Tan0002411 (gene) Snake gourd v1

Overview


Name	Tan0002411
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	(thale cress) hypothetical protein
Location	LG06: 3937475 .. 3938083 (+)
RNA-Seq Expression	Tan0002411
Synteny	Tan0002411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGCCTCAATTTCTTAAATAAAAAAAACTTCCACGTTTCTCCAATTCCTTTTTCCCCAATTATATATAAAAACCCTTCTTCGATTCTACTTCCACTTCATTCCATTTGCTTCAATTTCTCCACGATGGAGATTGGCCATTTCGAAGGAATGCTAGCGACTGCGGCCGTGTTCGTTCTTGTGCAGATTCTGGTTTATTTAATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACGCGAAGAGGTCTCTCAGTTTCAGACAGGTTCGATCTCTGAGTATTCGTCGGATTCTGGCTGCTCTCTCCGATTTTCCCTCCGGCGGCGAGTTGTCTCCTTCTCCAAGTGAAAATCGGTCGCCGTTTCTGATCCGCGGAGAATGTGCAATGGTGTCCGATGAAGGCAGTTCTTAAATGAAGCTGCTGCTGGAATTCTTTTGTTCCGTCATTTGTGTTTCATTTTTTCTATTTTGTGAATAATTATGCATATTTGTTAAATTATTAAATTATGTTAAATATTTGAAGTTACAGACTTACATGCTAATATTTGAAGCTACGGACTTACATGCATGTTTGATAATTACGAATTTACGAGTCGACAATCCATTAGCT

mRNA sequence

TAAAGCCTCAATTTCTTAAATAAAAAAAACTTCCACGTTTCTCCAATTCCTTTTTCCCCAATTATATATAAAAACCCTTCTTCGATTCTACTTCCACTTCATTCCATTTGCTTCAATTTCTCCACGATGGAGATTGGCCATTTCGAAGGAATGCTAGCGACTGCGGCCGTGTTCGTTCTTGTGCAGATTCTGGTTTATTTAATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACGCGAAGAGGTCTCTCAGTTTCAGACAGGTTCGATCTCTGAGTATTCGTCGGATTCTGGCTGCTCTCTCCGATTTTCCCTCCGGCGGCGAGTTGTCTCCTTCTCCAAGTGAAAATCGGTCGCCGTTTCTGATCCGCGGAGAATGTGCAATGGTGTCCGATGAAGGCAGTTCTTAAATGAAGCTGCTGCTGGAATTCTTTTGTTCCGTCATTTGTGTTTCATTTTTTCTATTTTGTGAATAATTATGCATATTTGTTAAATTATTAAATTATGTTAAATATTTGAAGTTACAGACTTACATGCTAATATTTGAAGCTACGGACTTACATGCATGTTTGATAATTACGAATTTACGAGTCGACAATCCATTAGCT

Coding sequence (CDS)

ATGGAGATTGGCCATTTCGAAGGAATGCTAGCGACTGCGGCCGTGTTCGTTCTTGTGCAGATTCTGGTTTATTTAATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACGCGAAGAGGTCTCTCAGTTTCAGACAGGTTCGATCTCTGAGTATTCGTCGGATTCTGGCTGCTCTCTCCGATTTTCCCTCCGGCGGCGAGTTGTCTCCTTCTCCAAGTGAAAATCGGTCGCCGTTTCTGATCCGCGGAGAATGTGCAATGGTGTCCGATGAAGGCAGTTCTTAA

Protein sequence

MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALSDFPSGGELSPSPSENRSPFLIRGECAMVSDEGSS

Homology

[Close]

BLAST of Tan0002411 vs. NCBI nr
Match: XP_022147203.1 (uncharacterized protein LOC111016209 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALS 60
          MEI   EG++ATAAVF LVQILVYLILSKSSDVFSKN KRSLSFR VRSLSIRRILAALS
Sbjct: 4  MEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAALS 63

Query: 61 DFPSGGELSPSPSENRSPFLIRGECAMVSDEGSS 95
          D PSGGE SP P+E+ SPF I GECA +  +GSS
Sbjct: 64 DVPSGGEPSP-PNESPSPFSIGGECAAMFRDGSS 96

[Close]

BLAST of Tan0002411 vs. NCBI nr
Match: XP_022954080.1 (uncharacterized protein LOC111456452 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 7.0e-22
Identity = 68/94 (72.34%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALS 60
          MEI H EGM  TAAVF+LVQILVYLILSKSS VFSKN KRSLSFRQVRSLSIRRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALS 62

Query: 61 DFPSGGELSPSPSENRSPFLIRGECAMVSDEGSS 95
          DFPSG   +  P E+      RGEC  + DEGSS
Sbjct: 63 DFPSG---TGDPDES------RGECGTMFDEGSS 87

[Close]

BLAST of Tan0002411 vs. NCBI nr
Match: XP_023548863.1 (uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 67/94 (71.28%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALS 60
          MEI H EGM  TAAVF+LVQILVYLILSKSS VFSKN KRSLSFRQVRSL+IRRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALS 62

Query: 61 DFPSGGELSPSPSENRSPFLIRGECAMVSDEGSS 95
          DFPSG   +  P E+      RGEC  + DEGSS
Sbjct: 63 DFPSG---TGDPDES------RGECGTMFDEGSS 87

[Close]

BLAST of Tan0002411 vs. NCBI nr
Match: KAG6575656.1 (hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014206.1 hypothetical protein SDJN02_24381, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALS 60
          MEI H EGM  TAAVF+LVQILVYLILSKSS VFSKN KRSLSFRQVRSL+IRRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALS 62

Query: 61 DFPSGGELSPSPSENRSPFLIRGECAMVSDEGSS 95
          DFPSG      P E+      RGEC  + DEGSS
Sbjct: 63 DFPSG---DGDPDES------RGECGTMFDEGSS 87

[Close]

BLAST of Tan0002411 vs. NCBI nr
Match: XP_022991948.1 (uncharacterized protein LOC111488440 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1  MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALS 60
          MEI H EGM  TAAVF+LVQILVYLILSKSS VFSKN KRSLSFRQVRSLSIRRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALS 62

Query: 61 DFPSGGELSPSPSENR 77
          DFPSG   +  P E+R
Sbjct: 63 DFPSG---AGDPDESR 75

[Close]

BLAST of Tan0002411 vs. ExPASy TrEMBL
Match: A0A6J1D0M4 (uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016209 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.6e-26
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALS 60
          MEI   EG++ATAAVF LVQILVYLILSKSSDVFSKN KRSLSFR VRSLSIRRILAALS
Sbjct: 4  MEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAALS 63

Query: 61 DFPSGGELSPSPSENRSPFLIRGECAMVSDEGSS 95
          D PSGGE SP P+E+ SPF I GECA +  +GSS
Sbjct: 64 DVPSGGEPSP-PNESPSPFSIGGECAAMFRDGSS 96

[Close]

BLAST of Tan0002411 vs. ExPASy TrEMBL
Match: A0A6J1GRF7 (uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC111456452 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.4e-22
Identity = 68/94 (72.34%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALS 60
          MEI H EGM  TAAVF+LVQILVYLILSKSS VFSKN KRSLSFRQVRSLSIRRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALS 62

Query: 61 DFPSGGELSPSPSENRSPFLIRGECAMVSDEGSS 95
          DFPSG   +  P E+      RGEC  + DEGSS
Sbjct: 63 DFPSG---TGDPDES------RGECGTMFDEGSS 87

[Close]

BLAST of Tan0002411 vs. ExPASy TrEMBL
Match: A0A6J1JXQ0 (uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1  MEIGHFEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALS 60
          MEI H EGM  TAAVF+LVQILVYLILSKSS VFSKN KRSLSFRQVRSLSIRRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALS 62

Query: 61 DFPSGGELSPSPSENR 77
          DFPSG   +  P E+R
Sbjct: 63 DFPSG---AGDPDESR 75

[Close]

BLAST of Tan0002411 vs. ExPASy TrEMBL
Match: V7BSW8 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G042200g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.4e-14
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 9  MLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALSDFPSGGEL 68
          ML    VFVLVQ LVYLILS SS++FSKN KRS SFR  RS+SIRR+LA +SDFPS GE 
Sbjct: 8  MLIKVGVFVLVQALVYLILSNSSNIFSKNIKRSNSFRPARSVSIRRMLALISDFPSEGEP 67

Query: 69 SPSPSENRSPFL 81
          SPSP   +SP L
Sbjct: 68 SPSPKTPKSPSL 79

[Close]

BLAST of Tan0002411 vs. ExPASy TrEMBL
Match: A0A6P4BPM5 (uncharacterized protein LOC107434156 OS=Ziziphus jujuba OX=326968 GN=LOC107434156 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.4e-14
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 6  FEGMLATAAVFVLVQILVYLILSKSSDVFSKNAKRSLSFRQVRSLSIRRILAALSDFPSG 65
          F  ML    +F LVQ LVYLILSKSS +FSK+ KRS SF+  RS+S+RR LAALSD P+G
Sbjct: 7  FSDMLIKVGLFFLVQALVYLILSKSSSIFSKSTKRSHSFKPARSVSVRRFLAALSDMPAG 66

Query: 66 GELSPSPSEN 76
          GELSPSP E+
Sbjct: 67 GELSPSPKEH 76

[Close]

BLAST of Tan0002411 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 9.5e-17
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 4  GHFEGMLATAAVFVLVQILVYLILSKSSDVF--SKNAKRSLSFRQVRSLSIRRILAALSD 63
          G FEGML   ++F L+Q LVYLILSKSS VF  SK  KR+ SFR  RS+SIRRILA L D
Sbjct: 3  GSFEGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQD 62

Query: 64 FPSGGELSPS 72
           P+GGE+SPS
Sbjct: 63 MPAGGEMSPS 72

[Close]

BLAST of Tan0002411 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-12
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 9  MLATAAVFVLVQILVYLILSKSSDVF--SKNAKRSLSFRQVRSLSIRRILAALSDFPSGG 68
          ML   A+F LVQ LVYLIL KSS VF  S + KR+ SFR +RS+SIRRILAAL D P+G 
Sbjct: 8  MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPAGD 67

Query: 69 ELSPSPSENRSPFLIRGECAMVSDEGSS 95
          ++  SPS N S    + E A  +   SS
Sbjct: 68 DM--SPSSNGSSSSSQDEAATTTTTSSS 93

[Close]

BLAST of Tan0002411 vs. TAIR 10
Match: AT1G55207.1 (unknown protein; LOCATED IN: endomembrane system. )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 9  MLATAAVFVLVQILVYLILSKSSDVFS-----KNAKRSLSFRQVRSLSIRRILAALSD 62
          +L  AA+FV++Q L +LI+S SSD+FS     K  KRS  F+  RS+S   + A +SD
Sbjct: 7  ILTNAAIFVIIQALAFLIISTSSDIFSSKIKMKTKKRSFGFKLSRSIS--HLFALISD 62

The following BLAST results are available for this feature:

BLAST of Tan0002411 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002411 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147203.1	1.4e-25	77.66	uncharacterized protein LOC111016209 [Momordica charantia]	[more]
XP_022954080.1	7.0e-22	72.34	uncharacterized protein LOC111456452 [Cucurbita moschata]	[more]
XP_023548863.1	1.6e-21	71.28	uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo]	[more]
KAG6575656.1	2.0e-21	71.28	hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022991948.1	4.3e-19	78.95	uncharacterized protein LOC111488440 [Cucurbita maxima]	[more]

BLAST of Tan0002411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0M4	6.6e-26	77.66	uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1GRF7	3.4e-22	72.34	uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]
A0A6J1JXQ0	2.1e-19	78.95	uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440...	[more]
V7BSW8	3.4e-14	68.06	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G042200g PE=4 ...	[more]
A0A6P4BPM5	4.4e-14	65.71	uncharacterized protein LOC107434156 OS=Ziziphus jujuba OX=326968 GN=LOC10743415...	[more]

BLAST of Tan0002411 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	9.5e-17	65.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	2.4e-12	53.41	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55207.1	4.1e-04	44.83	unknown protein; LOCATED IN: endomembrane system.	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 7..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002411.1	Tan0002411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane