sbjct: 61  RSSPISAAPAPATALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFSLRLFLNV 109

[Close]

BLAST of Tan0002491 vs. NCBI nr
Match: XP_022983589.1 (uncharacterized protein LOC111482150 [Cucurbita maxima])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 76/119 (63.87%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 16  LSLTSMATAAAGYF-VVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFP 75
           ++  + A AAA +F V  SLA  FALSPSAV      S+ISASP V PHR SQNM+SFFP
Sbjct: 1   MATAAAAAAAASFFCVALSLATLFALSPSAV------SAISASPPVPPHRASQNMSSFFP 60

Query: 76  SPIDERSSPISAAPRSPAPGSGEFMGK-SGSSSVKLNYGFSVFFLSICTFFSLRLFLNV 133
           SP+D RSSPISAA   PA  SGEF+GK SGS+SVKLN+G S F LSIC+ F LRL LNV
Sbjct: 61  SPVDGRSSPISAA---PALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 110

[Close]

BLAST of Tan0002491 vs. NCBI nr
Match: XP_021642153.1 (uncharacterized protein LOC110636664 [Hevea brasiliensis])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 17  SLTSMATAAAGYFVVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSP 76
           S +S A AAA   +V   +   ALS   +        I+ASPAV P+ T+ N++SFFP+P
Sbjct: 11  SSSSSAAAAAAVSLVILFSNLLALSSEHM--------IAASPAVLPYVTAPNISSFFPTP 70

Query: 77  IDERSSPISAA--PRS----PAPGSGEFMGKSGSSSVKLNYGFSVFFLSICTFFSLR 128
            ++   P+S+A  PRS    P P SGEF+GKS SSS KLN   S+F + IC  F +R
Sbjct: 71  TNDTQWPLSSADPPRSEALEPVPNSGEFIGKSSSSSPKLNGHISLFGVGICIIFVIR 119

[Close]

BLAST of Tan0002491 vs. NCBI nr
Match: KAE8021266.1 (hypothetical protein FH972_007173 [Carpinus fangiana])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 21  MATAAAGYFVVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSPIDER 80
           MAT+   +    S+A+FFA+      +S    +ISASPAV+P+ TS NM+SFFPSP D+R
Sbjct: 1   MATSTK-FCAALSMAIFFAILHGR--SSTCEPTISASPAVTPYITSPNMSSFFPSPSDQR 60

Query: 81  SSPISAAPRS----PAPGSGEFMGKSGSSSVKLNYGFSV 116
               +A P S    P P SGEF+GKS S+SV+   G ++
Sbjct: 61  PPSSAAPPNSEAFAPVPSSGEFVGKSSSNSVRFRSGITI 96

[Close]

BLAST of Tan0002491 vs. NCBI nr
Match: XP_015570786.1 (uncharacterized protein LOC107260786 [Ricinus communis])

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-05
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 33  SLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSPIDE-RSSPISAAPRSP 92
           S A+FF    S V A       SASP VSP+ T+ NM+SFFPSP +E  + P  A   +P
Sbjct: 14  STAIFF----SDVLAVDSKPVTSASPGVSPYVTAPNMSSFFPSPTNEWLTDPPKAEALAP 73

Query: 93  APGSGEFMGKSGSSSVKLNYGFSVFFLSICTFFSLRL 129
            P SGEF+GKS SSSVKL+Y +       C  F++RL
Sbjct: 74  IPSSGEFIGKSSSSSVKLSYHY--LTTGSCIIFAIRL 104

[Close]

BLAST of Tan0002491 vs. ExPASy TrEMBL
Match: A0A6J1F8A3 (uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC111441775 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.3e-23
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 21  MATAAAGYF-VVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSPIDE 80
           MATAAA +F V  SLA FFA+SP+AV      S+ISASP V PHR SQNM+SFFPSP+D 
Sbjct: 1   MATAAAAFFCVALSLAAFFAVSPAAV------SAISASPPVPPHRASQNMSSFFPSPVDG 60

Query: 81  RSSPISAAPR-SPAPGSGEFMGK-SGSSSVKLNYGFSVFFLSICTFFSLRLFLNV 133
           RSSPISAAP  + A  SGEF+GK SGS+SVKLN+G S F LSIC+ FSLRLFLNV
Sbjct: 61  RSSPISAAPAPATALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFSLRLFLNV 109

[Close]

BLAST of Tan0002491 vs. ExPASy TrEMBL
Match: A0A6J1J7U9 (uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 76/119 (63.87%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 16  LSLTSMATAAAGYF-VVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFP 75
           ++  + A AAA +F V  SLA  FALSPSAV      S+ISASP V PHR SQNM+SFFP
Sbjct: 1   MATAAAAAAAASFFCVALSLATLFALSPSAV------SAISASPPVPPHRASQNMSSFFP 60

Query: 76  SPIDERSSPISAAPRSPAPGSGEFMGK-SGSSSVKLNYGFSVFFLSICTFFSLRLFLNV 133
           SP+D RSSPISAA   PA  SGEF+GK SGS+SVKLN+G S F LSIC+ F LRL LNV
Sbjct: 61  SPVDGRSSPISAA---PALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 110

[Close]

BLAST of Tan0002491 vs. ExPASy TrEMBL
Match: A0A5N6QUU6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.7e-07
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 21  MATAAAGYFVVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSPIDER 80
           MAT+   +    S+A+FFA+      +S    +ISASPAV+P+ TS NM+SFFPSP D+R
Sbjct: 1   MATSTK-FCAALSMAIFFAILHGR--SSTCEPTISASPAVTPYITSPNMSSFFPSPSDQR 60

Query: 81  SSPISAAPRS----PAPGSGEFMGKSGSSSVKLNYGFSV 116
               +A P S    P P SGEF+GKS S+SV+   G ++
Sbjct: 61  PPSSAAPPNSEAFAPVPSSGEFVGKSSSNSVRFRSGITI 96

[Close]

BLAST of Tan0002491 vs. ExPASy TrEMBL
Match: A0A2N9I0C8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46014 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 18  LTSMATAAAGYFVVWSLAVFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSPI 77
           + ++  + A   +V   A+ +A S      S    +ISASPAVSP+ T+ NM+SFF SP 
Sbjct: 1   MATITKSCAALSIVICFAILYAPS------STSEPTISASPAVSPYVTAPNMSSFFNSPS 60

Query: 78  DERSSPISAAPRS----PAPGSGEFMGKSGSSSVKLNYGFSVFFLSICTFFSLRL 129
            +R    +AAP S    P P SGEF+G+S S+S + + G ++F + +   F  RL
Sbjct: 61  VQRPLSSAAAPHSEAITPVPRSGEFVGRSSSNSARSDLGITIFGVGLVCLFVTRL 109

[Close]

BLAST of Tan0002491 vs. ExPASy TrEMBL
Match: A0A445CTM7 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g029510 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 36  VFFALSPSAVGASIHSSSISASPAVSPHRTSQNMTSFFPSPIDERSSPISAAPRSPAPGS 95
           +F  L+ S   +S    +I ASP + P+ T+ +++SFFP+P D +      AP SP P S
Sbjct: 10  LFVLLANSEALSSTREPTIPASPGILPYVTAPDISSFFPAPSDNQPMSSGDAP-SPMPSS 69

Query: 96  GEFMGKSGSSSVKLNYGFSVFFLSICTFFSLRLFLN 132
           GEF G+  SSS +LNY  ++  + +C+FF +  + N
Sbjct: 70  GEFHGRMTSSSARLNYANAIVVMMLCSFFIIIKYHN 104

[Close]

BLAST of Tan0002491 vs. TAIR 10
Match: AT1G12845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.8e-05
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 52  SSISASPAVSPHRTSQNMTSFFPS-----PIDERSSPISAAPRSPAPGSGEFMGKSGSSS 111
           S+I ASPAV P+  + +M+SFFPS     PI+  +SP+   P +P P SG+  GK    S
Sbjct: 28  STILASPAVLPYINAPDMSSFFPSPTKDWPIETATSPV-PEPEAPGPSSGQLNGKISGRS 87

Query: 112 VKLNYGFSVF--FLSICTF 124
           ++L+   S+    + ICTF
Sbjct: 88  MRLHPDISLVLAIVGICTF 105

The following BLAST results are available for this feature:

BLAST of Tan0002491 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002491 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934640.1	6.8e-23	68.70	uncharacterized protein LOC111441775 [Cucurbita moschata]	[more]
XP_022983589.1	1.4e-20	63.87	uncharacterized protein LOC111482150 [Cucurbita maxima]	[more]
XP_021642153.1	1.5e-06	43.59	uncharacterized protein LOC110636664 [Hevea brasiliensis]	[more]
KAE8021266.1	2.0e-06	45.45	hypothetical protein FH972_007173 [Carpinus fangiana]	[more]
XP_015570786.1	3.8e-05	47.42	uncharacterized protein LOC107260786 [Ricinus communis]	[more]

BLAST of Tan0002491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8A3	3.3e-23	68.70	uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1J7U9	6.9e-21	63.87	uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150...	[more]
A0A5N6QUU6	9.7e-07	45.45	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1	[more]
A0A2N9I0C8	1.5e-04	37.39	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46014 PE=4 SV=1	[more]
A0A445CTM7	2.0e-04	37.50	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g029510 PE=4 SV=1	[more]

BLAST of Tan0002491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12845.1	6.8e-05	40.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002491.1	Tan0002491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane