Tan0002207 (gene) Snake gourd v1

Overview


Name	Tan0002207
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNase H domain-containing protein
Location	LG04: 14961924 .. 14966742 (+)
RNA-Seq Expression	Tan0002207
Synteny	Tan0002207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTTCACCGGCAGATTCTTCGAGAACAGGGAATGGAATTCAATCGGAACCGGCAGCGGTGAAGAGATCTGTGATTTCGCAGATGCTTTCTCCGATCACCATCAATTCATCCATGGACGTTTCACCATCAATGCAAATCAGCGAAAAATCAGGGGAGAAAGAGGAGCTCGTTACGAAACGTACGAACATTAAATATGCTAAGAAGCTCAATTTTGAGGGAGCTGAAATGATTGATAGAGGGTTCTCGAAAAAGCTGGAAGATAAGGGTTACATGGTTGGCAATGGGTTAGACCTTGATGGGCTCTTAATTTGCAATGTTGCGGTTAATGGAAAGGAGTTGGGTCAGTCTCTTCCAGATTCACAAAATGTGAAGGCCCAATCTAAAACTAAAGGGGTCGAGGAAAGAAATCAAACGGGGTTGGTCCATGCGGTTATTGGGCTGGCCGAAAATAAACTTGAAGGGGGCCCAGAACCTGCTTCATATGCAGGCAAGGAAGATGATTTGAAGCCCACTTCTTTCTGCAAACAAGTCCAAATACCGGCAACTCCTACACCTCCGCCAGGTAAGTGGAAAAGATTTATTCGTCCATCTTCTCCATTACCGAGCACGACTGATGTTTGTGTTAAGGGGGAAAAGCGGAAGTCTGTTTGTATTTCTGCAAGTTCCAATAAGAGGTCATTACTCCAATCCAGGTCATACGATGGTGAGGATGGAAAAAACTTATCTTTTGAGGGGGCGGTGGTTGCTGAGCAACCCCGCCAGCAATCATGAAAACTCTTTGTTGGAATGTCCGTGGGTTGGGGAACCCTAGGGCATTTCGTGTTGTTTGCGATGAATTAACTCGTTATACTCCCCATTTATGTTTTTTTGTTGGAAACTAAATGTAATCGCAATGTTCTGAATAAGTTGAAAAGCACTTTATGTTATTATGGTTGTTTTATTGTTGATAGAACAGGTCGGAGTGGGGGTCTCTGTCTGCTCTGGTCAGAGCAAATTGTAGTTTCTATTCTATCTTTTTCCCCTCATCACATTGATGCATCCATAGGATGGAATAGTAAGAGTTGGAGATTCACCGACTTTTATGGTCAACCTGACTAATCTCTTCGGAATCAGTCATGGAACTATTACGCATAATTGGTAACAATGACCCATCGCCTTGGGTTGTAGGGAGAGATGTTAATGAAATTCTTTGGGATGTCGAGAAAAGTAGAGGTGGGAACAGACAACAAGGACTGATTCAGGAGTTTCGACAAGCTATAAATGATTGATGCCTCCAAGACTTGGGTTTTCGCGGTGGTAAATTTACCTGGTGCAACAGGAGGGAGCAAAATGATCAGGTTAGTCTTCGTCTTGATCGATTTTTGGCTAACAAAGAGTTTTGCCTTTTGTTCCAGAATTGTGTTGTAAATAATCTTGACTGGGCAAAATCTGACCACCGTCTGATCCTACTAAATCTGGAAGCTCCCTATCGAAAGGTTGGAGATCTCGAAAACCGTTTCGATTCAAGAAATTTTGGGTAAGGAACCCAGAGTGCAAGAGTTTAATTGAAAAAATAAGTGAGTCAAATCAGTTGAATCAGGTGGAACCAGGGTTGCAACGATTGTTGAATTTAACAGCTAGAGTTTTGGGTCCTTGGGGCAAGAAGCAGAATGGTAGCTTAAAATCCGATATACATACATTGCGGTCTAAGTTAAAGGAAGCCTATGCACAACCATTGCCTTTAAATTTTGCTCTAATCAGATTTATAGAAAAAAAACTTGAAAGCAGATTGTTGGATGAGGAGATTTACTGGAAACAAAGATCACGAGAAAACTGGCTAAAGTAAGGAGACAGAAACACCAGATGGTTTCGCCTGAGGGCCTCAAAAAGAAAGAAAAGAAACACAATCAAGCGGATTTTGGATGGGTCGGGACAATTGCAAGAGAACCCGACTGTGGTGTCCAAGGTGTTTCTGGATTACTTCACGGGTGTCTTTGCTTCCTCCAACCCAACGACGGAGAACATTTCTAAGGTAACTAATGCAATCCCTCGGAAACTGTCAAATAATATGATTAATATTCTCTTTCAGGATTTCACTGAGGATGAAATTGTGAGGGCGGTAAAAGGATTCCATCCGACTAAGTCACCTGGTCCAGATGGGTTCTCAGCAGTTTTTTACCAGAAATACTAGGACGTAATTGGTCCTCAGACAGTGGACAGTTGTTTGAAGATTCTTAAACAGAGAGTCTCGTCGGCATGTTGGAACAAAACTACTATTGTTCTCATTCCTAAGGTGAAGGATCCTAAGGAGGTGACGGACAATCGTCTGATTAGCCTTTGTAACGTTTGTTATAAAATAGTGACAAAGGTCATCCCGAACCGAATGAAACAAATTCTGGGTGATATAATCTCTGAGGAGCAATCTGCTTTTGTCCCAGGTAGGAACATCACAGACGATCTTATTATTGCACATGAAACCTTAGGCTGGATGAACTAGATGAAAAAGGGCTCCGGGGGCTTTGCTGCAATCAAGCTGGATATGAACAAGGCTTACGATAGAGTGGAATGGGCATTCCTCCAACAAGTATTATTGCAATTGAGGTTCCCTACAAGATGGGTGGAATTGATCATGGATTGTATTTCGACGGTGTTCTTTTCTATTTCATTAAATGGGAAAGACATTGGGACTGTTAAACCGTCAAGAGGGATTCGACAGGGGGATTCGTTATCTCCATATCTGTTTTTGTTGTGTGTCGAAGGCTTATCAGCGTTACTTTCATTAGAATCAAGGGTTGGAAGACTATCCGAGGTGGCAGGTTCAAGACAAAATCCTAAGGTAACTCATTTGTTCTTTTGCGGATGATAGTCTTCTTTTCTTTAGAGCCAATGTCAATGAGTTTGGCCTACTAAAGGCCATTCTCAGTACCTATGAGTCAACATCAGGTCAGTCCATCAATATGAGAAAGTCAGCAATGGGTTCTCCCCAAATGTAGGTCCAAAGTGCAAACAGTATCTAGGTCTTATTTTGCAAATGAATACAGTTGGCAATCTTGGGTCGTATCTGGGTATTCTTTCTTCCTTTTCAAGAACTAAATGGGCAGATTGGCGCTACTTAAAGGACAAATTTTGGCAGAAGCTACAGGGTTGGAAAAGAAGTTTGTTCTCTACAGGAGCTAAAGAGGTGATGGTAAAAAGTGTAGTTATGGCCTTGCCAACATATCCTATGAGTTGTTTTAGACTCCAAAAGAAGTTGCATCATTATTTACCAGTCAGATGGCAAAGTTTTGGTGGGGTTCCTCGACAGAGAACAGGAAAATACACTGGATGGGGTGAGAGAGATTATGTAAACGTAAGGAATTGGGAGGTCTAAATTTTCGTGATCTGATGGGGGTAAATAAAGTTATTTTAGCCAAACAGACTTTGAGAGTGTTTATGAACCCTTGCTTATTGGTGTCTAAAGTTTTGAAAGGTAGATACTTTCCCAATTCTGATCTTCTCAGTATATCATCTTCCCCTGCCTCAGGATCATATTTCTGGAAGAGTTTTGTCTGGGGCATGGATTTACGCAAGAAAGGTATGCGTCTGCAGGTTGGGAATGAGGAATCCATCAGGATTTGCAAAGACCCCTGGTTACTAAGGTTATGGTCTTTTAAGTCGATCTAGTGTCTTACTGACCCAGGGGGAGATGTATGTCTCTGAGTTCATCACACCAGATAAACATTGGGATATCAACAGGTTGGAGCATTACATTGAGAAGGAGGAGGTACAGGAAATTGTAAGGCAACCGATATCTTTATCTAGATGTGCAGATAGGTGGGTATGGCATTTTGATAAGGTGGGTCGTTATCAAGTCAAGAGTGGCTACAAGTTGTGTATGCTGAACCCCGAGAGACCATCCTCATCTCTTGAGGAGGGGGACAAGAAATGTTGGAAAGGACTATGGGGATTAAATTTACCGACGAAGGTAAAATTGTTTGTATGGCGTTCCTTTCATGGTTGCCTGCCTACGTGAGTCAACATGATAGATCTCTCTTGTAGTTGTCCTATATGTGGTCGGATGCCAGAGAAGATGAAACATATACTTTTTTGGTGCCCCAGAGCACAAGATTTGTGGAATGTCTTGATTAAGAGGGTTGAGGTTGGATTAGATAGAAGATGGTCGATACAAGATATTTGGTTGGAGTTGTTCAAGCACAATGACAGTGAACTGATGTGTGTTGGTGCAAGGGGTATCTGGAATGATCATAACAATTGGTGTTTTAGCCATCATTTGTCTCTGGTTTCTGATAGAGCGGAGTGGGTATTACATTATCTGCAGGAATTCCAATCTTCAAATATATCATCGAAGCCCAAATCCGAGAGTGGTGTCGCTAGGTCGAGTACAGTCCCTTCCTGTATTAACATTTTTGTGGATGCAGCTTGTAATGAACAGGATGGAAAGACAGGCGTGGGAGTGGCTATTTGTGTTAATGATGGGAGTTGTTTGGTGGCCATGGCCAACAAATATGATTGTTACTTAAATTCGACATGCTTCGAAGAAGTGGCTTTGTATGATGGGTTGAAATTGGCTTCCCGTCTGGATTTCTCTCAAGTTCACTTCTTTTCAGATTCGTTGTCCTTAGTAGCAATGGTGAATGGAGTCCAGGAGCCTACTACGGATATCAAAAATTATATCGAAGATATTCATTTGCTTTGGCAACATTTTAGGGTGAATCATTTGAGCCATACTAGTAGATCTTTTAATTCTTTAGCACATGTATTAGCAAGGAAGGGTTTGGGGGGTTGTACAGAGCTTTGGAATGACAATTTTCTTGATTGGATCCGAAATCTTTAA

mRNA sequence

ATGGCCACTTCACCGGCAGATTCTTCGAGAACAGGGAATGGAATTCAATCGGAACCGGCAGCGGTGAAGAGATCTGTGATTTCGCAGATGCTTTCTCCGATCACCATCAATTCATCCATGGACGTTTCACCATCAATGCAAATCAGCGAAAAATCAGGGGAGAAAGAGGAGCTCGTTACGAAACGTACGAACATTAAATATGCTAAGAAGCTCAATTTTGAGGGAGCTGAAATGATTGATAGAGGGTTCTCGAAAAAGCTGGAAGATAAGGGTTACATGGTTGGCAATGGGTTAGACCTTGATGGGCTCTTAATTTGCAATGTTGCGGTTAATGGAAAGGAGTTGGGTCAGTCTCTTCCAGATTCACAAAATGTGAAGGCCCAATCTAAAACTAAAGGGGTCGAGGAAAGAAATCAAACGGGGTTGGTCCATGCGGTTATTGGGCTGGCCGAAAATAAACTTGAAGGGGGCCCAGAACCTGCTTCATATGCAGGCAAGGAAGATGATTTGAAGCCCACTTCTTTCTGCAAACAAGTCCAAATACCGGCAACTCCTACACCTCCGCCAGCTTGTAATGAACAGGATGGAAAGACAGGCGTGGGAGTGGCTATTTGTGTTAATGATGGGAGTTGTTTGGTGGCCATGGCCAACAAATATGATTGTTACTTAAATTCGACATGCTTCGAAGAAGTGGCTTTGTATGATGGGTTGAAATTGGCTTCCCGTCTGGATTTCTCTCAAGTTCACTTCTTTTCAGATTCGTTGTCCTTAGTAGCAATGGTGAATGGAGTCCAGGAGCCTACTACGGATATCAAAAATTATATCGAAGATATTCATTTGCTTTGGCAACATTTTAGGGTGAATCATTTGAGCCATACTAGTAGATCTTTTAATTCTTTAGCACATGTATTAGCAAGGAAGGGTTTGGGGGGTTGTACAGAGCTTTGGAATGACAATTTTCTTGATTGGATCCGAAATCTTTAA

Coding sequence (CDS)

ATGGCCACTTCACCGGCAGATTCTTCGAGAACAGGGAATGGAATTCAATCGGAACCGGCAGCGGTGAAGAGATCTGTGATTTCGCAGATGCTTTCTCCGATCACCATCAATTCATCCATGGACGTTTCACCATCAATGCAAATCAGCGAAAAATCAGGGGAGAAAGAGGAGCTCGTTACGAAACGTACGAACATTAAATATGCTAAGAAGCTCAATTTTGAGGGAGCTGAAATGATTGATAGAGGGTTCTCGAAAAAGCTGGAAGATAAGGGTTACATGGTTGGCAATGGGTTAGACCTTGATGGGCTCTTAATTTGCAATGTTGCGGTTAATGGAAAGGAGTTGGGTCAGTCTCTTCCAGATTCACAAAATGTGAAGGCCCAATCTAAAACTAAAGGGGTCGAGGAAAGAAATCAAACGGGGTTGGTCCATGCGGTTATTGGGCTGGCCGAAAATAAACTTGAAGGGGGCCCAGAACCTGCTTCATATGCAGGCAAGGAAGATGATTTGAAGCCCACTTCTTTCTGCAAACAAGTCCAAATACCGGCAACTCCTACACCTCCGCCAGCTTGTAATGAACAGGATGGAAAGACAGGCGTGGGAGTGGCTATTTGTGTTAATGATGGGAGTTGTTTGGTGGCCATGGCCAACAAATATGATTGTTACTTAAATTCGACATGCTTCGAAGAAGTGGCTTTGTATGATGGGTTGAAATTGGCTTCCCGTCTGGATTTCTCTCAAGTTCACTTCTTTTCAGATTCGTTGTCCTTAGTAGCAATGGTGAATGGAGTCCAGGAGCCTACTACGGATATCAAAAATTATATCGAAGATATTCATTTGCTTTGGCAACATTTTAGGGTGAATCATTTGAGCCATACTAGTAGATCTTTTAATTCTTTAGCACATGTATTAGCAAGGAAGGGTTTGGGGGGTTGTACAGAGCTTTGGAATGACAATTTTCTTGATTGGATCCGAAATCTTTAA

Protein sequence

MATSPADSSRTGNGIQSEPAAVKRSVISQMLSPITINSSMDVSPSMQISEKSGEKEELVTKRTNIKYAKKLNFEGAEMIDRGFSKKLEDKGYMVGNGLDLDGLLICNVAVNGKELGQSLPDSQNVKAQSKTKGVEERNQTGLVHAVIGLAENKLEGGPEPASYAGKEDDLKPTSFCKQVQIPATPTPPPACNEQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGLGGCTELWNDNFLDWIRNL

Homology

[Close]

BLAST of Tan0002207 vs. NCBI nr
Match: XP_030969974.1 (uncharacterized protein LOC115990267 [Quercus lobata])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-08
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 193 EQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFS 252
           ++  K G+GV +  + G  L A+  K D   ++   E +A+   ++ A    F+ V   S
Sbjct: 30  KESNKAGIGVVVRDSQGWVLAALTEKVDGVQDAEVIEALAIRRAIRFAIETSFNCVIIES 89

Query: 253 DSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGL 310
           DSLS+V  +    EPT  I N IED+ LL +  +     HT R  N +AH LAR  +
Sbjct: 90  DSLSVVKAIQDTAEPTCHIGNIIEDVKLLSKTMKSCEFHHTKREANQVAHTLARNAI 146

[Close]

BLAST of Tan0002207 vs. NCBI nr
Match: XP_022154440.1 (uncharacterized protein LOC111021711 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-07
Identity = 45/157 (28.66%), Postives = 75/157 (47.77%), Query Frame = 0


Query: 177 KQVQIPATPTP-------PPACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCF 236
           K V   A P+P         AC   + +TG+GV +C ND G  +VAM  K D +      
Sbjct: 123 KDVNYWAPPSPDWVKINVDTACKLSNSRTGIGV-VCQNDKGEIIVAMIRKLDVFYEPLQV 182

Query: 237 EEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVN 296
           E +A+ +GL L   LD   V   SDS + + +++   +P+     +++DIH+   +F   
Sbjct: 183 ETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVWVDDIHMCAINFIDI 242

Query: 297 HLSHTSRSFNSLAHVLARKGL-GGCTELWNDNFLDWI 325
              H  RS +++ H LA   +     ++W   F +W+
Sbjct: 243 LFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL 278

[Close]

BLAST of Tan0002207 vs. NCBI nr
Match: XP_023920968.1 (uncharacterized protein LOC112032440 [Quercus suber])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-06
Identity = 36/113 (31.86%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 197 KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLS 256
           + GVGV +   +G+ + A+A K +C L +   E  AL  G+     +    V F  DSL 
Sbjct: 61  QAGVGVLVRDEEGNVIAALARKLECPLGALAMEAKALEIGVSFVEEVGLRDVVFEGDSLL 120

Query: 257 LVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGL 310
           ++  V G+ E    ++N I  +    Q FR     HT R  N+ AH+LA+  L
Sbjct: 121 VINAVQGINEAEASVRNIILGVLRNVQRFRTFDFLHTKRQGNAPAHLLAQHAL 173

[Close]

BLAST of Tan0002207 vs. NCBI nr
Match: XP_023906281.1 (uncharacterized protein LOC112018008 [Quercus suber])

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-06
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 0


Query: 182 PATPTPPP---------ACNEQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVA 241
           P  P+PPP         A +E D  + VGV I  N G  + A+   +  Y ++   E  A
Sbjct: 19  PRRPSPPPGIQKVNVDGASSEHDSFSSVGVVIRDNKGQVVAALCLPHQSYYSAELTEVFA 78

Query: 242 LYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSH 301
           L  G+ LA  L   ++ F  DSL ++  +N  +   T+  + I+ I  +   F   H  H
Sbjct: 79  LEQGVLLAQELQLPRLIFELDSLVVIQAIND-KANGTNYGHLIQGILQVCDSFESCHFKH 138

Query: 302 TSRSFNSLAHVLAR 307
            SRSFN++AH LA+
Sbjct: 139 LSRSFNTVAHELAQ 151

[Close]

BLAST of Tan0002207 vs. NCBI nr
Match: XP_042965938.1 (uncharacterized protein LOC122299618 [Carya illinoinensis])

HSP 1 Score: 63.2 bits (152), Expect = 4.9e-06
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 190  ACNEQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVH 249
            A ++++GK G+GV I   +G  LVA   + +   ++   E  AL   L++   L+F+ V 
Sbjct: 873  AVDKKEGKVGIGVVIRDEEGEVLVATGEQMNYMTDAAIAESFALRKALEVCRDLNFNNVW 932

Query: 250  FFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGL 309
            F  D+ ++V  VN   E  +   + IED+  L +  +   +S   R  N  AHVLAR  L
Sbjct: 933  FEGDAQNIVNAVNTETEDMSRYGSVIEDVKNLLKGRKKWRVSFVFREANEAAHVLARDVL 992

Query: 310  GGCTEL-WNDNFLDWIRNL 328
               +E+ W ++  D IR +
Sbjct: 993  FFQSEIVWIEDAPDCIRGI 1011

[Close]

BLAST of Tan0002207 vs. ExPASy TrEMBL
Match: A0A6J1DJL6 (uncharacterized protein LOC111021711 OS=Momordica charantia OX=3673 GN=LOC111021711 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-07
Identity = 45/157 (28.66%), Postives = 75/157 (47.77%), Query Frame = 0


Query: 177 KQVQIPATPTP-------PPACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCF 236
           K V   A P+P         AC   + +TG+GV +C ND G  +VAM  K D +      
Sbjct: 123 KDVNYWAPPSPDWVKINVDTACKLSNSRTGIGV-VCQNDKGEIIVAMIRKLDVFYEPLQV 182

Query: 237 EEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVN 296
           E +A+ +GL L   LD   V   SDS + + +++   +P+     +++DIH+   +F   
Sbjct: 183 ETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVWVDDIHMCAINFIDI 242

Query: 297 HLSHTSRSFNSLAHVLARKGL-GGCTELWNDNFLDWI 325
              H  RS +++ H LA   +     ++W   F +W+
Sbjct: 243 LFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL 278

[Close]

BLAST of Tan0002207 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-06
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 190 ACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQV 249
           AC +   +T +G+ +C N+ G  L A + + + Y +    E +AL +GL+LA  L+  QV
Sbjct: 40  ACKKHQFRTAIGI-VCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLRLADHLNIQQV 99

Query: 250 HFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKG 309
            F SDSL L+ ++            ++EDI +L ++F   +  H  RS N  A  +A   
Sbjct: 100 QFESDSLQLINLLTEDPISWCGSNVWLEDIRVLARNFIDFNFLHVCRSSNKAARRVASFA 159

Query: 310 LG 311
           +G
Sbjct: 160 VG 160

[Close]

BLAST of Tan0002207 vs. ExPASy TrEMBL
Match: A0A7N2KSS6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-05
Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 197 KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLS 256
           + G+GV I  + G  + A++ K    L +   E  AL +G++ A  +    V F SDSL+
Sbjct: 295 QVGIGVVIRDSGGVVVAALSKKMALPLGALETEAKALEEGIQFACDVGVRDVIFESDSLN 354

Query: 257 LVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLAR 307
           +   V G+ EP + ++N I  I    Q FR    +HT R  N  AH+LA+
Sbjct: 355 ICNSVQGLSEPPSSVQNIIAGILRQVQSFRTFEFTHTRRQGNVPAHILAQ 404

[Close]

BLAST of Tan0002207 vs. ExPASy TrEMBL
Match: A0A5C7IST2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-05
Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 197 KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLS 256
           K  VG+ I  + G  L + A  ++   ++   E   +Y+GL LA+      +   SDSL+
Sbjct: 259 KFSVGIVIRDSSGRILKSAALVFNGRTSTDIAEAKVIYEGLLLATSSGLQPLSIESDSLN 318

Query: 257 LVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGLG 311
           +V + NG      D+ N I DI  L    R   +S+  RS N +AH +AR+ +G
Sbjct: 319 VVRLCNGEISTRNDVFNVICDIQFLLSRERKTSISYIPRSCNRVAHEVARRAIG 372

[Close]

BLAST of Tan0002207 vs. ExPASy TrEMBL
Match: A0A1J6L6J0 (RNase H domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_31321 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.7e-05
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 197 KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLS 256
           K  +G+     +G  L A  +       +   E  A+   ++LA +  +  +H  SDSL+
Sbjct: 32  KASIGMVALKANGDVLYAYGSPIPFVGKAIMAEAWAIRKAIQLAVKYGWKNIHILSDSLT 91

Query: 257 LVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLAR 307
           +V M+NG + P+ ++    EDI  L QH       + SR FN+ +H LA+
Sbjct: 92  MVQMLNGSRGPSWEVNTLCEDIWALQQHLSDVSFKYLSRRFNTCSHRLAK 141

The following BLAST results are available for this feature:

BLAST of Tan0002207 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002207 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030969974.1	1.8e-08	33.33	uncharacterized protein LOC115990267 [Quercus lobata]	[more]
XP_022154440.1	5.8e-07	28.66	uncharacterized protein LOC111021711 [Momordica charantia]	[more]
XP_023920968.1	2.2e-06	31.86	uncharacterized protein LOC112032440 [Quercus suber]	[more]
XP_023906281.1	3.8e-06	32.09	uncharacterized protein LOC112018008 [Quercus suber]	[more]
XP_042965938.1	4.9e-06	30.94	uncharacterized protein LOC122299618 [Carya illinoinensis]	[more]

BLAST of Tan0002207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJL6	2.8e-07	28.66	uncharacterized protein LOC111021711 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1CNR4	7.0e-06	31.15	uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A7N2KSS6	1.5e-05	33.64	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5C7IST2	5.9e-05	31.58	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 ...	[more]
A0A1J6L6J0	7.7e-05	29.09	RNase H domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_31321...	[more]

BLAST of Tan0002207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 190..307 e-value: 2.9E-20 score: 72.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 189..310 e-value: 1.8E-13 score: 52.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR47723:SF1	OS05G0353850 PROTEIN	coord: 191..320
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 191..320
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 191..306 e-value: 1.16051E-12 score: 61.9464
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 190..311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002207.1	Tan0002207.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity