Tan0002195 (gene) Snake gourd v1

Overview


Name	Tan0002195
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG07: 41374819 .. 41375605 (+)
RNA-Seq Expression	Tan0002195
Synteny	Tan0002195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGTTCTCTCTGTACAAAGTTGACTTTTGAGTTTGGCTGAAGGAAGCTCTGAAAAGACAGAGGCATCCATTAAATTAGTCTTCGTTGAACCTCTTCTCTATCAAATTCATCTTCTTCCAATCAAACCACATACAGAAAGAACAAAAAAAAAAAAAAAAAAAGAAGAAGAAAATGAATCAGAATTTGAGCTCTCTCCTAATAGGGCTGGTCGGCGCAGCCATCACTTTGTCGGCTTATTCTCAGACTTTGATTTCTCCAACTGAGTGCATCACAGTCGGCCTTCTCGTTCTCATTTTTGGTCTTCTTGTTAATGAAGGTCTCATCTCTCTTTAGCTTCTTAATTCTCATTTTTCTCTTTAATCATTTGGGTAATTTCTCTGTAATTTCTTTGGAATATCACTTTATTTTTCTATTGAACTTTTGAATTTGTCTCTATTTCATTACTTTGGAATTATGAGATCCATAATCATTTTGGTCAATTTTGCAAATCTAAAATTTATAAGACGGAGATGGTCATGGTTCTAGTCAGTTGATGTGATGCTTCTATTAGTTTCTCTGTTTAAATCATATCAAAAGATATTATAGATCCCAACAAGGGATATGTAACTAATGCTAATAGTACTTGAAGATATTTGGGGTTCCTCTTAAAAAATTAGGTGTTAGTTCGGTGAAACTTGAAAGGATCTTTGTAATTGAGCCTGTATCAAATTGAGCCTCACAACTCACAAGTCAAACTTTTCTTCTTTTCTAGCTAGACTAATAGGCCAGAGTACTTGCTTCTCTCTC

mRNA sequence

CACGTTCTCTCTGTACAAAGTTGACTTTTGAGTTTGGCTGAAGGAAGCTCTGAAAAGACAGAGGCATCCATTAAATTAGTCTTCGTTGAACCTCTTCTCTATCAAATTCATCTTCTTCCAATCAAACCACATACAGAAAGAACAAAAAAAAAAAAAAAAAAAGAAGAAGAAAATGAATCAGAATTTGAGCTCTCTCCTAATAGGGCTGGTCGGCGCAGCCATCACTTTGTCGGCTTATTCTCAGACTTTGATTTCTCCAACTGAGTGCATCACAGTCGGCCTTCTCGTTCTCATTTTTGGTCTTCTTGTTAATGAAGGTCTCATCTCTCTTTAGCTTCTTAATTCTCATTTTTCTCTTTAATCATTTGGGTAATTTCTCTGTAATTTCTTTGGAATATCACTTTATTTTTCTATTGAACTTTTGAATTTGTCTCTATTTCATTACTTTGGAATTATGAGATCCATAATCATTTTGGTCAATTTTGCAAATCTAAAATTTATAAGACGGAGATGGTCATGGTTCTAGTCAGTTGATGTGATGCTTCTATTAGTTTCTCTGTTTAAATCATATCAAAAGATATTATAGATCCCAACAAGGGATATGTAACTAATGCTAATAGTACTTGAAGATATTTGGGGTTCCTCTTAAAAAATTAGGTGTTAGTTCGGTGAAACTTGAAAGGATCTTTGTAATTGAGCCTGTATCAAATTGAGCCTCACAACTCACAAGTCAAACTTTTCTTCTTTTCTAGCTAGACTAATAGGCCAGAGTACTTGCTTCTCTCTC

Coding sequence (CDS)

ATGAATCAGAATTTGAGCTCTCTCCTAATAGGGCTGGTCGGCGCAGCCATCACTTTGTCGGCTTATTCTCAGACTTTGATTTCTCCAACTGAGTGCATCACAGTCGGCCTTCTCGTTCTCATTTTTGGTCTTCTTGTTAATGAAGGTCTCATCTCTCTTTAG

Protein sequence

MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL

Homology

[Close]

BLAST of Tan0002195 vs. NCBI nr
Match: XP_031737855.1 (uncharacterized protein LOC105435000 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 5.5e-16
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEG ISL
Sbjct: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 53

[Close]

BLAST of Tan0002195 vs. NCBI nr
Match: XP_016899638.1 (PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 5.5e-16
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEG ISL
Sbjct: 33 MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 85

[Close]

BLAST of Tan0002195 vs. NCBI nr
Match: XP_038905779.1 (uncharacterized protein LOC120091734 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MNQNLSSLLIGLVGAAITLSAYSQTLISPTECIT+GLLVLIFGLLVNEG ISL
Sbjct: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITMGLLVLIFGLLVNEGFISL 53

[Close]

BLAST of Tan0002195 vs. NCBI nr
Match: XP_022159078.1 (uncharacterized protein LOC111025520 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MN+NLSSLLIGLVGAAITLSAYSQT ISPTECITVGLLVLIFGLLVNEGLISL
Sbjct: 40 MNRNLSSLLIGLVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGLISL 92

[Close]

BLAST of Tan0002195 vs. NCBI nr
Match: XP_007032590.1 (PREDICTED: uncharacterized protein LOC18601549 [Theobroma cacao] >EOY03516.1 Uncharacterized protein TCM_018610 [Theobroma cacao])

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MNQNLSSLLIGLVGAAITLSAYSQT ISPT+C+TVGLLVL+FGLLV EGLISL
Sbjct: 1  MNQNLSSLLIGLVGAAITLSAYSQTFISPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Tan0002195 vs. ExPASy TrEMBL
Match: A0A1S4DUJ5 (uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-16
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEG ISL
Sbjct: 33 MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 85

[Close]

BLAST of Tan0002195 vs. ExPASy TrEMBL
Match: A0A6J1DXU0 (uncharacterized protein LOC111025520 OS=Momordica charantia OX=3673 GN=LOC111025520 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MN+NLSSLLIGLVGAAITLSAYSQT ISPTECITVGLLVLIFGLLVNEGLISL
Sbjct: 40 MNRNLSSLLIGLVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGLISL 92

[Close]

BLAST of Tan0002195 vs. ExPASy TrEMBL
Match: A0A061EF06 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018610 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MNQNLSSLLIGLVGAAITLSAYSQT ISPT+C+TVGLLVL+FGLLV EGLISL
Sbjct: 1  MNQNLSSLLIGLVGAAITLSAYSQTFISPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Tan0002195 vs. ExPASy TrEMBL
Match: A0A6J1F0Z9 (uncharacterized protein LOC111441164 OS=Cucurbita moschata OX=3662 GN=LOC111441164 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MNQNLSSLLIGLVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEG IS+
Sbjct: 1  MNQNLSSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 53

[Close]

BLAST of Tan0002195 vs. ExPASy TrEMBL
Match: A0A5D2PYY3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A07G240600v1 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          MNQN+SSLLIG+VGAA+TLSAYSQT ISPT+C+TVGLLVL+FGLLV EGLISL
Sbjct: 1  MNQNMSSLLIGIVGAAVTLSAYSQTFISPTQCVTVGLLVLMFGLLVREGLISL 53

[Close]

BLAST of Tan0002195 vs. TAIR 10
Match: AT3G29034.1 (unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-09
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 3  QNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGLISL 54
          +N+ SL+IGLVG A+TL AYSQT + P + I  GL VL FGLLV+EG ISL
Sbjct: 36 RNMQSLVIGLVGGALTLGAYSQTYVDPGKSIGAGLFVLFFGLLVSEGFISL 86

The following BLAST results are available for this feature:

BLAST of Tan0002195 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002195 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737855.1	5.5e-16	98.11	uncharacterized protein LOC105435000 [Cucumis sativus]	[more]
XP_016899638.1	5.5e-16	98.11	PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo]	[more]
XP_038905779.1	1.2e-15	96.23	uncharacterized protein LOC120091734 [Benincasa hispida]	[more]
XP_022159078.1	2.7e-15	96.23	uncharacterized protein LOC111025520 [Momordica charantia]	[more]
XP_007032590.1	1.8e-14	90.57	PREDICTED: uncharacterized protein LOC18601549 [Theobroma cacao] >EOY03516.1 Unc...	[more]

BLAST of Tan0002195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUJ5	2.7e-16	98.11	uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=...	[more]
A0A6J1DXU0	1.3e-15	96.23	uncharacterized protein LOC111025520 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A061EF06	8.6e-15	90.57	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018610 PE=4 SV=1	[more]
A0A6J1F0Z9	1.9e-14	86.79	uncharacterized protein LOC111441164 OS=Cucurbita moschata OX=3662 GN=LOC1114411...	[more]
A0A5D2PYY3	3.3e-14	84.91	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A07G240600v1 P...	[more]

BLAST of Tan0002195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29034.1	1.1e-09	62.75	unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacter...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002195.1	Tan0002195.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane