Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTTATGATGACTGATGCAGGCATTAGTGAAGAAAGAATGGTTGGATTTGAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAGGAAAGAGATTATGAAATCGCTTCTCTCAAGAATCAGATCGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCATGCTGTCAGAAATAAGGGAAAGACCTTTGTACATGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTGTCCAACAACTCTAGGATATGATTACAAACTCCATCAGAGCACAATATGGTGGGCCTACTCAAAACTCTCTTATGTATTCCAAGCCATATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATACCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGAGCAATCCCAAACAACACATTGCTCACTTCATTGAGACATGTGAAAATGCTGGTACTAGAGGAGATCTGCTAGTCAAACAATTCGTTCGAACCTTGAAAGGAAATGCTTTTGACTGGTATACTGACCTCGAGCCAGAGATTATTGACAGTTGGGAATAA
mRNA sequence
ATGTCCGTTATGATGACTGATGCAGGCATTAGTGAAGAAAGAATGGTTGGATTTGAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAGGAAAGAGATTATGAAATCGCTTCTCTCAAGAATCAGATCGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCATGCTGTCAGAAATAAGGGAAAGACCTTTGTACATGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTCCATATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATACCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGAGCAATCCCAAACAACACATTGCTCACTTCATTGAGACATGTGAAAATGCTGGTACTAGAGGAGATCTGCTAGTCAAACAATTCGTTCGAACCTTGAAAGGAAATGCTTTTGACTGGTATACTGACCTCGAGCCAGAGATTATTGACAGTTGGGAATAA
Coding sequence (CDS)
ATGTCCGTTATGATGACTGATGCAGGCATTAGTGAAGAAAGAATGGTTGGATTTGAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAGGAAAGAGATTATGAAATCGCTTCTCTCAAGAATCAGATCGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCATGCTGTCAGAAATAAGGGAAAGACCTTTGTACATGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTCCATATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATACCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGAGCAATCCCAAACAACACATTGCTCACTTCATTGAGACATGTGAAAATGCTGGTACTAGAGGAGATCTGCTAGTCAAACAATTCGTTCGAACCTTGAAAGGAAATGCTTTTGACTGGTATACTGACCTCGAGCCAGAGATTATTGACAGTTGGGAATAA
Protein sequence
MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRNKGKTFVHEDHTQHSTSIASLSPYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
Homology
BLAST of Tan0001925 vs. NCBI nr
Match:
KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])
HSP 1 Score: 244.6 bits (623), Expect = 5.8e-61
Identity = 127/188 (67.55%), Postives = 139/188 (73.94%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR-- 60
MSVM+TD SE+RM EKK+NML+KAVEERD+EIA LKN IESRDAAESS TH ++
Sbjct: 82 MSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAESSHTHTIKNA 141
Query: 61 NKGKTFVHEDHTQHSTSIASLS----------------------------PYTKRIDNLR 120
NKGK + E Q+STSIASLS PYTKRIDN+R
Sbjct: 142 NKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRIDNMR 201
Query: 121 MPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 159
MP+GYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261
BLAST of Tan0001925 vs. NCBI nr
Match:
KAA0057696.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27482.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 127/188 (67.55%), Postives = 139/188 (73.94%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR-- 60
MSVM+TD SE+RM EKK+NML+KAVEERD+EIASLKN IESRDAAESS TH ++
Sbjct: 1 MSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAAESSHTHIIKNV 60
Query: 61 NKGKTFVHEDHTQHSTSIASLS----------------------------PYTKRIDNLR 120
NKGK + E Q+STSIASLS PYTKRIDN+R
Sbjct: 61 NKGKEIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYCGPAQTFFLYSKPYTKRIDNMR 120
Query: 121 MPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 159
MP+ YQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 121 MPHEYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 180
BLAST of Tan0001925 vs. NCBI nr
Match:
TYK18586.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 240.7 bits (613), Expect = 8.3e-60
Identity = 127/188 (67.55%), Postives = 136/188 (72.34%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN- 60
MSVM+TD SE+RM EKK+NML+K VEERDYEIA LKN IESRDAAESS H V+N
Sbjct: 50 MSVMVTDVDESEDRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNT 109
Query: 61 -KGKTFVHEDHTQHSTSIASLS----------------------------PYTKRIDNLR 120
KGK + E Q+STSIASLS PYTKRIDNLR
Sbjct: 110 DKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLR 169
Query: 121 MPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 159
MPNGYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLE
Sbjct: 170 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 229
BLAST of Tan0001925 vs. NCBI nr
Match:
KAA0025354.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 239.2 bits (609), Expect = 2.4e-59
Identity = 120/160 (75.00%), Postives = 134/160 (83.75%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR-- 60
MSVM+TD SE+RM EKK+N+L+K VEERD+EIA LKN IESRDAAESS TH ++
Sbjct: 50 MSVMVTDVDTSEDRMAELEKKVNVLMKEVEERDFEIALLKNHIESRDAAESSHTHTIKNA 109
Query: 61 NKGKTFVHEDHTQHSTSIASLSPYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIE 120
NKGK + E Q+STSIASLS + IDN+RMP+GYQPPKFQQFDGK NPKQH+AHFIE
Sbjct: 110 NKGKAIMQESQPQNSTSIASLS-VQQLIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIE 169
Query: 121 TCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE 159
TCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE IDSWE
Sbjct: 170 TCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWE 208
BLAST of Tan0001925 vs. NCBI nr
Match:
KAA0059562.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 238.8 bits (608), Expect = 3.2e-59
Identity = 126/188 (67.02%), Postives = 135/188 (71.81%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN- 60
MSVM+T+ SE RM EKK+NML+K VEERDYEIA LKN IESRDAAESS H V+N
Sbjct: 82 MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNT 141
Query: 61 -KGKTFVHEDHTQHSTSIASLS----------------------------PYTKRIDNLR 120
KGK + E Q+STSIASLS PYTKRIDNLR
Sbjct: 142 DKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLR 201
Query: 121 MPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 159
MPNGYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLE
Sbjct: 202 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 261
BLAST of Tan0001925 vs. ExPASy TrEMBL
Match:
A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 2.8e-61
Identity = 127/188 (67.55%), Postives = 139/188 (73.94%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR-- 60
MSVM+TD SE+RM EKK+NML+KAVEERD+EIA LKN IESRDAAESS TH ++
Sbjct: 82 MSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAESSHTHTIKNA 141
Query: 61 NKGKTFVHEDHTQHSTSIASLS----------------------------PYTKRIDNLR 120
NKGK + E Q+STSIASLS PYTKRIDN+R
Sbjct: 142 NKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRIDNMR 201
Query: 121 MPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 159
MP+GYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261
BLAST of Tan0001925 vs. ExPASy TrEMBL
Match:
A0A5A7UU70 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00360 PE=4 SV=1)
HSP 1 Score: 243.0 bits (619), Expect = 8.1e-61
Identity = 127/188 (67.55%), Postives = 139/188 (73.94%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR-- 60
MSVM+TD SE+RM EKK+NML+KAVEERD+EIASLKN IESRDAAESS TH ++
Sbjct: 1 MSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAAESSHTHIIKNV 60
Query: 61 NKGKTFVHEDHTQHSTSIASLS----------------------------PYTKRIDNLR 120
NKGK + E Q+STSIASLS PYTKRIDN+R
Sbjct: 61 NKGKEIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYCGPAQTFFLYSKPYTKRIDNMR 120
Query: 121 MPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 159
MP+ YQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 121 MPHEYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 180
BLAST of Tan0001925 vs. ExPASy TrEMBL
Match:
A0A5D3D4X3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001130 PE=4 SV=1)
HSP 1 Score: 240.7 bits (613), Expect = 4.0e-60
Identity = 127/188 (67.55%), Postives = 136/188 (72.34%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN- 60
MSVM+TD SE+RM EKK+NML+K VEERDYEIA LKN IESRDAAESS H V+N
Sbjct: 50 MSVMVTDVDESEDRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNT 109
Query: 61 -KGKTFVHEDHTQHSTSIASLS----------------------------PYTKRIDNLR 120
KGK + E Q+STSIASLS PYTKRIDNLR
Sbjct: 110 DKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLR 169
Query: 121 MPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 159
MPNGYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLE
Sbjct: 170 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 229
BLAST of Tan0001925 vs. ExPASy TrEMBL
Match:
A0A5A7SI89 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00380 PE=4 SV=1)
HSP 1 Score: 239.2 bits (609), Expect = 1.2e-59
Identity = 120/160 (75.00%), Postives = 134/160 (83.75%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR-- 60
MSVM+TD SE+RM EKK+N+L+K VEERD+EIA LKN IESRDAAESS TH ++
Sbjct: 50 MSVMVTDVDTSEDRMAELEKKVNVLMKEVEERDFEIALLKNHIESRDAAESSHTHTIKNA 109
Query: 61 NKGKTFVHEDHTQHSTSIASLSPYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIE 120
NKGK + E Q+STSIASLS + IDN+RMP+GYQPPKFQQFDGK NPKQH+AHFIE
Sbjct: 110 NKGKAIMQESQPQNSTSIASLS-VQQLIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIE 169
Query: 121 TCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE 159
TCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE IDSWE
Sbjct: 170 TCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWE 208
BLAST of Tan0001925 vs. ExPASy TrEMBL
Match:
A0A5A7UUI7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00790 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 1.5e-59
Identity = 126/188 (67.02%), Postives = 135/188 (71.81%), Query Frame = 0
Query: 1 MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN- 60
MSVM+T+ SE RM EKK+NML+K VEERDYEIA LKN IESRDAAESS H V+N
Sbjct: 82 MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNT 141
Query: 61 -KGKTFVHEDHTQHSTSIASLS----------------------------PYTKRIDNLR 120
KGK + E Q+STSIASLS PYTKRIDNLR
Sbjct: 142 DKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLR 201
Query: 121 MPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 159
MPNGYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLE
Sbjct: 202 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 261
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0047477.1 | 5.8e-61 | 67.55 | uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa] | [more] |
KAA0057696.1 | 1.7e-60 | 67.55 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27482.1 ty3-gyp... | [more] |
TYK18586.1 | 8.3e-60 | 67.55 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0025354.1 | 2.4e-59 | 75.00 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0059562.1 | 3.2e-59 | 67.02 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7TZU9 | 2.8e-61 | 67.55 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... | [more] |
A0A5A7UU70 | 8.1e-61 | 67.55 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3D4X3 | 4.0e-60 | 67.55 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7SI89 | 1.2e-59 | 75.00 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7UUI7 | 1.5e-59 | 67.02 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |